2. Data in 3′aQTLatlas
we analyzed 15253 RNA-seq samples across
49 human tissues isolated from 838
individuals (data from GTEx, version 8) and
identified approximately 0.4 million common
genetic variants associated with the APA.
3. Part 1: 3′aQTLs search across tissues
Part 2: Browser view 3′aQTLs
Part 3: Boxplot view 3′aQTLs
Part 4: GWAS compare with 3′aQTLs
Part 5: Disease/trait-associated 3′aQTLs
4. Part 1: 3′aQTLs search across tissues
Step1: Quick search by gene symbol or rs ID
(e.g. IRF5 or rs10954213)
Step2: Filter 3′aQTLs by tissue
Step3: Filter 3′aQTLs by key words
Step4: Browser view this 3′aQTL
Step5: Boxplot view this 3′aQTL
5. Part 2: Browser view 3′aQTLs
Search by gene symbol, rs ID or genome position
(e.g. IRF5 or rs10954213 or chr7:128687612-129200035)
Mouse click to see
detailed information
Mouse click to config
tracks
Download SVG
6. Part 3: Boxplot view 3′aQTLs
Quick guide
Step1: Click to load
example data
Step2: Click to plot
boxplot
Step3: Download
PDF file
7. Part 4: GWAS compare with 3′aQTLs
Quick guide
Step1: Click to load
example data
Step2: Click to plot Step3: Download
PDF file
8. Part 5: Disease/trait-associated 3′aQTLs
Step1: Search a disease/trait
type (e.g. Alzheimer)
Step2: Select a tissue (e.g.
Whole Blood)
10. Citation and Contact
3′aQTLatlas: an atlas of 3′UTR alternative polyadenylation quantitative trait
loci across human normal tissues
Ya Cui1,, …, Lei Li1 and Wei Li1,*
Citation:
Ya Cui
School of Medicine, University of California Irvine, California, USA
Email: yac7@uci.edu
Wei Li
School of Medicine, University of California Irvine, California, USA
Email: wei.li@uci.edu
Contact:
