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SAURASHTRA UNIVERSITY
DEPARTMENTAL PROFILE
Department of Biosciences
UGC – Centre of Advanced Study (CAS)
in
Arid Zone Biology
www.saurashtrauniversity.edu
Actinobacteria from Extreme
Environment:
Diversity and Biocatalytic Potential
Satya P. Singh
Department of Biosciences
Saurashtra University, Rajkot(Gujarat)
satyapsingh@yahoo.com
spsingh@sauuni.ac.in
The Framework of the Talk
‱Extreme Habitats and Actinomycetes
‱Molecular diversity Actinomycetes
‱Biochemical & Genetic Characteristics of Enzymes
Domesticating Microbes
Newer Applications Got into the Way
‱Understanding the fundamental Processes of Life (
Central Dogma of Life)
‱Ability to manipulate Genes and Genomes
Biological factories & Expression of Foreign Genes
‱Tools to rapidly sequence the DNA and proteins
‱Search for New Microbial Potential
Need of the Hour
Exploration of newer habitats, particularly
extremes ones for environmental and
Biotechnological applications
Evolving the microbial potential by molecular
approaches such gene shuffling and Directed
evolution
Evolving unique & novel biocatalytic capabilities
for industrial & Environmental applications
Adaptations to the Extremity
At Various levels
Cell Morphology
Cell envelops & Appendages: CW, CM, Flagella, Capsule
Membrane Transport
Metabolism
Structure & Stability of Macromolecules
Thermodynamic adaptations
Haloalkaliphilic/Salt-tolerant Alkaliphilic
actinomycetes
Actinomycetes
‱ Gram positive, high G+C %
‱ Spore forming bacteria; having thin, long,
branched mycelia.
‱ About 40 families, 170 Generas, 2000 species
‱ Thermophilic actinomycetes are omnipresent; but
are widely found in compost and hay
‱ Halophilic actinomycetes are less explored
Light and Electron microscopic
examinations
Cultural characterization of actinomycetes
Sheikh, M., Rathore, D.S., Gohel, S.D. and Singh S.P. 2019. Indian Journal of Geo-Marine Sciences (CSIR-
NISCARE), 48(12), 1896-1901
Rathore, D.S., Sheikh, M.A., Gohel, S.D. and Singh, S.P. (2019) Journal of Marine Biological Association of
India (JMBAI), CMFRI Cochin, India 61(1): 21-27
Gohel, S.D. and Singh, S.P. (2015, 2016, 2018) IJBIOMAC, Geomicrobiology
Thakrar, Foram. and Singh, S.P. (2018, 2019 Bioresource Technology, Applied Biochemistry and
Microbiology (Russia)
Comparative outline of the morphological features of the isolates
Mit-1 RJT-1 RJT-2 Diu-1 Diu-2 Diu-3 Diu-4 Di-J-1
Mycelial structure
 filamentous + + + + + + + +
 Curved, hook
Shaped mycelia - - + - - - - -
 Fragmentation + - - + - + - -
Sporulation
starts After
. 5 >9 6 7 >9 7 >9 >9
(days)
Morphology of spores
 Shape Elongated - Oval Spherical - Elongated - -
 Surface Smooth - Smooth Smooth - Smooth - -
 Number in long chain - 4-5 8-10 - - 1-3 -
chain
Cell morphology and Gram reaction Cultural characterization
Pigmentation profile
Dwivedi, Purna, Sharma, A. K. and Singh, S.P. 2021. Biochemical properties and repression studies of an alkaline serine protease
from a haloalkaliphilic actinomycete, Nocarpdiopsis dassonvillei subsp. albirubida OK-14. Biocatalysis and Agricultural
Biotechnology, 35:1-7 (Elsevier; IF: 0.90), DOI: https://doi.org/10.1016/j.bcab.2021.102059
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the Gujarat
Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
0 10 20 30 40 50
H2S Production
Indole
Oxidase
Nitrate
Catalase
Urea Utilization
MR
VP
Phenyl alanine
Isolates
Biochemical fingerprinting
0 5 10 15 20 25 30 35
Arabinose
Rhamnose
Xylose
Raffinose
Mannose
Inositol
Lactose
Fructose
Trehalose
Cellobiose
Maltose
Mannitol
Isolates
Sugar utilization profile
Antibiotic sensitivity profile on the basis of mode of action (a: U- I,
b: U- II and c: U- III)
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and
Phylogeny of Actinomycetes of Arabian Sea along the Gujarat Coast.
Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI:
10.1080/01490451.2020.1860165
0
5
10
15
20
25
F243 &
R513
F984 &
R1378
U1F & R U2F& R NF & R
Total
no.
of
isolates
Chemotaxonomic features
16S rRNA gene amplification profile
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the
Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
Molecular Approaches to study Actinomycetes
Rathore, D. R., Sheikh, M., Gohel G.D, and Singh, S.P. 2021. Genetic and phenotypic heterogeneity of the
Nocardiopsis alba strains of sea water. Current Microbiology, 78: 1377-1387 (Springer; IF: 1.75),
DOI: 10.1007/s00284-021-02420-0
Dwivedi, Purna, Sharma, A. K. and Singh, S.P. 2021. Biochemical properties and repression studies of an alkaline
serine protease from a haloalkaliphilic actinomycete, Nocarpdiopsis dassonvillei subsp. albirubida OK-14. Biocatalysis
and Agricultural Biotechnology, 35:1-7 (Elsevier; IF: 0.90), DOI: https://doi.org/10.1016/j.bcab.2021.102059
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the
Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
Gohel, S. D. and Singh S.P. 2018. Molecular phylogeny and diversity of the salt-tolerant alkaliphilic actinobacteria
inhabiting Coastal Gujarat, India. Geomicrobiology Journal, 35:9, 775-789
Dangar, K. G., Kalasava,A. B., Dave, A. V. and Singh S.P. 2018. Molecular diversity of Nocardiopsis alba sp.
isolated from the coastal region of Gujarat, India. Journal of Cell &Tissue Research, 18(3) 6559-6570.
Thakrar, F.J., Kikani, B.A., Sharma, A.K. and Singh S.P. 2018. Stability of alkaline proteases from haloalkaliphilic
actinobacteria probed by circular dichroism spectroscopy. Applied Biochemistry and Microbiology (Russia), 54(6),
591-602
Sheikh, M., Rathore, D. S., Gohel, S. D. and Singh S.P. 2018. Marine actinobacteria associated with the invertebrate
hosts: a rich source of bioactive compounds: A Review. (Invited contribution) Journal of Cell &Tissue Research, 18
(01), 6361-6374.
primer sequence 1st step 2nd step 3rd step
No. of
cycles
Expected
bp
denatura
tion
annealing extention
U1 5’-AGAGTTTGATCCTGGCTCAG-3’
94Âșc - 10
min.
