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Phytochemistry
Dr. Michael Tims
How do we Come with a
Classification Scheme?
 Chemical structure
 Biosynthetic pathway
Classification scheme
 Carbohydrates
 Lipids
 Alkaloids
 Terpenoids
 Steroids
 Phenols
Glycosides (sugar ethers)
 Break down to yield sugar(s) (glycone), plus a non-
sugar component (aglycone).
 Can be difficult to isolate together
Carbohydrates
 Mucilage – demulcent activity
 Gums
 Polysaccharides
Mucilage
• Althea officinalis or
marshmallow
Demulcent - reduce
irritation of
bowels/urinary passage.
Gums
 Wound or injury products of woody plants
 Their acidic groups interact with small amounts of
calcium, magnesium and potassium to create
viscous solutions or gels in water
Industrial Uses
 Alter texture of food products
 Stabilize emulsions, retain moisture, thicken liquids
and suspend particles - toothpaste
 In frozen products prevent ice crystals
 Coat "instant mixes" so won’t react water in air
 Hold some tablets together or create time release
 Make the paper more water resistant
Gums
• Diabetes
• Cholesterol
Cyamopsis tetragonolobus
Guar gum
Polysaccharides
 -glucan - high molecular weight polymers consisting of
chains of sugars (mono- or oligo-saccharides)
 The simplest polysaccharides are cellulose and starch which
are polymers of glucose only
 Immune function - structurally dependent activity
 Gandelan active as anti-cancer agent
Ganoderma lucidum
reishi mushroom
O
O
O
O
O
CH2
CH2OH
OH
OH
OH
OH
O
CH2
OH
OH
O
CH2
OH
OH
Section of
Beta-1,6'D-Glucan
-glucans
 Amount of -glucan
chains greater in fruiting
body vs mycelium
 Structure also different
 Wild vs. Grain culture
 -glucan vs. α-glucan
Lipids
 Plant oils
 Flax seed oil
• Source omega-3 fatty acid - alpha-linolenic acid
• Alkylamides
Alkylamides (aka alkamides)
 Essential fatty acids linked to an amine
group
 Structurally related to animal
endocannabinoids
Distribution of Amides
 Echinacea angustifolia
 E. purpurea
 Prickly ash bark
 Spilanthes
 Black peppers
 Red peppers (chilis)
commons.wikimedia.org/wiki/
We will return to Echinacea
Alkaloids
Group Structure Examples
Pyrrolidine Nicotine, tetrapyrroles
Tropane Cocaine, atropine
Piperidine Coniine
Pyrrolizidine Retrosine
Quinolizidine Lupinine
Isoquinoline Berberine, morphine
Indole
Strychnine, vinblastine,
psilocybin
Purine Alkaloids (methylxanthines)
CNS Activity
 Why?
Terpenoids
Essential oils
 Aromatic herbs and spices
 Distillation, occasionally solvent extraction
 May contain hundreds of components
 Largely monoterpenes
http://commons.wikimedia.org/wiki/Category:Distillation
Monoterpene Synthesis
in Thymus vulgaris
Chemotypes
Thymus vulgaris ct. linalool
Thymus vulgaris ct. thymol
Thymus vulgaris ct. carvacrol
Thymus vulgaris ct. gerinol
Thyme vulgaris ct. thuyanol
Sesquiterpenes (C15)
 Absinthin, a dimeric
sesquiterpene lactone
 Considered a volatile oil
 Anti-malarial drug
Artemisia annua, Sweet Annie
Diterpenes (C20)
 Gingkolides from
Gingko biloba
 Cannibinoids (C21)
Diterpene Volatiles Oils
 Podophyllum peltatum
Mayapple
 Genital warts caused by
human papillomavirus
 Antimitotic
Podophyllotoxin
Triterpenes (C30)
Actaea racemosa (Cimicifuga racemosa)
Black cohosh
25-acetylcimigenol xylopyranoside (ACCX)
triterpene glycoside
Tetraterpenes (carotenoids)
Phytoene
Lycopene
-carotene
Steroid Glycoside
 Source of prednenolone and progesterone
 Co-occurs with isomer yamogenin
 Hard to cultivate wild yams
Diosgenin
www.chemblink.com
Mexican wild yam
Dioscorea mexicana
Phenolic compounds
Benzene ring
Cyclohexane structure – three double bonds.
