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Visual inspection to manage bacterial wilt in
Sub-Saharan Africa:
Improving seed quality and impacting smallholder
farmers
Parker, ML, Mugo, J, Gutarra, L, Orrego, R and
Schulte-Geldermann, E.
European Association of Potato Research
Triennial Conference, Brussels July 7-11, 2014
 Bacterial Wilt (BW) major
(principal) constraint to potato
production
 BW = Ralstonia solanacearum
 Massive host range (> 200 plant
species)
 Survivor
Impact of bacterial wilt on smallholder farmers
Major cause of poor seed quality
and consequently, low yields
(8-12 t/ha)
 Spread
 seed tubers
 contaminants
 irrigation/water run-off
 NO host resistance
 NO chemical control
 Management relies on:
 clean seed
 sound crop rotation
Management
Unavailable
Quality (formal) seed difficult to access
Expensive
Informal seed system dominates in SSA
 farmer-saved seed
 unmarketable tubers
Main culprit = SEED
Prevalence
Wide spread in SSA from low to high altitudes
Region Incidence
(%)
1500 -
2200 m
> 2201 m Region Incidence
(%)
1500 -
2200 m
> 2201 m
Aberdares 0 6 5 Mau 0 1 4
1-9 1 4 complex 1-9 5 3
10-20 2 5 10-20 2 2
above 20 0 6 above 20 1 1
Elgon 0 4 6 Mt Kenya 0 6 3
1-9 2 2 1-9 2 0
10-20 3 4 10-20 3 1
above 20 1 7 above 20 4 1
BW was observed on 121 farms of a total 156 farms (78%)
Improving access to quality seed
 Certification regulations exist, practice is minimal
 In Kenya
 quantities of certified (formal) seed supply
approximately 2% of demand
 available at a few locations across the country
 Costly
 certify seed lots
 purchase
tissue culture/minitubers/first field generations
onward, localised multiplication
decentralised multipliers
Improving access to quality seed
Formal certification
Quality Declared
Planting Material
QDPM
 VISUAL INSPECTION by recognised committees
 Removing infected plants from seed multiplication
plots (negative selection)
 GAP - particularly crop rotation, alternative host
management and field hygiene
 QDPM is promoted among decentralised multipliers
 Thereby increasing geographic and economic
accessibility to quality seed
 Local trade only
QDPM: an alternative approach to assess seed
health
35.0
25.0
8.0
0
5
10
15
20
25
30
Improved
on-station
Improved
on-farm
National
Average
QDPM
Ethiopia
QDPM: an alternative approach to assess seed
health
 VISUAL INSPECTION
 Farm-saved seed
 Marking and saving tubers from
the healthiest plants in a crop
for the following season’s seed
Positive selection
BWincidence(%) 45
20
FSS PSS CS
Kakuhenzire et al., 2013
Positive selection
Another main culprit = poor rotation
 Potato key (only!) cash
and food security crop for
farmers in mid to highland
regions
 Season after season,
farmers plant potato on
same site
 Lower altitudes, farmers
crop numerous
solanaceous crops
Improving crop rotation
Region Crop
CFU / g soil
Before planting After planting
Huanucalla Potato 188 11248
Onion 836 401
Chinchinga Potato 50 426
Onion 38 17
In each region, onion reduced CFU by ~ 50%
Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3
204 364
Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent
391919.3 0 0 67 0 7 0 0 0 0 13
391930.1 0 27 47 0 20 7 0 0 0 7
392278.19 0 33 73 0 20 0 0 20 0 0
394895.7 0 0 7 0 0 0 0 0 0 7
394903.5 0 7 20 33 13 7 0 0 0 0
394904.2 0 0 27 27 13 20 0 0 0 7
394904.9 0 0 47 0 20 0 0 20 0 0
394905.8 0 0 13 33 0 7 0 0 0 7
393909.2 0 20 87 0 60 0 0 13 0 0
395438.1 0 7 33 0 13 13 0 0 0 0
11049.0 7 7 33 0 0 0 0 0 0 60
Revolución 0 27 87 13 60 0 0 60 0 27
No visible wilt and no latent infection = NO THREAT
Can latent infection threaten effectiveness of QDPM?
Can latent infection threaten effectiveness of QDPM?
Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3
204 364
Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent
391919.3 0 0 67 0 7 0 0 0 0 13
391930.1 0 27 47 0 20 7 0 0 0 7
392278.19 0 33 73 0 20 0 0 20 0 0
394895.7 0 0 7 0 0 0 0 0 0 7
394903.5 0 7 20 33 13 7 0 0 0 0
394904.2 0 0 27 27 13 20 0 0 0 7
394904.9 0 0 47 0 20 0 0 20 0 0
394905.8 0 0 13 33 0 7 0 0 0 7
393909.2 0 20 87 0 60 0 0 13 0 0
395438.1 0 7 33 0 13 13 0 0 0 0
11049.0 7 7 33 0 0 0 0 0 0 60
Revolución 0 27 87 13 60 0 0 60 0 27
Very visible wilt and no latent infection = NO THREAT
Can latent infection threaten effectiveness of QDPM?
Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3
204 364
Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent
391919.3 0 0 67 0 7 0 0 0 0 13
391930.1 0 27 47 0 20 7 0 0 0 7
392278.19 0 33 73 0 20 0 0 20 0 0
394895.7 0 0 7 0 0 0 0 0 0 7
394903.5 0 7 20 33 13 7 0 0 0 0
394904.2 0 0 27 27 13 20 0 0 0 7
394904.9 0 0 47 0 20 0 0 20 0 0
394905.8 0 0 13 33 0 7 0 0 0 7
393909.2 0 20 87 0 60 0 0 13 0 0
395438.1 0 7 33 0 13 13 0 0 0 0
11049.0 7 7 33 0 0 0 0 0 0 60
Revolución 0 27 87 13 60 0 0 60 0 27
No visible wilt and latent infection = THREAT
Can latent infection threaten effectiveness of QDPM?
Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3
204 364
Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent
391919.3 0 0 67 0 7 0 0 0 0 13
391930.1 0 27 47 0 20 7 0 0 0 7
392278.19 0 33 73 0 20 0 0 20 0 0
394895.7 0 0 7 0 0 0 0 0 0 7
394903.5 0 7 20 33 13 7 0 0 0 0
394904.2 0 0 27 27 13 20 0 0 0 7
394904.9 0 0 47 0 20 0 0 20 0 0
394905.8 0 0 13 33 0 7 0 0 0 7
393909.2 0 20 87 0 60 0 0 13 0 0
395438.1 0 7 33 0 13 13 0 0 0 0
11049.0 7 7 33 0 0 0 0 0 0 60
Revolución 0 27 87 13 60 0 0 60 0 27
Visible wilt and latent infection = THREAT
Improving effectiveness of visible inspection
 Knowledge on Rs isolates
 Simple tools for field based diagnostics
 Further validation of rotation (onion) to reduce
Rs populations in soil
 Understand infection
gradient from an infected
source
Eapr parker 11 july_creativity_bacterial wilt visual inspection seed quality

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Eapr parker 11 july_creativity_bacterial wilt visual inspection seed quality

  • 1. Visual inspection to manage bacterial wilt in Sub-Saharan Africa: Improving seed quality and impacting smallholder farmers Parker, ML, Mugo, J, Gutarra, L, Orrego, R and Schulte-Geldermann, E. European Association of Potato Research Triennial Conference, Brussels July 7-11, 2014
  • 2.  Bacterial Wilt (BW) major (principal) constraint to potato production  BW = Ralstonia solanacearum  Massive host range (> 200 plant species)  Survivor Impact of bacterial wilt on smallholder farmers Major cause of poor seed quality and consequently, low yields (8-12 t/ha)
  • 3.  Spread  seed tubers  contaminants  irrigation/water run-off  NO host resistance  NO chemical control  Management relies on:  clean seed  sound crop rotation Management
  • 4. Unavailable Quality (formal) seed difficult to access Expensive Informal seed system dominates in SSA  farmer-saved seed  unmarketable tubers Main culprit = SEED
  • 5. Prevalence Wide spread in SSA from low to high altitudes Region Incidence (%) 1500 - 2200 m > 2201 m Region Incidence (%) 1500 - 2200 m > 2201 m Aberdares 0 6 5 Mau 0 1 4 1-9 1 4 complex 1-9 5 3 10-20 2 5 10-20 2 2 above 20 0 6 above 20 1 1 Elgon 0 4 6 Mt Kenya 0 6 3 1-9 2 2 1-9 2 0 10-20 3 4 10-20 3 1 above 20 1 7 above 20 4 1 BW was observed on 121 farms of a total 156 farms (78%)
  • 6. Improving access to quality seed  Certification regulations exist, practice is minimal  In Kenya  quantities of certified (formal) seed supply approximately 2% of demand  available at a few locations across the country  Costly  certify seed lots  purchase
  • 7. tissue culture/minitubers/first field generations onward, localised multiplication decentralised multipliers Improving access to quality seed Formal certification Quality Declared Planting Material QDPM
  • 8.  VISUAL INSPECTION by recognised committees  Removing infected plants from seed multiplication plots (negative selection)  GAP - particularly crop rotation, alternative host management and field hygiene  QDPM is promoted among decentralised multipliers  Thereby increasing geographic and economic accessibility to quality seed  Local trade only QDPM: an alternative approach to assess seed health