94ÂșC – 30s
72Âșc –
10min
30 1500 bp
AAGGAGGTGATCCAGCCGCA-3’ 56ÂșC – 30s
72ÂșC – 60s
U2 5’ CCAGCAGCCGCGGTAATACG-3’
94Âșc –
5min
94Âșc – 1min
72Âșc –
10min
30 1000 bp
5’ ATCGGCTACCTTGTTACGACTTC 55Âșc – 1min
72Âșc – 1min
N -F/R 5’-CGCATAGGGTGCTGGTGGAAAG-3’
94Âșc –
4min
94Âșc – 30s
72Âșc –
10min 30 1120 bp
5’-GAGGTCGGGTTGCAGACTTCG-3’ 56Âșc – 30s
72Âșc - 2min
Strep B/E 5’-ACAAGCCCTGGAAACGGGGT-3’
95Âșc –
8min
95Âșc – 1min
72Âșc –
10min
30 520 bp
5’-CACCAGGAATTCCGATCT-3’ 54Âșc – 40s
72Âșc – 2min
Strep B/F
5’-ACAAGCCCTGGAAACGGGGT-3’
95Âșc –
8min
95Âșc – 1min
72Âșc –
10min
30 1170 bp
5’-ACGTGTGCAGCCCAAGACA-3’
58Âșc – 40s
0.8% agarose gel show PCR products of isolates from Okha Madhi amplified with (a) U1
primer at 52.3°C 55.3°C 59.4°C: lane-1 Medium range DNA ruler lane-2,3,4 OM-3, lane-5,6,7
OM-4 lane-8,9,10 OM-5 lane-11,12,13 OM-6 lane-14 Super Mix DNA ladder, lane-15,16,17
OM-8 lane-18,19,20 OM-9 lane-21,22,23 OM-11 (b) U2 primer at 52.7°C, 55.9°C, 59.2°C:
lane-1 High range DNA ruler lane-2,3,4 OM-1 lane-5,6,7 OM-3 lane-8,9,10 OM-4 lane-11
Super Mix DNA ladder, lane-12,13,14 OM-6 lane-15,16,17 OM-7 lane-18 High range DNA
ruler lane-19,20,21 OM-8 lane-22,23,24 OM-9 lane-25,26,27 OM-11
Gohel, S. D. and Singh S.P. 2018. Molecular phylogeny and diversity of the salt-tolerant alkaliphilic
actinobacteria inhabiting Coastal Gujarat, India. Geomicrobiology
Journal, DOI: 10.1080/01490451.2018.1471107, 35:9, 775-789 (IF 1.5)
0.8% agarose gel show PCR products of isolates Okha Madhi amplified with (a) StrepB/E
(Lane 2-24) at 50.7°C, 53.9°C, 56.7°C and StrepB/F (Lane 26-28) at 54.1°C, 58.1°C, 60.0°C
lane-1 High range marker (10 kb), lane-2,3,4 OM-3 lane-5,6,7 OM-4 lane-8 High range
marker, lane-9,10,11 OM-5 lane-12 High range marker, lane-13,14,15 OM-8 lane-16,17,18
OM-9 lane-19,20,21 OM-10 lane-22,23,24 OM-11 lane-25: High range marker, lane-26,27,28
OM-2 (b) N F/R primer at 53.3°C, 56.4°C, 60.0°C lane-1 high range marker (10 kb), lane-2,3,4
OM-6 lane-5,6,7 OM-8 lane-8,9,10 OM-9 lane-11,12,13 OM-11 lane-14,15,16 OM-12
16S rRNA amplification profile
of isolates from A) Okha Madhi
and B) Okha site
U1
U2
StrepB/E
StrepB/F
N-F/R
OK-1
OK-2
OK-3
OK-4
OK-5
OK-6
OK-7
OK-8
OK-9
OK-10
U1
U2
StrepB/E
StrepB/F
N-F/R
OM-1
OM-2
OM-3
OM-4
OM-5
OM-6
OM-7
OM-8
OM-9
OM-10
OM-11
OM-12
Phylogenetic tree constructed by the neighbor-joining method conducted using
BioEdit version 7.2.5
Diversity Assessment : Phylogenetic Tree
Sea Water actinomycetes
Pre-monsoon Monsoon
Post-monsoon
Dalip Rathore, Mahejbin Sheikh and S P Singh, 2019, 2020. 2021
Amplified ribosomal DNA restriction analysis (ARDRA)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 1 2 3 4 5 6 7
A B
Abbreviations:
A: 1- Marker, 2-D2, 3-OK-24, 4-OK-4, 5-OK-17,
6-OK-18, 7-OK-8, 8-D8, 9-OK-19, 10-OK-13, 11-
OK-22, 12-OK-20, 13-OK-1, 14-S1, 15-D-5
B: 1-Marker, 2-S2, 3-OK-23, 4-OK-10, 5-OK-2, 6-
OK-6, 7-OK-14 (Left to right position)
Production of Proteases
Production of Proteases
Extra cellular enzyme
detection
 Gohel, S. and Singh S.P. 2015. . International Journal of
Biological Macromolecules (IJBIOMAC). DOI:
10.1016/j.ijbiomac.2014.08.008, Vol 74: 421-429 (IF
3.00).
 Gohel, S. and Singh S.P. 2013. International Journal of
Biological Macromolecules (IJBIOMAC) 56: 20– 27 (IF
2.45).
 Gohel, S. and Singh S.P. 2012., J Chromatography-
B,889– 890, 61– 68 (IF 2.9).
 Gohel, S. and Singh S.P. 2012. International Journal of
Biological Macromolecules (IJBIOMAC) 50: 664– 671
(IF 2.45).
