SlideShare a Scribd company logo
Translation
From RNA to protein: translation
The genetic code
Three possible “reading frames”
THE ABC FOR THE DNA
THE AXB CFO RTH EDN A
THE ACF ORT HED NA
Insertion (X)
or
Deletion (B)
3
Messenger RNA (mRNA)
methionine glycine serine isoleucine glycine alanine stop
codon
protein
A U G G G C U C C A U C G G C G C A U A A
mRNA
start
codon
Primary structure of a protein
aa1 aa2 aa3 aa4 aa5 aa6
peptide bonds
codon 2 codon 3 codon 4 codon 5 codon 6 codon 7
codon 1
copyright cmassengale
tRNA molecules:
matching amino acids to codons in mRNA
Ribosomes
• Ribosomes facilitate specific coupling of
tRNA anticodons with mRNA codons in
protein synthesis
• The two ribosomal subunits (large and
small) are made of proteins and
ribosomal RNA (rRNA)
• Bacterial and eukaryotic ribosomes are
somewhat similar but have significant
differences: some antibiotic drugs
specifically target bacterial ribosomes
without harming eukaryotic ribosomes
Composition of eukaryotic ribosomes
• A ribosome has three binding sites for tRNA
– The P site holds the tRNA that carries the
growing polypeptide chain
– The A site holds the tRNA that carries the next
amino acid to be added to the chain
– The E site is the exit site, where discharged
tRNAs leave the ribosome
Exit tunnel
A site (Aminoacyl-
tRNA binding site)
Small
subunit
Large
subunit
P A
P site (Peptidyl-tRNA
binding site)
mRNA
binding site
(b) Schematic model showing binding sites
E site
(Exit site)
E
Amino end
mRNA
E
(c) Schematic model with mRNA and tRNA
5 Codons
3
tRNA
Growing polypeptide
Next amino
acid to be
added to
polypeptide
chain
Factors Translation steps Functions
IF-1 Initiation Helps to stabilize 30S ribosomal subunit
IF-2 Initiation
Binds fmet-tRNA with 30S subunit
mRNA complex; bind GTP and
hydrolyse
IF-3 Initiation Binds 30S subunit with mRNA
EF-TU Elongation
Binds GTP; bring Aminoacyl-tRNA to A-
site of ribosome
EF-TS Elongation Generates EF-TU
EF-G Elongation Helps in translocation of ribosome
RF-1 Termination
Helps to dissociates polypeptide from
tRNA ribosome complex; specific for
UAA and UAG
RF-2 Termination
Helps to dissociates polypeptide;
specific for UGA and UAA
RF-3 Termination Stimulates RF-1 and RF-2
1. Activation of aminoacids
Chemistry of tRNA Charging with Amino Acid
1. Activation of aminoacids
Aminoacyl-tRNA
synthetase (enzyme)
Amino acid
P P P Adenosine
ATP
P
P
P
P
P
i
i
i
Adenosine
tRNA
Adenosine
P
tRNA
AMP
Computer model
Amino
acid
Aminoacyl-tRNA
synthetase
Aminoacyl tRNA
(“charged tRNA”)
Figure 17.16-4
1. Activation of aminoacids
• The activation of aminoacids take place in cytosol.
• The activation of aminoacids is catalyzed by their aminoacyl tRNA
synthetases.
• All the 20 aminoacids are activated and bound to 3’ end of their
specific tRNA in the presence of ATP and Mg++.
• The N-formylated methionine is chain initiating aminoacid in bacteria
whereas methionine is chain initiating aminoacid in eukaryotes.
• Methionine is activated by methionyl-tRNA synthetase. For N-
formylmethionine two types of tRNA are used ie. tRNAmet and
tRNAfmet.
• Similarly, all 2o aminoacids are activated (amino acyl-AMP enzyme
complex) and then bound to their specific tRNA forming Aminoacyl
tRNA.
2. Initiation:
Translation Initiation Complex in Prokaryotes
Initiation factors deliver initiator fMet-tRNA to
mRNA initiation codon positioned at the “P” site
of the 30S ribosomal subunit.
Initiation codon is AUG preceded by “Shine-Delgarno
sequence that is recognized by the 16S rRNA in
the 30S ribosomal subunit.
2. Initiation:
• In the first step, initiation factor-3 (IF-3) binds to 30S ribosomal unit.
• Then mRNA binds to 30S ribosomal subunit in such a way that AUG
codon lie on the peptidyl (P) site and the second codon lies on
aminoacyl (A) site.
• The tRNA carrying formylated methionine ie. FMet–tRNAFMet is
palced at P-site. This specificity is induced by IF-2 with utilization of
GTP. The IF-1 prevent binding of FMet–tRNAFMet is in A-site.
• Shinedalgrno sequence in the mRNA guide correct positioning of
AUG codon at P-site of 30S ribosome.
• After binding of FMet–tRNAFMet on P-site, IF-3, IF-2 and IF-1 are
released so that 50S ribosomal unit bind with 30S forming 70S
sibosome. The exit site is located in 50S.
3. Elongation:
• i. Binding of AA-tRNA at A-site:
• The 2nd tRNA carrying next aminoacid comes into A-site and recognizes the codon
on mRNA. This binding is facilitated by EF-TU and utilizes GTP.
• After binding, GTP is hydrolysed and EF-TU-GDP is releasd
• EF=TU-GDP then and enter into EF-TS cycle.
• ii. Peptide bond formation:
• The aminoacid present in t-RNA of P-site ie Fmet is transferred to t-RNA of A-site
forming peptide bond. This reaction is catalyzed by peptidyltransferase.
• Now, the t-RNA at P-site become uncharged
• iii. Ribosome translocation:
• After peptide bond formation ribosome moves one codon ahead along 5’-3’
direction on mRNA, so that dipeptide-tRNA appear on P-site and next codon
appear on A-site.
• The uncharged tRNA exit from ribosome and enter to cytosol.
• The ribosomal translocation requires EF-G-GTP (translocase enzyme) which
change the 3D structure of ribosome and catalyze 5’-3’ movement.
• The codon on A-site is now recognized by other aminoacyl-tRNA as in previous.
• The dipeptide on P-site is transferred to A-site forming tripeptide.
• This process continues giving long polypeptide chain of aminoacids.
3. Elongation:
4. Termination:
4. Termination:
• The peptide bond formation and elongation of
polypeptide continues until stop codon appear on A-site.
• If stop codon appear on A-site it is not recognized by t-
RNA carrying aminoacids because stop codon donot
have anticodon on mRNA.
• The stop codon are recognized by next protein called
release factor (Rf-1, RF-2 and RF-3) which hydrolyses
and cause release of all component ie 30s, 50S, mRNA
and polypeptide separates.
• RF-1 recognisaes UAA and UAg while RF-2 recognises
UAA and UGA while RF-3 dissociate 30S and 50S
subunits.
• In case of eukaryotes only one release actor eRF causes
dissociation.
Krebs
cycle
Glycolysis
Glycolysis
Calvin cycle
Translation of the genetic code:
two adaptors that act one after another
mRNA translation mechanism
Step1: An aminoacyl-tRNA molecule binds to the A-site
on the ribosome
Step2: A new peptide bond is formed
Step3: The small subunit moves a distance of three
nucleotides along the mRNA chain ejecting the
spent tRNA molecule
Step4: The next aminoacyl-tRNA molecule binds to the A-site
on the ribosome
Step5: . . .
The initiation phase of protein synthesis in eukaryotes
1. Initiation complex (small ribosomal subunit + initiation factors)
binds DNA and searches for start codon
2. Large ribosomal subunit adds to the complex
3. Translation starts
4. . . .
The final phase of protein synthesis
 binding of release factor to a stop codon terminates translation
 the completed polypeptide is released
 the ribosome dissociates into its two separate subunits
Ribosome Association and
Initiation of Translation
• The initiation stage of translation brings
together mRNA, a tRNA with the first amino
acid, and the two ribosomal subunits
• First, a small ribosomal subunit binds with
mRNA and a special initiator tRNA
• Then the small subunit moves along the
mRNA until it reaches the start codon (AUG)
• Proteins called initiation factors bring in the
large subunit that completes the translation
initiation complex
Figure 17.18
Initiator
tRNA
mRNA
5
5
3
Start codon
Small
ribosomal
subunit
mRNA binding site
3
Translation initiation complex
5 3
3 U
U
A
A G
C
P
P site
i