The basis of all ‘aromatic’ chemicals
Hydroxyl group (OH)
One or more attached to benzene ring
Functional groups (= aryl groups)
Methyl CH3
Methyoxy CH3O
Amino NH2
Carboxyl COOH
Lactone ring Coumarins
CO2H
OH
Salicylic acid
Phenols
 Phenols are often glycosides
 Simple Subclassification
• Flavanoids
• Tannins
Flavonoids
 Chemotaxonomically greatest diversity
 Many are pigments, located in fruit or flower
 Stress modifiers, antioxidants and vaso-protectants
Anthraquinones
 Phenols
 Flavanoids
 Anthroquinones red/purple
pigments
Cascara sagrada
Stillbenes
 Phenols
 Flavanoids
 Tannins
 Stilbenes
Vitis vinefera
Pyrones
 Phenols
 Flavanoids
 Kava pyrones
methysticin
Piper methysticum
Phenylpropanoids
Curcuminoids
Tumeric
Lignans
OH
OCH 3
OCH 3
OCH 3
OCH 3
H3CO
OCH 3
Schizandrin Schisandria chinensis - up to 30 lignans in seeds
• Hepatoprotective
• Inhibits lipid peroxidation
Echinacea Constituents
https://pubchem.ncbi.nlm.nih.gov
dodeca-2E,4E-dienoic acid
isobutylamide
cichoric acid echinocoside
Arabinogalactan
LaLone et. al. (2009) J. Agric Food Chem. 57(19): 8820-8830
Phenylpropanoid
Derivatives
Alkamides
Let’s Go a Little Deeper
Sandasi, M. et al. (2014) Hyperspectral imaging and chemometric modeling of Echinacea – A
novel approach in the quality control of herbal medicines. Molecules 19: 13104-13121.
Echinacea angustifolia
Echinacea pallida
Echinacea purpurea
Uncertainty with Production of
Echinacea Products
 Ethanol extracts produce higher levels of alkylamides and
phenolics
 Block inflammatory response, suppressing symptoms of with
infection
 More concentrated in roots
 Signatures?
 Echinacoside (phenolic) in E. angustifolia not E. purpurea.
 Echinacin (alkylamide) in E. angustifolia and E. pallida.
Uncertainty with Echinacea
 Water extracts contain polysaccharides and glycoproteins
(arabinorhamnogalactan)
 Enhance immunity by increasing production of cytokines
 Appear to be present in aerial parts
Phenylpropanoid Derivatives
 Cichoric acid - hydroxycinnamic acid
 Cynarin – hydroxycinnamic acid
 Chlorogenic acid - hydroxycinnamic acid, and an
intermediate in lignin biosynthesis
 Echinacoside - caffeic acid glycoside
 Verbascoside - caffeoyl phenylethanoid glycoside
Alkamides (Alkylamides)
 Most abundant in roots of E. purpurea and E.
angustifolia
 Much lower amounts in aerial parts E. purpurea
and E. angustifolia
 As a whole, much lower amounts in E. pallida
Mudge, E. et al. (2011) Analysis of alkylamides in Echinacea plant materials and
dietary supplements by UFLC with diode array and MS detection. J. Agri. Food
Chem. 59: 8086-8094.
E. purpurea
Perry, NB et al. (1997) Alkamide levels in Echinacea purpurea: a rapid analytical method
revealing differences among roots, rhizomes, stems, leaves and flowers. Planta Med. 63: 58-62
Root Tissue
1. cynarin
2. echinacoside
3. cichoric acid
4. echinacoside derivative
5. verbascoside
6. alkamide
7. alkamide
8. alkamide
9. alkamide
Sloley, DB et al. (2001) Comparison of chemical components and antioxidant capacity of
different Echinacea species. J Pharm. Pharmacol. 53:849-857
Mean alkamide levels (mg/g dry weight) in different parts of E.
purpurea followed by standard deviation. Bold significantly
different (P<0.01)
E. Purpurea and Quality Control
 Alkamide distribution flower heads important to
quality control
 13 polyacetylene artifacts formed during
storage, since they are found in dried but not
fresh roots of E. pallida.
 Second cut harvest contain cichoric acid no
alkamides
 Arabinogalactans - microbiological degradation
Cichoric Acid
 Degraded during processing and juice extraction
 This occurs with many plants – black tea
 Ascorbic acid (5mM) or EtOH (≥ 45%) inhibits
degradation
 short term during extraction
 longer term storage
Nusslein, B. et al. (2000). J. Nat. Prod. 63: 1615-1618.