0
20
40
60
80
100
120
0
0.5
1
1.5
2
2.5
3
0 1 2 3 4 5 6 7 8
OM-6
0
100
200
300
400
500
600
700
0
0.5
1
1.5
2
2.5
3
0 1 2 3 4 5 6 7 8
OK-5
Growth (■) and
protease production
(■) among OM-6
and OK-5 isolates at
increasing number
of amino acids at
1% concentration of
each
Growth
at
540nm
Protease
activity
(U/ml/min)
Protease
activity
(U/ml/min)
Growth
at
540nm
Increasing number of amino acids
Increasing number of amino acids
1. Phenylalanine,
2. Leucine
3. Methionine,
4. Tyrosine
5. Aspartic acid
6. Arginine
7. Histidine
8. Asparagine
Effect of combinations of amino acids on
protease production
0
0.5
1
1.5
2
2.5
0 1 2 3 4 5 6
No. of amino acids
Growth
(A
540
)
0
50
100
150
200
250
Activity
(U/ml)
Growth Activity
1) Phe ala
2) Phe ala + leu
3) Phe ala + leu + met
4) Phe ala + leu + met + tyr
5) Phe ala + leu + met + tyr + asp
6) Phe ala + leu + met + tyr + asp + arg
0
0.5
1
1.5
2
2.5
C
ontrol
M
et
A
la
H
is
Tyr
P
he
A
rg
Leu
A
sn
Amino acids (1%, w/v)
Growth
(A
540
)
0
20
40
60
80
100
120
140
Activity
(U/ml)
0
0.5
1
1.5
2
2.5
Control Molasses Wheat
flour
Whey
Crude source (1%, w/v)
Growth
(A
540
)
0
30
60
90
120
150
Activity
(U/ml)
Growth (■)
Activity
(■)
Effect of amino acids and crude nutritional
sources on growth and protease production
Amino acids
Crude sources
Effect of cations and media on protease production
0
1
2
3
4
GB SB CMB SCB AB GA GAB GCB GGB
Media
Growth
(A540)
0
25
50
75
100
125
150
Activity
(U/ml)
0
0.5
1
1.5
2
2.5
KCl MnCl2 MgCl2 CaCl2
Cations (0.5 %, w/v)
Growth
(A540)
0
100
200
300
400
Activity
(U/ml)
Growth (■)
Activity (■)
cations
Media
Deproteinization studies using crustaceous crab shell
The crab (a) used in the present study collected from Somnath Beach (Western; Arabian Seawater); (b) Effect of crustaceans crab shell
(0-3.5 % w/v) on the growth and protease production in Nocardiopsis dassonvillei OK-18 at 30°C under shake flask (120 rev/min)
conditions in minimal medium
0
10
20
30
40
50
60
70
80
%DP
a
b
Concentration (%)
Effect of deproteinization on crustaceans crab shell at 30°C
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Biochemical, thermodynamic and structural characteristics of a
biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18 International
Journal of Biological Macromolecules (IJBIOMAC), 153:680-696, DOI: 10.1016/j.ijbiomac.2020.03.006 (IF 5.16)
Characteristics of Proteases
International Journal of Biological Macromolecules
2020
Biochemical, thermodynamic and structural characteristics of a biotechnologically
compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18
Amit K. Sharma, Bhavtosh A. Kikani, Satya P. Singh⁎
UGC-CAS Department of Biosciences, Saurashtra University, Rajkot 360 005, Gujarat, India
0
100
200
300
400
500
600
37 50 60 70 80 90 100
Activity(U/ml)
Temp(oC)
Temperature optima
OM-4 OM-6 OM-11 Okha-5
Okha-7 Mit7 Tata-5 Tata-13
0
50
100
150
200
250
300
350
400
450
500
OM-4 OM-6 OM-11 Okha-1 Okha-5 Okha-7 Mit-7 Tata-5 Tata-
13
Activity(U/ml)
Optimum enzyme activity in different nine isolates
Activity(U/ml)
0
100
200
300
400
500
600
700
7 8 9 10 11
Activity(U/ml)
pH
pH optima
OM-6 OM-4 Okha-1 Okha-7 OM-11
Okha-5 Mit-7 Tata-5 Tata-13
0
100
200
300
400
500
37 50 60 70 80 90
%
Residual
activity
Temp (oC)
OM-6
0 2 5 7 10 20 50 100
0
100
200
300
400
500
600
700
800
900
37 50 60 70 80 90
%
Residual
activity
Temp (oC)
OK-5
0 2 5 7 10 20 50 100
Effect of Ca2+ on temperature optima and enzyme activity of
purified proteases from both OM-6 and OK-5 isolates at 0 - 100mM
concentration
Enzyme system ΔH*
(kJ/mol)
ΔS*
(J/mol)
E
(kJ/mol)
Purified enzyme [A] 31.62 -184.75 34.34
Purified enzyme [A] at varying pH
A + pH 8 24.41 -203.61 27.12
A + pH 9 31.62 -184.75 34.34
A + pH 10 36.45 -171.09 36.45
A + pH 11 33.4 -181.31 33.4
Purified enzyme [A] at varying salt concentrations
A + 0.5 M 33.51 -182.08 36.22
A + 1.0 M 30.96 -192.07 33.67
A + 2.0 M 44.87 -143.64 33.67
A + 3.0 M 39.22 -158.60 41.94
A + 4.0 M 44.32 -141.04 47.03
Purified enzyme [A] at Na-glutamate and CaCl2
A + 30 % Na-glutamate 18.64 -201.42 21.35
A + 5 mM CaCl2 32.7 -195.85 35.42
A + 10 mM CaCl2 32.63 -195.69 35.34
Changes in enthalpy, entropy and activation energy
( SEA WATER Actinomycetes)
Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Biochemical, thermodynamic and structural characteristics of a
biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18
International Journal of Biological Macromolecules (IJBIOMAC), 153:680-696, DOI:
10.1016/j.ijbiomac.2020.03.006 (IF 5.16)
Enzyme system
ΔG* (kJ/mol) for deactivation of protease
30 °C 50 °C 60 °C 70 °C 80 °C
Purified enzyme [A] 87.63 91.33 93.17 95.02 96.87
Purified enzyme [A] at varying pH
A + pH 8 86.14 90.21 92.24 94.28 96.32
A + pH 9 87.63 91.33 93.17 95.02 96.87
A + pH 10 88.32 91.74 93.45 95.16 96.87
A + pH 11 88.36 91.99 93.8 95.62 97.43
Purified enzyme [A] at varying salt concentrations
A + 0.5 M 88.71 92.35 94.17 95.99 97.81
A + 1 M 89.19 93.03 94.95 96.87 98.79
A + 2 M 88.42 91.29 92.73 94.17 95.6
A + 3 M 87.3 90.48 92.06 93.65 95.23
A + 4 M 87.08 89.9 91.31 92.72 94.13
Purified enzyme [A] at Na-glutamate and CaCl2
A + 30 % Na-glutamate 79.7 83.73 85.75 87.76 89.79
A + 5 mM CaCl2 92.07 95.99 97.95 99.91 101.86
A + 10 mM CaCl2 91.95 95.86 97.82 99.78 101.73
Enzyme system
ΔG* (kJ/mol) for deactivation of protease
30 °C 50 °C 60 °C 70 °C
Purified enzyme [A] 88.20 90.93 92.30 93.66
Purified enzyme [A] at varying pH
A + pH 8 88.45 91.31 92.74 94.17
A + pH 9 87.93 91.31 92.99 94.68
A + pH 10 88.20 90.93 92.30 93.66
A + pH 11 86.85 90.43 92.22 94.01
Purified enzyme [A] at varying salt concentrations
A + 0.5 M 87.65 92.0 94.18 96.3
A + 1 M 88.33 93.41 95.94 98.48
A + 2 M 88.12 92.71 95.0 97.29
A + 3 M 87.05 91.62 93.91 96.19
A + 4 M 86.06 90.25 92.35 94.44
Purified enzyme [A] at Na-glutamate and CaCl2
A + 30 % Na-glutamate 79.70 83.73 85.74 87.75
A + 5 mM CaCl2 93.89 97.79 99.73 101.6
A + 10 mM CaCl2 88.72 92.66 94.63 96.60
Determination of the ΔG* values for the thermal deactivation of the purified proteases from
a)Nocardiopsis dassonvillei OK-18 & b) Nocardiopsis sp. D-5
a b
Effect of osmolytes, inhibitors, metal ions, oxidizing and
reducing agents and surfactants
Gohel, S. D., & Singh, S. P. (2013). Characteristics and thermodynamics of a thermostable protease from a
salt-tolerant alkaliphilic actinomycete.International journal of biological macromolecules, 56, 20-27.