GTP GDP
Large
ribosomal
subunit
E A
5
Elongation of the Polypeptide Chain
• During the elongation stage, amino acids
are added one by one to the preceding
amino acid at the C-terminus of the
growing chain
• Each addition involves proteins called
elongation factors and occurs in three
steps: codon recognition, peptide bond
formation, and translocation
• Translation proceeds along the mRNA in a
5′ to 3′ direction
Amino end of
polypeptide
mRNA
5
E
A
site
3
E
GTP
GDP  P i
P A
E
P A
GTP
GDP  P i
P A
E
Ribosome ready for
next aminoacyl tRNA
P
site
Figure 17.19-4
Termination of Translation
• Termination occurs when a stop codon in
the mRNA reaches the A site of the
ribosome
• The A site accepts a protein called a
release factor
• The release factor causes the addition of a
water molecule instead of an amino acid
• This reaction releases the polypeptide,
and the translation assembly then comes
apart
Figure 17.20-3
Release
factor
Stop codon
(UAG, UAA, or UGA)
3
5
3
5
Free
polypeptide
2 GTP
5
3
2 GDP  2 i
P
Polyribosomes
• A number of ribosomes can translate a
single mRNA simultaneously, forming a
polyribosome (or polysome)
• Polyribosomes enable a cell to make many
copies of a polypeptide very quickly
Polyribosomes:
several ribosomes can simultaneously translate
the same mRNA molecule
Proteasomes:
degradation of “unwanted” proteins in eukaryotic cells
The production of a protein by a eukaryotic cell
Many levels of
regulation/variation
Figure 17.21
Completed
polypeptide
Incoming
ribosomal
subunits
Start of
mRNA
(5 end)
End of
mRNA
(3 end)
(a)
Ribosomes
mRNA
(b)
0.1 m
Growing
polypeptides
Completing and Targeting the
Functional Protein
• Often translation is not sufficient to make a
functional protein
• Polypeptide chains are modified after
translation or targeted to specific sites in the
cell
Targeting Polypeptides to Specific
Locations
• Two populations of ribosomes are evident in
cells: free ribsomes (in the cytosol) and
bound ribosomes (attached to the ER)
• Free ribosomes mostly synthesize proteins
that function in the cytosol
• Bound ribosomes make proteins of the
endomembrane system and proteins that
are secreted from the cell
• Ribosomes are identical and can switch
from free to bound
Free and membrane-bound ribosomes
9 Translation.ppt