E. purpurea Cultivar Screening
Trout Lake Farm
 Mechanical harvesting
 Flower heads, size and uniformity of flowering time
 Large smooth leaves (leaf hairs capture dirt)
 Deep purple color
 Intense tongue tingle
(Letchamo et al. 1999)
 Field of 2 million identified 420 optimal plants
 Used organoleptic and HPLC analysis to select 360
propagation lines
 20-30 of each line replanted in three different
locations
 Used phytochemical analysis on the aerial parts to
analyze at 4 stages of flower development
Cichoric acid
Isobutylamides
E. angustifolia
↑
aerial
roots
↑
Pairssameproduct
↑

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Phtyochemistry

  • 2. How do we Come with a Classification Scheme?  Chemical structure  Biosynthetic pathway
  • 3. Classification scheme  Carbohydrates  Lipids  Alkaloids  Terpenoids  Steroids  Phenols
  • 4.
  • 5.
  • 6. Glycosides (sugar ethers)  Break down to yield sugar(s) (glycone), plus a non- sugar component (aglycone).  Can be difficult to isolate together
  • 7. Carbohydrates  Mucilage – demulcent activity  Gums  Polysaccharides
  • 8. Mucilage • Althea officinalis or marshmallow Demulcent - reduce irritation of bowels/urinary passage.
  • 9. Gums  Wound or injury products of woody plants  Their acidic groups interact with small amounts of calcium, magnesium and potassium to create viscous solutions or gels in water
  • 10. Industrial Uses  Alter texture of food products  Stabilize emulsions, retain moisture, thicken liquids and suspend particles - toothpaste  In frozen products prevent ice crystals  Coat "instant mixes" so won’t react water in air  Hold some tablets together or create time release  Make the paper more water resistant
  • 12. Polysaccharides  -glucan - high molecular weight polymers consisting of chains of sugars (mono- or oligo-saccharides)  The simplest polysaccharides are cellulose and starch which are polymers of glucose only  Immune function - structurally dependent activity  Gandelan active as anti-cancer agent Ganoderma lucidum reishi mushroom O O O O O CH2 CH2OH OH OH OH OH O CH2 OH OH O CH2 OH OH Section of Beta-1,6'D-Glucan
  • 13. -glucans  Amount of -glucan chains greater in fruiting body vs mycelium  Structure also different
  • 14.  Wild vs. Grain culture  -glucan vs. α-glucan
  • 15. Lipids  Plant oils  Flax seed oil • Source omega-3 fatty acid - alpha-linolenic acid • Alkylamides
  • 16. Alkylamides (aka alkamides)  Essential fatty acids linked to an amine group  Structurally related to animal endocannabinoids
  • 17. Distribution of Amides  Echinacea angustifolia  E. purpurea  Prickly ash bark  Spilanthes  Black peppers  Red peppers (chilis) commons.wikimedia.org/wiki/ We will return to Echinacea
  • 18. Alkaloids Group Structure Examples Pyrrolidine Nicotine, tetrapyrroles Tropane Cocaine, atropine Piperidine Coniine Pyrrolizidine Retrosine Quinolizidine Lupinine Isoquinoline Berberine, morphine Indole Strychnine, vinblastine, psilocybin
  • 21.
  • 23. Essential oils  Aromatic herbs and spices  Distillation, occasionally solvent extraction  May contain hundreds of components  Largely monoterpenes http://commons.wikimedia.org/wiki/Category:Distillation
  • 24. Monoterpene Synthesis in Thymus vulgaris Chemotypes Thymus vulgaris ct. linalool Thymus vulgaris ct. thymol Thymus vulgaris ct. carvacrol Thymus vulgaris ct. gerinol Thyme vulgaris ct. thuyanol
  • 25. Sesquiterpenes (C15)  Absinthin, a dimeric sesquiterpene lactone  Considered a volatile oil  Anti-malarial drug Artemisia annua, Sweet Annie
  • 26. Diterpenes (C20)  Gingkolides from Gingko biloba  Cannibinoids (C21)
  • 27. Diterpene Volatiles Oils  Podophyllum peltatum Mayapple  Genital warts caused by human papillomavirus  Antimitotic Podophyllotoxin
  • 28. Triterpenes (C30) Actaea racemosa (Cimicifuga racemosa) Black cohosh 25-acetylcimigenol xylopyranoside (ACCX) triterpene glycoside
  • 30. Steroid Glycoside  Source of prednenolone and progesterone  Co-occurs with isomer yamogenin  Hard to cultivate wild yams Diosgenin www.chemblink.com Mexican wild yam Dioscorea mexicana
  • 31. Phenolic compounds Benzene ring Cyclohexane structure – three double bonds. The basis of all ‘aromatic’ chemicals Hydroxyl group (OH) One or more attached to benzene ring Functional groups (= aryl groups) Methyl CH3 Methyoxy CH3O Amino NH2 Carboxyl COOH Lactone ring Coumarins CO2H OH Salicylic acid
  • 32.