  • 10.  VISUAL INSPECTION  Farm-saved seed  Marking and saving tubers from the healthiest plants in a crop for the following season’s seed Positive selection
  • 11. BWincidence(%) 45 20 FSS PSS CS Kakuhenzire et al., 2013 Positive selection
  • 12. Another main culprit = poor rotation  Potato key (only!) cash and food security crop for farmers in mid to highland regions  Season after season, farmers plant potato on same site  Lower altitudes, farmers crop numerous solanaceous crops
  • 13. Improving crop rotation Region Crop CFU / g soil Before planting After planting Huanucalla Potato 188 11248 Onion 836 401 Chinchinga Potato 50 426 Onion 38 17 In each region, onion reduced CFU by ~ 50%
  • 14. Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3 204 364 Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent 391919.3 0 0 67 0 7 0 0 0 0 13 391930.1 0 27 47 0 20 7 0 0 0 7 392278.19 0 33 73 0 20 0 0 20 0 0 394895.7 0 0 7 0 0 0 0 0 0 7 394903.5 0 7 20 33 13 7 0 0 0 0 394904.2 0 0 27 27 13 20 0 0 0 7 394904.9 0 0 47 0 20 0 0 20 0 0 394905.8 0 0 13 33 0 7 0 0 0 7 393909.2 0 20 87 0 60 0 0 13 0 0 395438.1 0 7 33 0 13 13 0 0 0 0 11049.0 7 7 33 0 0 0 0 0 0 60 Revolución 0 27 87 13 60 0 0 60 0 27 No visible wilt and no latent infection = NO THREAT Can latent infection threaten effectiveness of QDPM?
  • 15. Can latent infection threaten effectiveness of QDPM? Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3 204 364 Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent 391919.3 0 0 67 0 7 0 0 0 0 13 391930.1 0 27 47 0 20 7 0 0 0 7 392278.19 0 33 73 0 20 0 0 20 0 0 394895.7 0 0 7 0 0 0 0 0 0 7 394903.5 0 7 20 33 13 7 0 0 0 0 394904.2 0 0 27 27 13 20 0 0 0 7 394904.9 0 0 47 0 20 0 0 20 0 0 394905.8 0 0 13 33 0 7 0 0 0 7 393909.2 0 20 87 0 60 0 0 13 0 0 395438.1 0 7 33 0 13 13 0 0 0 0 11049.0 7 7 33 0 0 0 0 0 0 60 Revolución 0 27 87 13 60 0 0 60 0 27 Very visible wilt and no latent infection = NO THREAT
  • 16. Can latent infection threaten effectiveness of QDPM? Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3 204 364 Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent 391919.3 0 0 67 0 7 0 0 0 0 13 391930.1 0 27 47 0 20 7 0 0 0 7 392278.19 0 33 73 0 20 0 0 20 0 0 394895.7 0 0 7 0 0 0 0 0 0 7 394903.5 0 7 20 33 13 7 0 0 0 0 394904.2 0 0 27 27 13 20 0 0 0 7 394904.9 0 0 47 0 20 0 0 20 0 0 394905.8 0 0 13 33 0 7 0 0 0 7 393909.2 0 20 87 0 60 0 0 13 0 0 395438.1 0 7 33 0 13 13 0 0 0 0 11049.0 7 7 33 0 0 0 0 0 0 60 Revolución 0 27 87 13 60 0 0 60 0 27 No visible wilt and latent infection = THREAT
  • 17. Can latent infection threaten effectiveness of QDPM? Genotype Biovar1 Biovar 2A Biovar 2T Biovar 3 204 364 Wilt Latent Wilt Latent Wilt Latent Wilt Latent Wilt Latent 391919.3 0 0 67 0 7 0 0 0 0 13 391930.1 0 27 47 0 20 7 0 0 0 7 392278.19 0 33 73 0 20 0 0 20 0 0 394895.7 0 0 7 0 0 0 0 0 0 7 394903.5 0 7 20 33 13 7 0 0 0 0 394904.2 0 0 27 27 13 20 0 0 0 7 394904.9 0 0 47 0 20 0 0 20 0 0 394905.8 0 0 13 33 0 7 0 0 0 7 393909.2 0 20 87 0 60 0 0 13 0 0 395438.1 0 7 33 0 13 13 0 0 0 0 11049.0 7 7 33 0 0 0 0 0 0 60 Revolución 0 27 87 13 60 0 0 60 0 27 Visible wilt and latent infection = THREAT
  • 18. Improving effectiveness of visible inspection  Knowledge on Rs isolates  Simple tools for field based diagnostics  Further validation of rotation (onion) to reduce Rs populations in soil  Understand infection gradient from an infected source