More Related Content

Similar to 9 Translation.ppt

Translation in prokaryotes
Translation in prokaryotesTranslation in prokaryotes
Translation in prokaryotes
Navdeep Singh
 
Transcriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdfTranscriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdf
NicaAripalAljasJusti
 
Transcriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdfTranscriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdf
NicaAripalAljasJusti
 
Protein synthesis(translation)
Protein synthesis(translation)Protein synthesis(translation)
Protein synthesis(translation)
Neha Mahor
 
Biosynthesis of protein in eukariotes
Biosynthesis of protein in eukariotesBiosynthesis of protein in eukariotes
Biosynthesis of protein in eukariotes
KAUSHAL SAHU
 
Translation in prokaryotes
Translation in prokaryotesTranslation in prokaryotes
Translation in prokaryotes
Praveen Garg
 
Protein synathesis in eukariyotes
Protein synathesis in eukariyotesProtein synathesis in eukariyotes
Protein synathesis in eukariyotes
KAUSHAL SAHU
 
Prokaryotic translation machinery by kk
Prokaryotic translation machinery by kk Prokaryotic translation machinery by kk
Prokaryotic translation machinery by kk
KAUSHAL SAHU
 
prokaryotic translation mechinry
prokaryotic translation mechinryprokaryotic translation mechinry
prokaryotic translation mechinry
KAUSHAL SAHU
 
Translation part 2
Translation part 2Translation part 2
Translation part 2
Huda Abbasi
 
Dna translation
Dna translationDna translation
Dna translation
Anjali Shah
 
Biomol-Translation Eukaryote.pptx
Biomol-Translation Eukaryote.pptxBiomol-Translation Eukaryote.pptx
Biomol-Translation Eukaryote.pptx
FitriWidyaHandayani1
 
Translation in Pro and Eu karyotes
Translation in Pro  and Eu karyotesTranslation in Pro  and Eu karyotes
Translation in Pro and Eu karyotes
Nusrat Gulbarga
 
Translation in Prokaryotes and Eukaryotes
Translation  in Prokaryotes and Eukaryotes Translation  in Prokaryotes and Eukaryotes
Translation in Prokaryotes and Eukaryotes
Ikram Ullah
 
Translation in Prokaryotes and Eukaryotes
Translation in Prokaryotes and EukaryotesTranslation in Prokaryotes and Eukaryotes
Translation in Prokaryotes and Eukaryotes
Ikram Ullah
 
