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Comparative transcriptional analysis of
Bacillus subtilis cells overproducing
either secreted proteins, lipoproteins or
membrane proteins
Cell Factory
• Cells capable of secreting valuable proteins
• GRAS (Generally Recognized as Safe)
microorganism
• Escherichia coli
• Lactobacillus spp.
Problem
• Which of the 8 secretory proteins of B. subtilis
NZ8900 is/are found in large amounts in the
growth medium?
Methodology
1. 8 genes cloned using SURE system
overexpression vector pNZ8902 or pNZ8901
2. Genes were fused to C-terminal 6His-tag
encoding sequences for imunnodetection
3. Bacterial cultures grown to midexponential
phase and gene expression was induced with
subtilin
4. Testing protein production (whole cell extract;
extracellular; membrane; cytoplasmic) and
Microarray analyses
Result and Discussion
SDS-Page Immunodetection
Result and Discussion
SDS-Page Immunodetection
Conclusion
• Data reveal possible bottlenecks in the
protein overproduction process
• Recombinations in the genes controlling the
expression of XynA and NprE would produce
valuable proteins in high amounts fit for
industrial production
Microarray Analyses
• measure the expression levels of large
numbers of genes simultaneously or
to genotype multiple regions of a genome
General Effects of Overproduction
• Downregulation of the sdpABC (sporulating delay
protein) operon
– Role in apoptosis
– Kills non-sporulating siblings and feeding on the dead
cells under conditions of nutrient limitation
• Upregulation of class I heat-shock genes coding
for molecular chaperon groES and groEL
– Protects the cell from toxic accumulation of mis- or
unfolded protein

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120 journal reporting

  • 1. Comparative transcriptional analysis of Bacillus subtilis cells overproducing either secreted proteins, lipoproteins or membrane proteins
  • 2. Cell Factory • Cells capable of secreting valuable proteins • GRAS (Generally Recognized as Safe) microorganism • Escherichia coli • Lactobacillus spp.
  • 3. Problem • Which of the 8 secretory proteins of B. subtilis NZ8900 is/are found in large amounts in the growth medium?
  • 4. Methodology 1. 8 genes cloned using SURE system overexpression vector pNZ8902 or pNZ8901 2. Genes were fused to C-terminal 6His-tag encoding sequences for imunnodetection 3. Bacterial cultures grown to midexponential phase and gene expression was induced with subtilin 4. Testing protein production (whole cell extract; extracellular; membrane; cytoplasmic) and Microarray analyses
  • 7. Conclusion • Data reveal possible bottlenecks in the protein overproduction process • Recombinations in the genes controlling the expression of XynA and NprE would produce valuable proteins in high amounts fit for industrial production
  • 8. Microarray Analyses • measure the expression levels of large numbers of genes simultaneously or to genotype multiple regions of a genome
  • 9. General Effects of Overproduction • Downregulation of the sdpABC (sporulating delay protein) operon – Role in apoptosis – Kills non-sporulating siblings and feeding on the dead cells under conditions of nutrient limitation • Upregulation of class I heat-shock genes coding for molecular chaperon groES and groEL – Protects the cell from toxic accumulation of mis- or unfolded protein

Editor's Notes

  1. TY medium
  2. Medium
  3. Membrane