Structure & Function analysis of the
enzymes
-4
-2
0
2
4
200 210 220 230 240
0M 3M 6M Parameters
Secondary structure prediction by K2D3
software
α -helix structures
(%)
ÎČ -sheet structures
(%)
Incubation temperatures (°C)
50 °C 1.65 40.96
70 °C 1.89 40.68
90 °C 2.76 39.7
pH
8 1.77 40.76
10 1.89 40.68
Salt concentrations (M)
1M+ 50°C 2.13 40.47
2M+50°C 1.65 40.95
1M +70°C 1.93 40.81
1M+90°C 2.87 39.17
Urea concentrations (M)
4M 1.77 40.81
8M 1.55 41.22
Gn-HCl concentrations (M)
3M 1.41 41.59
6M 2.50 40.08
Estimation of the structural changes in the purified OK-18 protease by K2D3 software
Wavelength (nm)
MRE
Gn-HCl
Sharma, Kikani & Singh, 2020, IJBIOMAC
ALKALINE PROTEASE: PRODUCTION AND
CATALYSIS UNDER NON-AQUEOUS
CONDITIONS
Growth behavior of Mit-1 in the presence of Organic
solvents
Control Xylene
Butanol
Benzene
Comparison of specific enzyme production with
complex medium and with organic solvent as the
sole source of carbon (0.1%)
Medium Specific enzyme Comparative
production fold
(Enzyme activity/growth)
Complex medium 49 1.0
(gelatin broth)
MM* + Butanol 2400 48.9
MM+ Xylene 1083 22.1
MM+ Acetone 268 5.5
MM+ Benzene 73.8 1.5
MM+ Ethanol 20.21 0.412
* MM = Minimal Medium
Jignasha Thumar and S P Singh 2010
Organisms
NCBI
Accession
number
Gene cloned Host Reference
Haloalkaliphilic bacterium OME12 EU680960 Alkaline protease
BL21
(DE3)
Purohit and Singh
2013
Proc. Biochem
Metagenome from salt enriched
soil
--------------- Alkaline protease
BL21
(DE3)
Purohit and Singh
2013
IJBIOMAC
Oceanobacillus ihyehensis OME18 EU680961 Alkaline protease
BL21
(DE3)
Purohit and Singh
2013
Proc. Biochem
Alkalibacillus haloalkaliphilus C-5 --
Serine alkaline
protease
E.coli
(DH5α)
Rawal et al 2012
Haloakaliphilic bacteria Ve2-20-91 JX296114
Serine alkaline
protease
E.coli
(DH5α)
Raval et al. 2015
Ann Microbiology
Haloalkaliphilic actinomycetes
Serine alkaline
protease
BL21
(DE3)
Gohel & Singh,
2012
IJBIOMAC
Bacillus lehensis JO-26 ----------
Serine alkaline
protease
BL21
(DE3)
Hitarth Bhatt and S
P Singh 2019
( Unpublished)
Cloning, Expression and structure and function
relationship
of proteases from Haloalkaliphilic bacteria & Actinobacteria
Bio-databases designed
Dr. Bharat Joshi (Canada)
Dr. Manish Bhatt ( Canada)
Dr. Rajesh K. Patel ( Professor, V N University of
South Gujarat, Surat)
Dr. Anju Mittal ( USA)
Dr. Mital Dodia (Scientist, Canada)
 Dr.. Jignasha Thumar ( Asstt Professor, Gandhinagar)
Dr. Rupal Joshi (ZRC, Ahmedabad)
Dr. Chetna Rajyaguru (Asstt Professor, Rajkot)
Ms. Geera Mankad (Associate Professor, Rajkot)
Dr. Chirantan Raval ( Asst Prof., Govt College)
 Dr. Megha Purohit ( Scientist and Entrepreneur,
Canada)
Dr. Himanshu Bhimani (Assoc Prof, Navsari Ag Univ)
Dr. Bhavtosh Kikani (Asstt Prof. CHARUSAT)
Dr. Vikram Raval (Asstt Prof. Gujarat University)
Dr. Sangeeta Gohel (Asstt Prof. Saurashtra University)
Dr. Sandeep Pandey (Scientist, Pharma, Daman)
Dr. Viral Akbari ( Scientist, UK)
Dr. Rushit Shukla (Asstt Prof. Christ College, Rajkot)
Dr. Amit Sharma (Scientist, ZRC, Ahmedabad)
Dr. Kruti Dangar (Asstt Prof. Saurashtra University)
Dr. Atman Vaidya ( Biology Teacher & Entrepreneur)
Mr. Hitarth Bhatt (Asstt Prof. Virani College, Rajkot)
Ms. Rupal Pandya (USA)
Ms. Foram Thakrar (Ahmedabad)
Dr. Dalip Rathore ( GBRC, Gandhinagar)
Acknowledgements : Ph.D. Students
Research Team
Dr. Sangeeta Gohel, Assistant Professor
Dr. Vikram Raval, DST Young Scientist ( Now at Gujarat University
Dr. Aparna Singh, DST Women Scientist ( Now Asstt. Prof, Surat
Dr. Kalpana Rakholiya, SERB- National Post-Doctoral Fellow
Ms. Kruti Dangar, DST Women Scientist, Now Asstt prof,
Saurashtra university
&
Ph.D./M.Phil/M.Sc.Students
SPS Lab Members
Financial Support
DBT, UGC, DST, MoES, GSBTM,
Saurashtra University, Rajkot
Research Collaborations
‱IIT Delhi, New Delhi: Prof. S. K.Khare
‱DUSC, New Delhi: Prof. Sanjay Kapoor
‱NFRI, Tsukuba, Japan: Dr. Kiyoshi Hayashi ( Now at
Toyo University, Japan)
‱Griffith University, Australia
‱JNTU Hyderabad, Prof. Ch. Sasikala
‱Central University of Hyderabad, Prof. Ch. Rama Rao
Thank You

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Prof. s.p.singh.invited talk.n v patel conf. 26 feb 2020.actinobacteria from extreme environment (updated)

  • 1. SAURASHTRA UNIVERSITY DEPARTMENTAL PROFILE Department of Biosciences UGC – Centre of Advanced Study (CAS) in Arid Zone Biology www.saurashtrauniversity.edu
  • 2. Actinobacteria from Extreme Environment: Diversity and Biocatalytic Potential Satya P. Singh Department of Biosciences Saurashtra University, Rajkot(Gujarat) satyapsingh@yahoo.com spsingh@sauuni.ac.in
  • 3. The Framework of the Talk ‱Extreme Habitats and Actinomycetes ‱Molecular diversity Actinomycetes ‱Biochemical & Genetic Characteristics of Enzymes
  • 4. Domesticating Microbes Newer Applications Got into the Way ‱Understanding the fundamental Processes of Life ( Central Dogma of Life) ‱Ability to manipulate Genes and Genomes Biological factories & Expression of Foreign Genes ‱Tools to rapidly sequence the DNA and proteins ‱Search for New Microbial Potential
  • 5. Need of the Hour Exploration of newer habitats, particularly extremes ones for environmental and Biotechnological applications Evolving the microbial potential by molecular approaches such gene shuffling and Directed evolution Evolving unique & novel biocatalytic capabilities for industrial & Environmental applications
  • 6.