Translation and microbial protein production
Translation and microbial protein productionTranslation and microbial protein production
Translation and microbial protein productionmithu mehr
 
Translation.pptx
Translation.pptxTranslation.pptx
Translation.pptx
sXVP
 
Protein synthesis
Protein synthesisProtein synthesis
Protein synthesis
Jigar Patel
 
Translation (protein formation)
Translation (protein formation)Translation (protein formation)
Translation (protein formation)
ghulam yaseen
 

Similar to 9 Translation.ppt (20)

Translation in prokaryotes
Translation in prokaryotesTranslation in prokaryotes
Translation in prokaryotes
 
Transcriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdfTranscriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdf
 
Transcriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdfTranscriptional, Translational, and Post-translational Regulation.pdf
Transcriptional, Translational, and Post-translational Regulation.pdf
 
Protein synthesis(translation)
Protein synthesis(translation)Protein synthesis(translation)
Protein synthesis(translation)
 
Biosynthesis of protein in eukariotes
Biosynthesis of protein in eukariotesBiosynthesis of protein in eukariotes
Biosynthesis of protein in eukariotes
 
Translation in prokaryotes
Translation in prokaryotesTranslation in prokaryotes
Translation in prokaryotes
 
Protein synathesis in eukariyotes
Protein synathesis in eukariyotesProtein synathesis in eukariyotes
Protein synathesis in eukariyotes
 
Prokaryotic translation machinery by kk
Prokaryotic translation machinery by kk Prokaryotic translation machinery by kk
Prokaryotic translation machinery by kk
 
prokaryotic translation mechinry
prokaryotic translation mechinryprokaryotic translation mechinry
prokaryotic translation mechinry
 
Translation part 2
Translation part 2Translation part 2
Translation part 2
 
Dna translation
Dna translationDna translation
Dna translation
 
Biomol-Translation Eukaryote.pptx
Biomol-Translation Eukaryote.pptxBiomol-Translation Eukaryote.pptx
Biomol-Translation Eukaryote.pptx
 
Translation in Pro and Eu karyotes
Translation in Pro  and Eu karyotesTranslation in Pro  and Eu karyotes
Translation in Pro and Eu karyotes
 
Microbial genetics translation
Microbial genetics translationMicrobial genetics translation
Microbial genetics translation
 
Translation in Prokaryotes and Eukaryotes
Translation  in Prokaryotes and Eukaryotes Translation  in Prokaryotes and Eukaryotes
Translation in Prokaryotes and Eukaryotes
 
Translation in Prokaryotes and Eukaryotes
Translation in Prokaryotes and EukaryotesTranslation in Prokaryotes and Eukaryotes
Translation in Prokaryotes and Eukaryotes
 
Translation and microbial protein production
Translation and microbial protein productionTranslation and microbial protein production
Translation and microbial protein production
 
Translation.pptx
Translation.pptxTranslation.pptx
Translation.pptx
 
Protein synthesis
Protein synthesisProtein synthesis
Protein synthesis
 
Translation (protein formation)
Translation (protein formation)Translation (protein formation)
Translation (protein formation)
 

Recently uploaded

Hemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptxHemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptx
muralinath2
 
Mammalian Pineal Body Structure and Also Functions
Mammalian Pineal Body Structure and Also FunctionsMammalian Pineal Body Structure and Also Functions
Mammalian Pineal Body Structure and Also Functions
YOGESH DOGRA
 
plant biotechnology Lecture note ppt.pptx
plant biotechnology Lecture note ppt.pptxplant biotechnology Lecture note ppt.pptx
plant biotechnology Lecture note ppt.pptx
yusufzako14
 
Orion Air Quality Monitoring Systems - CWS
Orion Air Quality Monitoring Systems - CWSOrion Air Quality Monitoring Systems - CWS
Orion Air Quality Monitoring Systems - CWS
Columbia Weather Systems
 
In silico drugs analogue design: novobiocin analogues.pptx
In silico drugs analogue design: novobiocin analogues.pptxIn silico drugs analogue design: novobiocin analogues.pptx
In silico drugs analogue design: novobiocin analogues.pptx
AlaminAfendy1
 
EY - Supply Chain Services 2018_template.pptx
EY - Supply Chain Services 2018_template.pptxEY - Supply Chain Services 2018_template.pptx
EY - Supply Chain Services 2018_template.pptx
AlguinaldoKong
 
