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PROTEOMICS
Rapid Measurement of Lung
Cancer Biomarkers
Ambermarie Dawdy
August 01, 2016
Jin H. Park, Biochem J., 2012,448(Pt 3): 417-423
Why Should we Study Lung Cancer?
Rebecca L. Siegel, CA CANCER J CLIN 2016,66, 11-18
Estimated New Cases
Prostate 21%
Lung & Bronchus 14%
Colon & Rectum 8%
Urinary Bladder 7%
Melanoma 6%
Lymphoma 5%
Kidney & Renal 5%
Oral & Pharynx 4%
Leukemia 4%
Liver & Bile Duct 3%
Lung & Bronchus 27%
Prostate 8%
Colon & Rectum 8%
Pancreas 7%
Liver & Bile Duct 3%
Leukemia 4%
Esophagus 4%
Urinary Bladder 4%
Lymphoma 4%
Brain & Nervous 3%
Breast
Lung & Bronchus
Colon & Rectum
Uterine corpus
Thyroid
Lymphoma
Melanoma
Leukemia
Pancreas
Kidney & Renal
Lung & Bronchus
Breast
Colon & Rectum
Pancreas
Ovary
Uterine corpus
Leukemia
Liver & Bile Duct
Lymphoma
Brain & Nervous
Estimated Deaths
29%
13%
8%
7%
6%
4%
3%
3%
3%
3%
26%
14%
8%
7%
5%
4%
4%
3%
3%
2%
*17,369 Cases of estimated new cases in Florida and 11,960 estimated deaths from lung cancer
What are Biomarkers?
• Measurable substances in
organisms whose presence is
indicative of a biological
occurrence such as
disease/infection
• Tissue microarray is used to
remove sections of tumor
tissue and clinical biopsies
• Reduces the time it takes to
process tissue microarrays
from 3 hours a sample to 12
minutes a sample
Mascaux C, Clin Cancer Res, 2011,17, 7801
Methods
Cellularity Biomarker: Lamin-A/C
Library A549 H1648 H1650 H1975 H322 HCC2279 HCC827
Lamin Protein Structure
SGAQASSTPLSPTR
Quigley A, Science ,2013,339:1604-1607
Cellularity Biomarker: Epidermal Growth Factor Receptor
Library A549 H1648 H1650 H1975 H322 HCC2279 HCC827
.LTQLGTFEDHFLSLQR
EGFR STRUCTUREErlotinib Structure
SUMMARY
● Lung Cancer has Poor Patient Outcomes
● Improved assessment of biomarkers can help
the patient
● Goal: Develop and implement new methods for
biomarker detection
Acknowledgments
Funding: Frank E. Duckwall Foundation, Saunders Foundation, Moffitt
Cancer Center
Koomen Lab
John Koomen, PhD
Melissa Martinez
Omar Chavez-Chiang, MD
Proteomics Core
Bin Fang, PhD
Lancia Darville, PhD
Victoria Izumi
Kiah Bowers
SPARK
Doug Cress, PhD
Evelyn Rivera-Miranda
Moffitt Cancer Center
Moffitt Foundation

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Rapid Measurement of Lung Cancer Biomarkers

  • 1. PROTEOMICS Rapid Measurement of Lung Cancer Biomarkers Ambermarie Dawdy August 01, 2016 Jin H. Park, Biochem J., 2012,448(Pt 3): 417-423
  • 2. Why Should we Study Lung Cancer? Rebecca L. Siegel, CA CANCER J CLIN 2016,66, 11-18 Estimated New Cases Prostate 21% Lung & Bronchus 14% Colon & Rectum 8% Urinary Bladder 7% Melanoma 6% Lymphoma 5% Kidney & Renal 5% Oral & Pharynx 4% Leukemia 4% Liver & Bile Duct 3% Lung & Bronchus 27% Prostate 8% Colon & Rectum 8% Pancreas 7% Liver & Bile Duct 3% Leukemia 4% Esophagus 4% Urinary Bladder 4% Lymphoma 4% Brain & Nervous 3% Breast Lung & Bronchus Colon & Rectum Uterine corpus Thyroid Lymphoma Melanoma Leukemia Pancreas Kidney & Renal Lung & Bronchus Breast Colon & Rectum Pancreas Ovary Uterine corpus Leukemia Liver & Bile Duct Lymphoma Brain & Nervous Estimated Deaths 29% 13% 8% 7% 6% 4% 3% 3% 3% 3% 26% 14% 8% 7% 5% 4% 4% 3% 3% 2% *17,369 Cases of estimated new cases in Florida and 11,960 estimated deaths from lung cancer
  • 3. What are Biomarkers? • Measurable substances in organisms whose presence is indicative of a biological occurrence such as disease/infection • Tissue microarray is used to remove sections of tumor tissue and clinical biopsies • Reduces the time it takes to process tissue microarrays from 3 hours a sample to 12 minutes a sample Mascaux C, Clin Cancer Res, 2011,17, 7801
  • 5. Cellularity Biomarker: Lamin-A/C Library A549 H1648 H1650 H1975 H322 HCC2279 HCC827 Lamin Protein Structure SGAQASSTPLSPTR Quigley A, Science ,2013,339:1604-1607
  • 6. Cellularity Biomarker: Epidermal Growth Factor Receptor Library A549 H1648 H1650 H1975 H322 HCC2279 HCC827 .LTQLGTFEDHFLSLQR EGFR STRUCTUREErlotinib Structure
  • 7. SUMMARY ● Lung Cancer has Poor Patient Outcomes ● Improved assessment of biomarkers can help the patient ● Goal: Develop and implement new methods for biomarker detection
  • 8. Acknowledgments Funding: Frank E. Duckwall Foundation, Saunders Foundation, Moffitt Cancer Center Koomen Lab John Koomen, PhD Melissa Martinez Omar Chavez-Chiang, MD Proteomics Core Bin Fang, PhD Lancia Darville, PhD Victoria Izumi Kiah Bowers SPARK Doug Cress, PhD Evelyn Rivera-Miranda Moffitt Cancer Center Moffitt Foundation