  • 7. Adaptations to the Extremity At Various levels Cell Morphology Cell envelops & Appendages: CW, CM, Flagella, Capsule Membrane Transport Metabolism Structure & Stability of Macromolecules Thermodynamic adaptations
  • 9. Actinomycetes ‱ Gram positive, high G+C % ‱ Spore forming bacteria; having thin, long, branched mycelia. ‱ About 40 families, 170 Generas, 2000 species ‱ Thermophilic actinomycetes are omnipresent; but are widely found in compost and hay ‱ Halophilic actinomycetes are less explored
  • 10. Light and Electron microscopic examinations
  • 11. Cultural characterization of actinomycetes Sheikh, M., Rathore, D.S., Gohel, S.D. and Singh S.P. 2019. Indian Journal of Geo-Marine Sciences (CSIR- NISCARE), 48(12), 1896-1901 Rathore, D.S., Sheikh, M.A., Gohel, S.D. and Singh, S.P. (2019) Journal of Marine Biological Association of India (JMBAI), CMFRI Cochin, India 61(1): 21-27 Gohel, S.D. and Singh, S.P. (2015, 2016, 2018) IJBIOMAC, Geomicrobiology Thakrar, Foram. and Singh, S.P. (2018, 2019 Bioresource Technology, Applied Biochemistry and Microbiology (Russia)
  • 12. Comparative outline of the morphological features of the isolates Mit-1 RJT-1 RJT-2 Diu-1 Diu-2 Diu-3 Diu-4 Di-J-1 Mycelial structure  filamentous + + + + + + + +  Curved, hook Shaped mycelia - - + - - - - -  Fragmentation + - - + - + - - Sporulation starts After
. 5 >9 6 7 >9 7 >9 >9 (days) Morphology of spores  Shape Elongated - Oval Spherical - Elongated - -  Surface Smooth - Smooth Smooth - Smooth - -  Number in long chain - 4-5 8-10 - - 1-3 - chain
  • 13. Cell morphology and Gram reaction Cultural characterization Pigmentation profile Dwivedi, Purna, Sharma, A. K. and Singh, S.P. 2021. Biochemical properties and repression studies of an alkaline serine protease from a haloalkaliphilic actinomycete, Nocarpdiopsis dassonvillei subsp. albirubida OK-14. Biocatalysis and Agricultural Biotechnology, 35:1-7 (Elsevier; IF: 0.90), DOI: https://doi.org/10.1016/j.bcab.2021.102059 Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
  • 14. 0 10 20 30 40 50 H2S Production Indole Oxidase Nitrate Catalase Urea Utilization MR VP Phenyl alanine Isolates Biochemical fingerprinting 0 5 10 15 20 25 30 35 Arabinose Rhamnose Xylose Raffinose Mannose Inositol Lactose Fructose Trehalose Cellobiose Maltose Mannitol Isolates Sugar utilization profile
  • 15. Antibiotic sensitivity profile on the basis of mode of action (a: U- I, b: U- II and c: U- III) Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
  • 16. 0 5 10 15 20 25 F243 & R513 F984 & R1378 U1F & R U2F& R NF & R Total no. of isolates Chemotaxonomic features 16S rRNA gene amplification profile Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165
  • 17. Molecular Approaches to study Actinomycetes Rathore, D. R., Sheikh, M., Gohel G.D, and Singh, S.P. 2021. Genetic and phenotypic heterogeneity of the Nocardiopsis alba strains of sea water. Current Microbiology, 78: 1377-1387 (Springer; IF: 1.75), DOI: 10.1007/s00284-021-02420-0 Dwivedi, Purna, Sharma, A. K. and Singh, S.P. 2021. Biochemical properties and repression studies of an alkaline serine protease from a haloalkaliphilic actinomycete, Nocarpdiopsis dassonvillei subsp. albirubida OK-14. Biocatalysis and Agricultural Biotechnology, 35:1-7 (Elsevier; IF: 0.90), DOI: https://doi.org/10.1016/j.bcab.2021.102059 Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Diversity and Phylogeny of Actinomycetes of Arabian Sea along the Gujarat Coast. Geomicrobiology Journal (Taylor & Francis, IF 1.90), DOI: 10.1080/01490451.2020.1860165 Gohel, S. D. and Singh S.P. 2018. Molecular phylogeny and diversity of the salt-tolerant alkaliphilic actinobacteria inhabiting Coastal Gujarat, India. Geomicrobiology Journal, 35:9, 775-789 Dangar, K. G., Kalasava,A. B., Dave, A. V. and Singh S.P. 2018. Molecular diversity of Nocardiopsis alba sp. isolated from the coastal region of Gujarat, India. Journal of Cell &Tissue Research, 18(3) 6559-6570. Thakrar, F.J., Kikani, B.A., Sharma, A.K. and Singh S.P. 2018. Stability of alkaline proteases from haloalkaliphilic actinobacteria probed by circular dichroism spectroscopy. Applied Biochemistry and Microbiology (Russia), 54(6), 591-602 Sheikh, M., Rathore, D. S., Gohel, S. D. and Singh S.P. 2018. Marine actinobacteria associated with the invertebrate hosts: a rich source of bioactive compounds: A Review. (Invited contribution) Journal of Cell &Tissue Research, 18 (01), 6361-6374.