Seminar of U.V. Spectroscopy by SAMIR PANDA
 Seminar of U.V. Spectroscopy by SAMIR PANDA Seminar of U.V. Spectroscopy by SAMIR PANDA
Seminar of U.V. Spectroscopy by SAMIR PANDA
SAMIR PANDA
 
Structural Classification Of Protein (SCOP)
Structural Classification Of Protein  (SCOP)Structural Classification Of Protein  (SCOP)
Structural Classification Of Protein (SCOP)
aishnasrivastava
 
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
Scintica Instrumentation
 
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Sérgio Sacani
 
GBSN- Microbiology (Lab 3) Gram Staining
GBSN- Microbiology (Lab 3) Gram StainingGBSN- Microbiology (Lab 3) Gram Staining
GBSN- Microbiology (Lab 3) Gram Staining
Areesha Ahmad
 
Cancer cell metabolism: special Reference to Lactate Pathway
Cancer cell metabolism: special Reference to Lactate PathwayCancer cell metabolism: special Reference to Lactate Pathway
Cancer cell metabolism: special Reference to Lactate Pathway
AADYARAJPANDEY1
 
NuGOweek 2024 Ghent - programme - final version
NuGOweek 2024 Ghent - programme - final versionNuGOweek 2024 Ghent - programme - final version
NuGOweek 2024 Ghent - programme - final version
pablovgd
 
Richard's entangled aventures in wonderland
Richard's entangled aventures in wonderlandRichard's entangled aventures in wonderland
Richard's entangled aventures in wonderland
Richard Gill
 
GBSN - Biochemistry (Unit 5) Chemistry of Lipids
GBSN - Biochemistry (Unit 5) Chemistry of LipidsGBSN - Biochemistry (Unit 5) Chemistry of Lipids
GBSN - Biochemistry (Unit 5) Chemistry of Lipids
Areesha Ahmad
 
Unveiling the Energy Potential of Marshmallow Deposits.pdf
Unveiling the Energy Potential of Marshmallow Deposits.pdfUnveiling the Energy Potential of Marshmallow Deposits.pdf
Unveiling the Energy Potential of Marshmallow Deposits.pdf
Erdal Coalmaker
 
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptxBody fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
muralinath2
 
platelets_clotting_biogenesis.clot retractionpptx
platelets_clotting_biogenesis.clot retractionpptxplatelets_clotting_biogenesis.clot retractionpptx
platelets_clotting_biogenesis.clot retractionpptx
muralinath2
 
justice-and-fairness-ethics with example
justice-and-fairness-ethics with examplejustice-and-fairness-ethics with example
justice-and-fairness-ethics with example
azzyixes
 
RNA INTERFERENCE: UNRAVELING GENETIC SILENCING
RNA INTERFERENCE: UNRAVELING GENETIC SILENCINGRNA INTERFERENCE: UNRAVELING GENETIC SILENCING
RNA INTERFERENCE: UNRAVELING GENETIC SILENCING
AADYARAJPANDEY1
 

Recently uploaded (20)

Hemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptxHemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptx
 
Mammalian Pineal Body Structure and Also Functions
Mammalian Pineal Body Structure and Also FunctionsMammalian Pineal Body Structure and Also Functions
Mammalian Pineal Body Structure and Also Functions
 
plant biotechnology Lecture note ppt.pptx
plant biotechnology Lecture note ppt.pptxplant biotechnology Lecture note ppt.pptx
plant biotechnology Lecture note ppt.pptx
 
Orion Air Quality Monitoring Systems - CWS
Orion Air Quality Monitoring Systems - CWSOrion Air Quality Monitoring Systems - CWS
Orion Air Quality Monitoring Systems - CWS
 
In silico drugs analogue design: novobiocin analogues.pptx
In silico drugs analogue design: novobiocin analogues.pptxIn silico drugs analogue design: novobiocin analogues.pptx
In silico drugs analogue design: novobiocin analogues.pptx
 
EY - Supply Chain Services 2018_template.pptx
EY - Supply Chain Services 2018_template.pptxEY - Supply Chain Services 2018_template.pptx
EY - Supply Chain Services 2018_template.pptx
 
Seminar of U.V. Spectroscopy by SAMIR PANDA
 Seminar of U.V. Spectroscopy by SAMIR PANDA Seminar of U.V. Spectroscopy by SAMIR PANDA
Seminar of U.V. Spectroscopy by SAMIR PANDA
 
Structural Classification Of Protein (SCOP)
Structural Classification Of Protein  (SCOP)Structural Classification Of Protein  (SCOP)
Structural Classification Of Protein (SCOP)
 
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...
 
