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NeXO Web Poster for ISMB 2014 BioVis SIG
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NeXO Web Poster for ISMB 2014 BioVis SIG

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An overview of NeXO Web, and web application for integrated ontology visualization.

An overview of NeXO Web, and web application for integrated ontology visualization.

Published in Science
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  • 1. Keiichiro Ono (kono@ucsd.edu) University of California, San Diego Department of Medicine What is NeXO Web? NeXO WebAn Integrated Ontology Visualization Application for Modern Web Platforms Technologies Gene Ontology Visualizations Search & Term Enrichment Analysis Window Ontology Tree (DAG) View Raw Interaction View Term Details A gene ontology inferred from molecular networks. Janusz Dutkowski, Michael Kramer, Michal A Surma, Rama Balakrishnan, J Michael Cherry, Nevan J Krogan & Trey Ideker. Nature Biotechnology 31, 38–45 (2013). NeXO (Network eXtracted Ontology) is a data-driven gene ontology inferred directly from ‘omics data. The NeXO Web application is designed to visualize the NeXO data sets and existing ontologies, such as GO, utilizing modern web technologies. - Provides a new way to visualize ontology data sets with modern web technologies - Integrate multi-omics data into a HTML5-based Single Page Application (SPA) - Open for future expansion Theoritical Background NeXO Web: the NeXO ontology database and visualization platform. Dut- kowski J, Ono K, Kramer M, Yu M, Pratt D, Demchak B, Ideker T. Nucleic Acids Res. 2014 Jan;42 (Database issue) Thechnical Background nexontology.org sigma.js Client-Side Server-Side Cytoscape.js