  • 18. primer sequence 1st step 2nd step 3rd step No. of cycles Expected bp denatura tion annealing extention U1 5’-AGAGTTTGATCCTGGCTCAG-3’ 94Âșc - 10 min. 94ÂșC – 30s 72Âșc – 10min 30 1500 bp AAGGAGGTGATCCAGCCGCA-3’ 56ÂșC – 30s 72ÂșC – 60s U2 5’ CCAGCAGCCGCGGTAATACG-3’ 94Âșc – 5min 94Âșc – 1min 72Âșc – 10min 30 1000 bp 5’ ATCGGCTACCTTGTTACGACTTC 55Âșc – 1min 72Âșc – 1min N -F/R 5’-CGCATAGGGTGCTGGTGGAAAG-3’ 94Âșc – 4min 94Âșc – 30s 72Âșc – 10min 30 1120 bp 5’-GAGGTCGGGTTGCAGACTTCG-3’ 56Âșc – 30s 72Âșc - 2min Strep B/E 5’-ACAAGCCCTGGAAACGGGGT-3’ 95Âșc – 8min 95Âșc – 1min 72Âșc – 10min 30 520 bp 5’-CACCAGGAATTCCGATCT-3’ 54Âșc – 40s 72Âșc – 2min Strep B/F 5’-ACAAGCCCTGGAAACGGGGT-3’ 95Âșc – 8min 95Âșc – 1min 72Âșc – 10min 30 1170 bp 5’-ACGTGTGCAGCCCAAGACA-3’ 58Âșc – 40s
  • 19. 0.8% agarose gel show PCR products of isolates from Okha Madhi amplified with (a) U1 primer at 52.3°C 55.3°C 59.4°C: lane-1 Medium range DNA ruler lane-2,3,4 OM-3, lane-5,6,7 OM-4 lane-8,9,10 OM-5 lane-11,12,13 OM-6 lane-14 Super Mix DNA ladder, lane-15,16,17 OM-8 lane-18,19,20 OM-9 lane-21,22,23 OM-11 (b) U2 primer at 52.7°C, 55.9°C, 59.2°C: lane-1 High range DNA ruler lane-2,3,4 OM-1 lane-5,6,7 OM-3 lane-8,9,10 OM-4 lane-11 Super Mix DNA ladder, lane-12,13,14 OM-6 lane-15,16,17 OM-7 lane-18 High range DNA ruler lane-19,20,21 OM-8 lane-22,23,24 OM-9 lane-25,26,27 OM-11 Gohel, S. D. and Singh S.P. 2018. Molecular phylogeny and diversity of the salt-tolerant alkaliphilic actinobacteria inhabiting Coastal Gujarat, India. Geomicrobiology Journal, DOI: 10.1080/01490451.2018.1471107, 35:9, 775-789 (IF 1.5)
  • 20. 0.8% agarose gel show PCR products of isolates Okha Madhi amplified with (a) StrepB/E (Lane 2-24) at 50.7°C, 53.9°C, 56.7°C and StrepB/F (Lane 26-28) at 54.1°C, 58.1°C, 60.0°C lane-1 High range marker (10 kb), lane-2,3,4 OM-3 lane-5,6,7 OM-4 lane-8 High range marker, lane-9,10,11 OM-5 lane-12 High range marker, lane-13,14,15 OM-8 lane-16,17,18 OM-9 lane-19,20,21 OM-10 lane-22,23,24 OM-11 lane-25: High range marker, lane-26,27,28 OM-2 (b) N F/R primer at 53.3°C, 56.4°C, 60.0°C lane-1 high range marker (10 kb), lane-2,3,4 OM-6 lane-5,6,7 OM-8 lane-8,9,10 OM-9 lane-11,12,13 OM-11 lane-14,15,16 OM-12
  • 21. 16S rRNA amplification profile of isolates from A) Okha Madhi and B) Okha site U1 U2 StrepB/E StrepB/F N-F/R OK-1 OK-2 OK-3 OK-4 OK-5 OK-6 OK-7 OK-8 OK-9 OK-10 U1 U2 StrepB/E StrepB/F N-F/R OM-1 OM-2 OM-3 OM-4 OM-5 OM-6 OM-7 OM-8 OM-9 OM-10 OM-11 OM-12
  • 22. Phylogenetic tree constructed by the neighbor-joining method conducted using BioEdit version 7.2.5
  • 23. Diversity Assessment : Phylogenetic Tree Sea Water actinomycetes Pre-monsoon Monsoon Post-monsoon Dalip Rathore, Mahejbin Sheikh and S P Singh, 2019, 2020. 2021
  • 24. Amplified ribosomal DNA restriction analysis (ARDRA) 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 1 2 3 4 5 6 7 A B Abbreviations: A: 1- Marker, 2-D2, 3-OK-24, 4-OK-4, 5-OK-17, 6-OK-18, 7-OK-8, 8-D8, 9-OK-19, 10-OK-13, 11- OK-22, 12-OK-20, 13-OK-1, 14-S1, 15-D-5 B: 1-Marker, 2-S2, 3-OK-23, 4-OK-10, 5-OK-2, 6- OK-6, 7-OK-14 (Left to right position)
  • 27. Extra cellular enzyme detection  Gohel, S. and Singh S.P. 2015. . International Journal of Biological Macromolecules (IJBIOMAC). DOI: 10.1016/j.ijbiomac.2014.08.008, Vol 74: 421-429 (IF 3.00).  Gohel, S. and Singh S.P. 2013. International Journal of Biological Macromolecules (IJBIOMAC) 56: 20– 27 (IF 2.45).  Gohel, S. and Singh S.P. 2012., J Chromatography- B,889– 890, 61– 68 (IF 2.9).  Gohel, S. and Singh S.P. 2012. International Journal of Biological Macromolecules (IJBIOMAC) 50: 664– 671 (IF 2.45).
  • 28.