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
 
GBSN- Microbiology (Lab 3) Gram Staining
GBSN- Microbiology (Lab 3) Gram StainingGBSN- Microbiology (Lab 3) Gram Staining
GBSN- Microbiology (Lab 3) Gram Staining
 
Cancer cell metabolism: special Reference to Lactate Pathway
Cancer cell metabolism: special Reference to Lactate PathwayCancer cell metabolism: special Reference to Lactate Pathway
Cancer cell metabolism: special Reference to Lactate Pathway
 
NuGOweek 2024 Ghent - programme - final version
NuGOweek 2024 Ghent - programme - final versionNuGOweek 2024 Ghent - programme - final version
NuGOweek 2024 Ghent - programme - final version
 
Richard's entangled aventures in wonderland
Richard's entangled aventures in wonderlandRichard's entangled aventures in wonderland
Richard's entangled aventures in wonderland
 
GBSN - Biochemistry (Unit 5) Chemistry of Lipids
GBSN - Biochemistry (Unit 5) Chemistry of LipidsGBSN - Biochemistry (Unit 5) Chemistry of Lipids
GBSN - Biochemistry (Unit 5) Chemistry of Lipids
 
Unveiling the Energy Potential of Marshmallow Deposits.pdf
Unveiling the Energy Potential of Marshmallow Deposits.pdfUnveiling the Energy Potential of Marshmallow Deposits.pdf
Unveiling the Energy Potential of Marshmallow Deposits.pdf
 
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptxBody fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
Body fluids_tonicity_dehydration_hypovolemia_hypervolemia.pptx
 
platelets_clotting_biogenesis.clot retractionpptx
platelets_clotting_biogenesis.clot retractionpptxplatelets_clotting_biogenesis.clot retractionpptx
platelets_clotting_biogenesis.clot retractionpptx
 
justice-and-fairness-ethics with example
justice-and-fairness-ethics with examplejustice-and-fairness-ethics with example
justice-and-fairness-ethics with example
 
RNA INTERFERENCE: UNRAVELING GENETIC SILENCING
RNA INTERFERENCE: UNRAVELING GENETIC SILENCINGRNA INTERFERENCE: UNRAVELING GENETIC SILENCING
RNA INTERFERENCE: UNRAVELING GENETIC SILENCING
 