  • 33. Phenols  Phenols are often glycosides  Simple Subclassification • Flavanoids • Tannins
  • 34. Flavonoids  Chemotaxonomically greatest diversity  Many are pigments, located in fruit or flower  Stress modifiers, antioxidants and vaso-protectants
  • 35. Anthraquinones  Phenols  Flavanoids  Anthroquinones red/purple pigments Cascara sagrada
  • 36. Stillbenes  Phenols  Flavanoids  Tannins  Stilbenes Vitis vinefera
  • 37.
  • 38. Pyrones  Phenols  Flavanoids  Kava pyrones methysticin Piper methysticum
  • 40. Lignans OH OCH 3 OCH 3 OCH 3 OCH 3 H3CO OCH 3 Schizandrin Schisandria chinensis - up to 30 lignans in seeds • Hepatoprotective • Inhibits lipid peroxidation
  • 41. Echinacea Constituents https://pubchem.ncbi.nlm.nih.gov dodeca-2E,4E-dienoic acid isobutylamide cichoric acid echinocoside Arabinogalactan LaLone et. al. (2009) J. Agric Food Chem. 57(19): 8820-8830 Phenylpropanoid Derivatives Alkamides
  • 42. Let’s Go a Little Deeper
  • 43. Sandasi, M. et al. (2014) Hyperspectral imaging and chemometric modeling of Echinacea – A novel approach in the quality control of herbal medicines. Molecules 19: 13104-13121. Echinacea angustifolia Echinacea pallida Echinacea purpurea
  • 44. Uncertainty with Production of Echinacea Products  Ethanol extracts produce higher levels of alkylamides and phenolics  Block inflammatory response, suppressing symptoms of with infection  More concentrated in roots  Signatures?  Echinacoside (phenolic) in E. angustifolia not E. purpurea.  Echinacin (alkylamide) in E. angustifolia and E. pallida.
  • 45. Uncertainty with Echinacea  Water extracts contain polysaccharides and glycoproteins (arabinorhamnogalactan)  Enhance immunity by increasing production of cytokines  Appear to be present in aerial parts
  • 46. Phenylpropanoid Derivatives  Cichoric acid - hydroxycinnamic acid  Cynarin – hydroxycinnamic acid  Chlorogenic acid - hydroxycinnamic acid, and an intermediate in lignin biosynthesis  Echinacoside - caffeic acid glycoside  Verbascoside - caffeoyl phenylethanoid glycoside
  • 47. Alkamides (Alkylamides)  Most abundant in roots of E. purpurea and E. angustifolia  Much lower amounts in aerial parts E. purpurea and E. angustifolia  As a whole, much lower amounts in E. pallida Mudge, E. et al. (2011) Analysis of alkylamides in Echinacea plant materials and dietary supplements by UFLC with diode array and MS detection. J. Agri. Food Chem. 59: 8086-8094.
  • 48. E. purpurea Perry, NB et al. (1997) Alkamide levels in Echinacea purpurea: a rapid analytical method revealing differences among roots, rhizomes, stems, leaves and flowers. Planta Med. 63: 58-62
  • 49. Root Tissue 1. cynarin 2. echinacoside 3. cichoric acid 4. echinacoside derivative 5. verbascoside 6. alkamide 7. alkamide 8. alkamide 9. alkamide Sloley, DB et al. (2001) Comparison of chemical components and antioxidant capacity of different Echinacea species. J Pharm. Pharmacol. 53:849-857
  • 50. Mean alkamide levels (mg/g dry weight) in different parts of E. purpurea followed by standard deviation. Bold significantly different (P<0.01)
  • 51. E. Purpurea and Quality Control  Alkamide distribution flower heads important to quality control  13 polyacetylene artifacts formed during storage, since they are found in dried but not fresh roots of E. pallida.  Second cut harvest contain cichoric acid no alkamides  Arabinogalactans - microbiological degradation
  • 52. Cichoric Acid  Degraded during processing and juice extraction  This occurs with many plants – black tea  Ascorbic acid (5mM) or EtOH (≥ 45%) inhibits degradation  short term during extraction  longer term storage Nusslein, B. et al. (2000). J. Nat. Prod. 63: 1615-1618.
  • 53. E. purpurea Cultivar Screening Trout Lake Farm  Mechanical harvesting  Flower heads, size and uniformity of flowering time  Large smooth leaves (leaf hairs capture dirt)  Deep purple color  Intense tongue tingle (Letchamo et al. 1999)
  • 54.  Field of 2 million identified 420 optimal plants  Used organoleptic and HPLC analysis to select 360 propagation lines  20-30 of each line replanted in three different locations  Used phytochemical analysis on the aerial parts to analyze at 4 stages of flower development
  • 56.