  • 29. 0 20 40 60 80 100 120 0 0.5 1 1.5 2 2.5 3 0 1 2 3 4 5 6 7 8 OM-6 0 100 200 300 400 500 600 700 0 0.5 1 1.5 2 2.5 3 0 1 2 3 4 5 6 7 8 OK-5 Growth (■) and protease production (■) among OM-6 and OK-5 isolates at increasing number of amino acids at 1% concentration of each Growth at 540nm Protease activity (U/ml/min) Protease activity (U/ml/min) Growth at 540nm Increasing number of amino acids Increasing number of amino acids 1. Phenylalanine, 2. Leucine 3. Methionine, 4. Tyrosine 5. Aspartic acid 6. Arginine 7. Histidine 8. Asparagine
  • 30. Effect of combinations of amino acids on protease production 0 0.5 1 1.5 2 2.5 0 1 2 3 4 5 6 No. of amino acids Growth (A 540 ) 0 50 100 150 200 250 Activity (U/ml) Growth Activity 1) Phe ala 2) Phe ala + leu 3) Phe ala + leu + met 4) Phe ala + leu + met + tyr 5) Phe ala + leu + met + tyr + asp 6) Phe ala + leu + met + tyr + asp + arg
  • 31. 0 0.5 1 1.5 2 2.5 C ontrol M et A la H is Tyr P he A rg Leu A sn Amino acids (1%, w/v) Growth (A 540 ) 0 20 40 60 80 100 120 140 Activity (U/ml) 0 0.5 1 1.5 2 2.5 Control Molasses Wheat flour Whey Crude source (1%, w/v) Growth (A 540 ) 0 30 60 90 120 150 Activity (U/ml) Growth (■) Activity (■) Effect of amino acids and crude nutritional sources on growth and protease production Amino acids Crude sources
  • 32. Effect of cations and media on protease production 0 1 2 3 4 GB SB CMB SCB AB GA GAB GCB GGB Media Growth (A540) 0 25 50 75 100 125 150 Activity (U/ml) 0 0.5 1 1.5 2 2.5 KCl MnCl2 MgCl2 CaCl2 Cations (0.5 %, w/v) Growth (A540) 0 100 200 300 400 Activity (U/ml) Growth (■) Activity (■) cations Media
  • 33. Deproteinization studies using crustaceous crab shell The crab (a) used in the present study collected from Somnath Beach (Western; Arabian Seawater); (b) Effect of crustaceans crab shell (0-3.5 % w/v) on the growth and protease production in Nocardiopsis dassonvillei OK-18 at 30°C under shake flask (120 rev/min) conditions in minimal medium 0 10 20 30 40 50 60 70 80 %DP a b Concentration (%) Effect of deproteinization on crustaceans crab shell at 30°C Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Biochemical, thermodynamic and structural characteristics of a biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18 International Journal of Biological Macromolecules (IJBIOMAC), 153:680-696, DOI: 10.1016/j.ijbiomac.2020.03.006 (IF 5.16)
  • 35. International Journal of Biological Macromolecules 2020 Biochemical, thermodynamic and structural characteristics of a biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18 Amit K. Sharma, Bhavtosh A. Kikani, Satya P. Singh⁎ UGC-CAS Department of Biosciences, Saurashtra University, Rajkot 360 005, Gujarat, India
  • 36.
  • 37.
  • 38. 0 100 200 300 400 500 600 37 50 60 70 80 90 100 Activity(U/ml) Temp(oC) Temperature optima OM-4 OM-6 OM-11 Okha-5 Okha-7 Mit7 Tata-5 Tata-13 0 50 100 150 200 250 300 350 400 450 500 OM-4 OM-6 OM-11 Okha-1 Okha-5 Okha-7 Mit-7 Tata-5 Tata- 13 Activity(U/ml) Optimum enzyme activity in different nine isolates Activity(U/ml) 0 100 200 300 400 500 600 700 7 8 9 10 11 Activity(U/ml) pH pH optima OM-6 OM-4 Okha-1 Okha-7 OM-11 Okha-5 Mit-7 Tata-5 Tata-13
  • 39. 0 100 200 300 400 500 37 50 60 70 80 90 % Residual activity Temp (oC) OM-6 0 2 5 7 10 20 50 100 0 100 200 300 400 500 600 700 800 900 37 50 60 70 80 90 % Residual activity Temp (oC) OK-5 0 2 5 7 10 20 50 100 Effect of Ca2+ on temperature optima and enzyme activity of purified proteases from both OM-6 and OK-5 isolates at 0 - 100mM concentration
  • 40. Enzyme system ΔH* (kJ/mol) ΔS* (J/mol) E (kJ/mol) Purified enzyme [A] 31.62 -184.75 34.34 Purified enzyme [A] at varying pH A + pH 8 24.41 -203.61 27.12 A + pH 9 31.62 -184.75 34.34 A + pH 10 36.45 -171.09 36.45 A + pH 11 33.4 -181.31 33.4 Purified enzyme [A] at varying salt concentrations A + 0.5 M 33.51 -182.08 36.22 A + 1.0 M 30.96 -192.07 33.67 A + 2.0 M 44.87 -143.64 33.67 A + 3.0 M 39.22 -158.60 41.94 A + 4.0 M 44.32 -141.04 47.03 Purified enzyme [A] at Na-glutamate and CaCl2 A + 30 % Na-glutamate 18.64 -201.42 21.35 A + 5 mM CaCl2 32.7 -195.85 35.42 A + 10 mM CaCl2 32.63 -195.69 35.34 Changes in enthalpy, entropy and activation energy ( SEA WATER Actinomycetes) Sharma, A.K. Kikani, B.A. and Singh S.P. 2020, Biochemical, thermodynamic and structural characteristics of a biotechnologically compatible alkaline protease from a haloalkaliphilic, Nocardiopsis dassonvillei OK-18 International Journal of Biological Macromolecules (IJBIOMAC), 153:680-696, DOI: 10.1016/j.ijbiomac.2020.03.006 (IF 5.16)
  • 41. Enzyme system ΔG* (kJ/mol) for deactivation of protease 30 °C 50 °C 60 °C 70 °C 80 °C Purified enzyme [A] 87.63 91.33 93.17 95.02 96.87 Purified enzyme [A] at varying pH A + pH 8 86.14 90.21 92.24 94.28 96.32 A + pH 9 87.63 91.33 93.17 95.02 96.87 A + pH 10 88.32 91.74 93.45 95.16 96.87 A + pH 11 88.36 91.99 93.8 95.62 97.43 Purified enzyme [A] at varying salt concentrations A + 0.5 M 88.71 92.35 94.17 95.99 97.81 A + 1 M 89.19 93.03 94.95 96.87 98.79 A + 2 M 88.42 91.29 92.73 94.17 95.6 A + 3 M 87.3 90.48 92.06 93.65 95.23 A + 4 M 87.08 89.9 91.31 92.72 94.13 Purified enzyme [A] at Na-glutamate and CaCl2 A + 30 % Na-glutamate 79.7 83.73 85.75 87.76 89.79 A + 5 mM CaCl2 92.07 95.99 97.95 99.91 101.86 A + 10 mM CaCl2 91.95 95.86 97.82 99.78 101.73 Enzyme system ΔG* (kJ/mol) for deactivation of protease 30 °C 50 °C 60 °C 70 °C Purified enzyme [A] 88.20 90.93 92.30 93.66 Purified enzyme [A] at varying pH A + pH 8 88.45 91.31 92.74 94.17 A + pH 9 87.93 91.31 92.99 94.68 A + pH 10 88.20 90.93 92.30 93.66 A + pH 11 86.85 90.43 92.22 94.01 Purified enzyme [A] at varying salt concentrations A + 0.5 M 87.65 92.0 94.18 96.3 A + 1 M 88.33 93.41 95.94 98.48 A + 2 M 88.12 92.71 95.0 97.29 A + 3 M 87.05 91.62 93.91 96.19 A + 4 M 86.06 90.25 92.35 94.44 Purified enzyme [A] at Na-glutamate and CaCl2 A + 30 % Na-glutamate 79.70 83.73 85.74 87.75 A + 5 mM CaCl2 93.89 97.79 99.73 101.6 A + 10 mM CaCl2 88.72 92.66 94.63 96.60 Determination of the ΔG* values for the thermal deactivation of the purified proteases from a)Nocardiopsis dassonvillei OK-18 & b) Nocardiopsis sp. D-5 a b
  • 42. Effect of osmolytes, inhibitors, metal ions, oxidizing and reducing agents and surfactants Gohel, S. D., & Singh, S. P. (2013). Characteristics and thermodynamics of a thermostable protease from a salt-tolerant alkaliphilic actinomycete.International journal of biological macromolecules, 56, 20-27.