9 Translation.ppt

  • 2. From RNA to protein: translation The genetic code Three possible “reading frames” THE ABC FOR THE DNA THE AXB CFO RTH EDN A THE ACF ORT HED NA Insertion (X) or Deletion (B)
  • 3. 3 Messenger RNA (mRNA) methionine glycine serine isoleucine glycine alanine stop codon protein A U G G G C U C C A U C G G C G C A U A A mRNA start codon Primary structure of a protein aa1 aa2 aa3 aa4 aa5 aa6 peptide bonds codon 2 codon 3 codon 4 codon 5 codon 6 codon 7 codon 1 copyright cmassengale
  • 4. tRNA molecules: matching amino acids to codons in mRNA
  • 5. Ribosomes • Ribosomes facilitate specific coupling of tRNA anticodons with mRNA codons in protein synthesis • The two ribosomal subunits (large and small) are made of proteins and ribosomal RNA (rRNA) • Bacterial and eukaryotic ribosomes are somewhat similar but have significant differences: some antibiotic drugs specifically target bacterial ribosomes without harming eukaryotic ribosomes
  • 6.
  • 8. • A ribosome has three binding sites for tRNA – The P site holds the tRNA that carries the growing polypeptide chain – The A site holds the tRNA that carries the next amino acid to be added to the chain – The E site is the exit site, where discharged tRNAs leave the ribosome
  • 9. Exit tunnel A site (Aminoacyl- tRNA binding site) Small subunit Large subunit P A P site (Peptidyl-tRNA binding site) mRNA binding site (b) Schematic model showing binding sites E site (Exit site) E
  • 10. Amino end mRNA E (c) Schematic model with mRNA and tRNA 5 Codons 3 tRNA Growing polypeptide Next amino acid to be added to polypeptide chain
  • 11. Factors Translation steps Functions IF-1 Initiation Helps to stabilize 30S ribosomal subunit IF-2 Initiation Binds fmet-tRNA with 30S subunit mRNA complex; bind GTP and hydrolyse IF-3 Initiation Binds 30S subunit with mRNA EF-TU Elongation Binds GTP; bring Aminoacyl-tRNA to A- site of ribosome EF-TS Elongation Generates EF-TU EF-G Elongation Helps in translocation of ribosome RF-1 Termination Helps to dissociates polypeptide from tRNA ribosome complex; specific for UAA and UAG RF-2 Termination Helps to dissociates polypeptide; specific for UGA and UAA RF-3 Termination Stimulates RF-1 and RF-2
  • 12. 1. Activation of aminoacids
  • 13. Chemistry of tRNA Charging with Amino Acid 1. Activation of aminoacids
  • 14. Aminoacyl-tRNA synthetase (enzyme) Amino acid P P P Adenosine ATP P P P P P i i i Adenosine tRNA Adenosine P tRNA AMP Computer model Amino acid Aminoacyl-tRNA synthetase Aminoacyl tRNA (“charged tRNA”) Figure 17.16-4
  • 15. 1. Activation of aminoacids • The activation of aminoacids take place in cytosol. • The activation of aminoacids is catalyzed by their aminoacyl tRNA synthetases. • All the 20 aminoacids are activated and bound to 3’ end of their specific tRNA in the presence of ATP and Mg++. • The N-formylated methionine is chain initiating aminoacid in bacteria whereas methionine is chain initiating aminoacid in eukaryotes. • Methionine is activated by methionyl-tRNA synthetase. For N- formylmethionine two types of tRNA are used ie. tRNAmet and tRNAfmet. • Similarly, all 2o aminoacids are activated (amino acyl-AMP enzyme complex) and then bound to their specific tRNA forming Aminoacyl tRNA.
  • 17. Translation Initiation Complex in Prokaryotes Initiation factors deliver initiator fMet-tRNA to mRNA initiation codon positioned at the “P” site of the 30S ribosomal subunit. Initiation codon is AUG preceded by “Shine-Delgarno sequence that is recognized by the 16S rRNA in the 30S ribosomal subunit.
  • 18.
  • 19.
  • 20. 2. Initiation: • In the first step, initiation factor-3 (IF-3) binds to 30S ribosomal unit. • Then mRNA binds to 30S ribosomal subunit in such a way that AUG codon lie on the peptidyl (P) site and the second codon lies on aminoacyl (A) site. • The tRNA carrying formylated methionine ie. FMet–tRNAFMet is palced at P-site. This specificity is induced by IF-2 with utilization of GTP. The IF-1 prevent binding of FMet–tRNAFMet is in A-site. • Shinedalgrno sequence in the mRNA guide correct positioning of AUG codon at P-site of 30S ribosome. • After binding of FMet–tRNAFMet on P-site, IF-3, IF-2 and IF-1 are released so that 50S ribosomal unit bind with 30S forming 70S sibosome. The exit site is located in 50S.
  • 22. • i. Binding of AA-tRNA at A-site: • The 2nd tRNA carrying next aminoacid comes into A-site and recognizes the codon on mRNA. This binding is facilitated by EF-TU and utilizes GTP. • After binding, GTP is hydrolysed and EF-TU-GDP is releasd • EF=TU-GDP then and enter into EF-TS cycle. • ii. Peptide bond formation: • The aminoacid present in t-RNA of P-site ie Fmet is transferred to t-RNA of A-site forming peptide bond. This reaction is catalyzed by peptidyltransferase. • Now, the t-RNA at P-site become uncharged • iii. Ribosome translocation: • After peptide bond formation ribosome moves one codon ahead along 5’-3’ direction on mRNA, so that dipeptide-tRNA appear on P-site and next codon appear on A-site. • The uncharged tRNA exit from ribosome and enter to cytosol. • The ribosomal translocation requires EF-G-GTP (translocase enzyme) which change the 3D structure of ribosome and catalyze 5’-3’ movement. • The codon on A-site is now recognized by other aminoacyl-tRNA as in previous. • The dipeptide on P-site is transferred to A-site forming tripeptide. • This process continues giving long polypeptide chain of aminoacids. 3. Elongation:
