An NIDDK Resource dknet.org
dkNET Hypothesis Center:
Making Bioinformatics Tools Accessible
dkNET Webinar
September 24, 2021
An NIDDK Resource dknet.org
About dkNET
• Research resource information portal for biomedical researchers
• Information network to connect DK researchers and NIH-funded
resources
• Funded by National Institute of Health (NIH) - National Institute of
Diabetes and Digestive and Kidney Diseases (NIDDK)
• Developed and maintained by the FAIR Data Informatics Laboratory
(fdilab.org) at UCSD (Supports major informatics projects in
biomedicine)
An NIDDK Resource dknet.org
○ Resource Reports: helps researchers find and evaluate resources
○ Authentication Reports: assists researchers in preparing NIH authentication plans
○ FAIR Data Services: assists researchers in finding data repositories and standards
for preparing data management plans
○ Discovery Portal: connects researchers to more than 200 biomedical databases
○ Hypothesis Center: analyze and explore diverse data to generate or test research
hypotheses
5 AREAS IN THE PORTAL
https://www.youtube.com/channel/UCwukSrB8L61Fhwjv3x20lOQ/playlists
An NIDDK Resource dknet.org
How Can dkNET Help Researchers?
Construct a
hypothesis
Ask a question
Do background
research
Plan
experiments
Collect and
analyze data Publish
results
Discovery Portal Hypothesis Center Resource Reports
Authentication
Reports
Information
Material
Data
Tools
Funded grant and
funding opportunities
Literature
Tutorials
Resource Reports
Hypothesis Center
FAIR Data Resources
Data Management
Data Repositories
Resource Reports
Cite RRID
Track Resources
Resource Identification
Authentication plans
NIH Mandates on Rigor
and Reproducibility for
grant submission
Significant growth of
available data and online
tools and resources
An NIDDK Resource dknet.org
dkNET
Portal
dknet.org
An NIDDK Resource dknet.org
Stories of Discovery
An NIDDK Resource dknet.org
Stories
of
Discovery
An NIDDK Resource dknet.org
Launch Tutorials
An NIDDK Resource dknet.org
Selecting
a Tutorial
An NIDDK Resource dknet.org
Hypothesis Center Tutorials
An NIDDK Resource dknet.org
Tutorial
Overview
An NIDDK Resource dknet.org
Learning
Goals
An NIDDK Resource dknet.org
Detailed
Tutorial
An NIDDK Resource dknet.org
Finishing
Tutorial
An NIDDK Resource dknet.org
Linking Multiple Tools / Resources
An NIDDK Resource dknet.org
Interactive
Tutorial
Launch Next
Tutorial
An NIDDK Resource dknet.org
Resource
Overview
An NIDDK Resource dknet.org
Integrate
with
Resource
Reports
An NIDDK Resource dknet.org
External Tutorials
An NIDDK Resource dknet.org
An NIDDK Resource dknet.org
Informational Content
An NIDDK Resource dknet.org
Bioinformatics Tool Overview
An NIDDK Resource dknet.org
Bioinformatics
Resource
Overview
An NIDDK Resource dknet.org
Resource
Overview
An NIDDK Resource dknet.org
Resources
Overview
An NIDDK Resource dknet.org
Tutorial
Overview
An NIDDK Resource dknet.org
How Can You Contribute...
● Suggestions of online tools and resources
● Suggestions of use cases
○ multi-resource tutorials
● Information on tutorials that already exist
● Contribute stories of discovery
● Develop tutorials within the Hypothesis
Center
info@dknet.org
An NIDDK Resource dknet.org

dkNET Webinar: dkNET Hypothesis Center Live Demo 09/24/2021

  • 1.
    An NIDDK Resourcedknet.org dkNET Hypothesis Center: Making Bioinformatics Tools Accessible dkNET Webinar September 24, 2021
  • 2.
    An NIDDK Resourcedknet.org About dkNET • Research resource information portal for biomedical researchers • Information network to connect DK researchers and NIH-funded resources • Funded by National Institute of Health (NIH) - National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) • Developed and maintained by the FAIR Data Informatics Laboratory (fdilab.org) at UCSD (Supports major informatics projects in biomedicine)
  • 3.
    An NIDDK Resourcedknet.org ○ Resource Reports: helps researchers find and evaluate resources ○ Authentication Reports: assists researchers in preparing NIH authentication plans ○ FAIR Data Services: assists researchers in finding data repositories and standards for preparing data management plans ○ Discovery Portal: connects researchers to more than 200 biomedical databases ○ Hypothesis Center: analyze and explore diverse data to generate or test research hypotheses 5 AREAS IN THE PORTAL https://www.youtube.com/channel/UCwukSrB8L61Fhwjv3x20lOQ/playlists
  • 4.
    An NIDDK Resourcedknet.org How Can dkNET Help Researchers? Construct a hypothesis Ask a question Do background research Plan experiments Collect and analyze data Publish results Discovery Portal Hypothesis Center Resource Reports Authentication Reports Information Material Data Tools Funded grant and funding opportunities Literature Tutorials Resource Reports Hypothesis Center FAIR Data Resources Data Management Data Repositories Resource Reports Cite RRID Track Resources Resource Identification Authentication plans NIH Mandates on Rigor and Reproducibility for grant submission
  • 5.
    Significant growth of availabledata and online tools and resources
  • 6.
    An NIDDK Resourcedknet.org dkNET Portal dknet.org
  • 7.
    An NIDDK Resourcedknet.org Stories of Discovery
  • 8.
    An NIDDK Resourcedknet.org Stories of Discovery
  • 9.
    An NIDDK Resourcedknet.org Launch Tutorials
  • 10.
    An NIDDK Resourcedknet.org Selecting a Tutorial
  • 11.
    An NIDDK Resourcedknet.org Hypothesis Center Tutorials
  • 12.
    An NIDDK Resourcedknet.org Tutorial Overview
  • 13.
    An NIDDK Resourcedknet.org Learning Goals
  • 14.
    An NIDDK Resourcedknet.org Detailed Tutorial
  • 15.
    An NIDDK Resourcedknet.org Finishing Tutorial
  • 16.
    An NIDDK Resourcedknet.org Linking Multiple Tools / Resources
  • 17.
    An NIDDK Resourcedknet.org Interactive Tutorial Launch Next Tutorial
  • 18.
    An NIDDK Resourcedknet.org Resource Overview
  • 19.
    An NIDDK Resourcedknet.org Integrate with Resource Reports
  • 20.
    An NIDDK Resourcedknet.org External Tutorials
  • 21.
  • 22.
    An NIDDK Resourcedknet.org Informational Content
  • 23.
    An NIDDK Resourcedknet.org Bioinformatics Tool Overview
  • 24.
    An NIDDK Resourcedknet.org Bioinformatics Resource Overview
  • 25.
    An NIDDK Resourcedknet.org Resource Overview
  • 26.
    An NIDDK Resourcedknet.org Resources Overview
  • 27.
    An NIDDK Resourcedknet.org Tutorial Overview
  • 28.
    An NIDDK Resourcedknet.org How Can You Contribute... ● Suggestions of online tools and resources ● Suggestions of use cases ○ multi-resource tutorials ● Information on tutorials that already exist ● Contribute stories of discovery ● Develop tutorials within the Hypothesis Center info@dknet.org
  • 29.