  • 43. Structure & Function analysis of the enzymes
  • 44. -4 -2 0 2 4 200 210 220 230 240 0M 3M 6M Parameters Secondary structure prediction by K2D3 software α -helix structures (%) ÎČ -sheet structures (%) Incubation temperatures (°C) 50 °C 1.65 40.96 70 °C 1.89 40.68 90 °C 2.76 39.7 pH 8 1.77 40.76 10 1.89 40.68 Salt concentrations (M) 1M+ 50°C 2.13 40.47 2M+50°C 1.65 40.95 1M +70°C 1.93 40.81 1M+90°C 2.87 39.17 Urea concentrations (M) 4M 1.77 40.81 8M 1.55 41.22 Gn-HCl concentrations (M) 3M 1.41 41.59 6M 2.50 40.08 Estimation of the structural changes in the purified OK-18 protease by K2D3 software Wavelength (nm) MRE Gn-HCl Sharma, Kikani & Singh, 2020, IJBIOMAC
  • 45.
  • 46. ALKALINE PROTEASE: PRODUCTION AND CATALYSIS UNDER NON-AQUEOUS CONDITIONS
  • 47.
  • 48. Growth behavior of Mit-1 in the presence of Organic solvents Control Xylene Butanol Benzene
  • 49. Comparison of specific enzyme production with complex medium and with organic solvent as the sole source of carbon (0.1%) Medium Specific enzyme Comparative production fold (Enzyme activity/growth) Complex medium 49 1.0 (gelatin broth) MM* + Butanol 2400 48.9 MM+ Xylene 1083 22.1 MM+ Acetone 268 5.5 MM+ Benzene 73.8 1.5 MM+ Ethanol 20.21 0.412 * MM = Minimal Medium Jignasha Thumar and S P Singh 2010
  • 50. Organisms NCBI Accession number Gene cloned Host Reference Haloalkaliphilic bacterium OME12 EU680960 Alkaline protease BL21 (DE3) Purohit and Singh 2013 Proc. Biochem Metagenome from salt enriched soil --------------- Alkaline protease BL21 (DE3) Purohit and Singh 2013 IJBIOMAC Oceanobacillus ihyehensis OME18 EU680961 Alkaline protease BL21 (DE3) Purohit and Singh 2013 Proc. Biochem Alkalibacillus haloalkaliphilus C-5 -- Serine alkaline protease E.coli (DH5α) Rawal et al 2012 Haloakaliphilic bacteria Ve2-20-91 JX296114 Serine alkaline protease E.coli (DH5α) Raval et al. 2015 Ann Microbiology Haloalkaliphilic actinomycetes Serine alkaline protease BL21 (DE3) Gohel & Singh, 2012 IJBIOMAC Bacillus lehensis JO-26 ---------- Serine alkaline protease BL21 (DE3) Hitarth Bhatt and S P Singh 2019 ( Unpublished) Cloning, Expression and structure and function relationship of proteases from Haloalkaliphilic bacteria & Actinobacteria
  • 52. Dr. Bharat Joshi (Canada) Dr. Manish Bhatt ( Canada) Dr. Rajesh K. Patel ( Professor, V N University of South Gujarat, Surat) Dr. Anju Mittal ( USA) Dr. Mital Dodia (Scientist, Canada)  Dr.. Jignasha Thumar ( Asstt Professor, Gandhinagar) Dr. Rupal Joshi (ZRC, Ahmedabad) Dr. Chetna Rajyaguru (Asstt Professor, Rajkot) Ms. Geera Mankad (Associate Professor, Rajkot) Dr. Chirantan Raval ( Asst Prof., Govt College)  Dr. Megha Purohit ( Scientist and Entrepreneur, Canada) Dr. Himanshu Bhimani (Assoc Prof, Navsari Ag Univ) Dr. Bhavtosh Kikani (Asstt Prof. CHARUSAT) Dr. Vikram Raval (Asstt Prof. Gujarat University) Dr. Sangeeta Gohel (Asstt Prof. Saurashtra University) Dr. Sandeep Pandey (Scientist, Pharma, Daman) Dr. Viral Akbari ( Scientist, UK) Dr. Rushit Shukla (Asstt Prof. Christ College, Rajkot) Dr. Amit Sharma (Scientist, ZRC, Ahmedabad) Dr. Kruti Dangar (Asstt Prof. Saurashtra University) Dr. Atman Vaidya ( Biology Teacher & Entrepreneur) Mr. Hitarth Bhatt (Asstt Prof. Virani College, Rajkot) Ms. Rupal Pandya (USA) Ms. Foram Thakrar (Ahmedabad) Dr. Dalip Rathore ( GBRC, Gandhinagar) Acknowledgements : Ph.D. Students
  • 53. Research Team Dr. Sangeeta Gohel, Assistant Professor Dr. Vikram Raval, DST Young Scientist ( Now at Gujarat University Dr. Aparna Singh, DST Women Scientist ( Now Asstt. Prof, Surat Dr. Kalpana Rakholiya, SERB- National Post-Doctoral Fellow Ms. Kruti Dangar, DST Women Scientist, Now Asstt prof, Saurashtra university & Ph.D./M.Phil/M.Sc.Students
  • 55. Financial Support DBT, UGC, DST, MoES, GSBTM, Saurashtra University, Rajkot Research Collaborations ‱IIT Delhi, New Delhi: Prof. S. K.Khare ‱DUSC, New Delhi: Prof. Sanjay Kapoor ‱NFRI, Tsukuba, Japan: Dr. Kiyoshi Hayashi ( Now at Toyo University, Japan) ‱Griffith University, Australia ‱JNTU Hyderabad, Prof. Ch. Sasikala ‱Central University of Hyderabad, Prof. Ch. Rama Rao