  • 24. 4. Termination: • The peptide bond formation and elongation of polypeptide continues until stop codon appear on A-site. • If stop codon appear on A-site it is not recognized by t- RNA carrying aminoacids because stop codon donot have anticodon on mRNA. • The stop codon are recognized by next protein called release factor (Rf-1, RF-2 and RF-3) which hydrolyses and cause release of all component ie 30s, 50S, mRNA and polypeptide separates. • RF-1 recognisaes UAA and UAg while RF-2 recognises UAA and UGA while RF-3 dissociate 30S and 50S subunits. • In case of eukaryotes only one release actor eRF causes dissociation.
  • 26. Translation of the genetic code: two adaptors that act one after another
  • 27. mRNA translation mechanism Step1: An aminoacyl-tRNA molecule binds to the A-site on the ribosome Step2: A new peptide bond is formed Step3: The small subunit moves a distance of three nucleotides along the mRNA chain ejecting the spent tRNA molecule Step4: The next aminoacyl-tRNA molecule binds to the A-site on the ribosome Step5: . . .
  • 28. The initiation phase of protein synthesis in eukaryotes 1. Initiation complex (small ribosomal subunit + initiation factors) binds DNA and searches for start codon 2. Large ribosomal subunit adds to the complex 3. Translation starts 4. . . .
  • 29. The final phase of protein synthesis  binding of release factor to a stop codon terminates translation  the completed polypeptide is released  the ribosome dissociates into its two separate subunits
  • 30. Ribosome Association and Initiation of Translation • The initiation stage of translation brings together mRNA, a tRNA with the first amino acid, and the two ribosomal subunits • First, a small ribosomal subunit binds with mRNA and a special initiator tRNA • Then the small subunit moves along the mRNA until it reaches the start codon (AUG) • Proteins called initiation factors bring in the large subunit that completes the translation initiation complex
  • 31. Figure 17.18 Initiator tRNA mRNA 5 5 3 Start codon Small ribosomal subunit mRNA binding site 3 Translation initiation complex 5 3 3 U U A A G C P P site i  GTP GDP Large ribosomal subunit E A 5
  • 32. Elongation of the Polypeptide Chain • During the elongation stage, amino acids are added one by one to the preceding amino acid at the C-terminus of the growing chain • Each addition involves proteins called elongation factors and occurs in three steps: codon recognition, peptide bond formation, and translocation • Translation proceeds along the mRNA in a 5′ to 3′ direction
  • 33. Amino end of polypeptide mRNA 5 E A site 3 E GTP GDP  P i P A E P A GTP GDP  P i P A E Ribosome ready for next aminoacyl tRNA P site Figure 17.19-4
  • 34.
  • 35.
  • 36.
  • 37.
  • 38.
  • 39.
  • 40.
  • 41.
  • 42. Termination of Translation • Termination occurs when a stop codon in the mRNA reaches the A site of the ribosome • The A site accepts a protein called a release factor • The release factor causes the addition of a water molecule instead of an amino acid • This reaction releases the polypeptide, and the translation assembly then comes apart
  • 43. Figure 17.20-3 Release factor Stop codon (UAG, UAA, or UGA) 3 5 3 5 Free polypeptide 2 GTP 5 3 2 GDP  2 i P
  • 44.
  • 45.
  • 46.
  • 47.
  • 48. Polyribosomes • A number of ribosomes can translate a single mRNA simultaneously, forming a polyribosome (or polysome) • Polyribosomes enable a cell to make many copies of a polypeptide very quickly
  • 49. Polyribosomes: several ribosomes can simultaneously translate the same mRNA molecule
  • 50. Proteasomes: degradation of “unwanted” proteins in eukaryotic cells
  • 51. The production of a protein by a eukaryotic cell Many levels of regulation/variation
  • 52. Figure 17.21 Completed polypeptide Incoming ribosomal subunits Start of mRNA (5 end) End of mRNA (3 end) (a) Ribosomes mRNA (b) 0.1 m Growing polypeptides
  • 53. Completing and Targeting the Functional Protein • Often translation is not sufficient to make a functional protein • Polypeptide chains are modified after translation or targeted to specific sites in the cell
  • 54. Targeting Polypeptides to Specific Locations • Two populations of ribosomes are evident in cells: free ribsomes (in the cytosol) and bound ribosomes (attached to the ER) • Free ribosomes mostly synthesize proteins that function in the cytosol • Bound ribosomes make proteins of the endomembrane system and proteins that are secreted from the cell • Ribosomes are identical and can switch from free to bound

Editor's Notes

  1. 3
  2. 5
  3. 8
  4. 9
  5. 10
  6. 14
  7. 30
  8. 31
  9. 32
  10. 33
  11. 42
  12. 43
  13. 48
  14. 52
  15. 53
  16. 54