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Violeta Ilik
Northwestern University Feinberg School of Medicine
Galter Health Sciences Library
Beyond the manuscript: Using IRs
for alternative non-traditional content
types
Feinberg School of Medicine
2
We want to optimize discoverability and dissemination of content and enhance the impact of FSM, NUCATS,
and our Northwestern Medicine community.
Feinberg School of Medicine
3
Northwestern University Clinical and
Translational Sciences (NUCATS) Institute
http://nucats.northwestern.edu/
Mission: Speeding transformative
research discoveries to patients
and the community
Environment
Team Science
Training
Idea development
Research process
Communication
Assessment & Improvement
Accelerating discovery & implementation
Adapted from: http://www.academicdepartments.musc.edu_sebin_b_o_Translational_Science.jpg
Translation
to Humans
Translation
to Patients
Translation
to Practice
Translation to
Population
Health
BASIC SCIENTIFIC
DISCOVERY
CLINICAL
INSIGHTS
IMPLICATIONS
FOR PRACTICE
IMPLICATIONS
FOR POPULATION
HEALTH
IMPROVED
GLOBAL HEALTH
T2T1 T3 T4
Building an ecosystem
Systems play a huge role in our approach
Collaborators: NUCATS, NU, Feinberg School of Medicine leadership, departments,
centers, institutes, vendors, community partners, communications, Research office, FASIS,
Symplectic Elements
DigitalHub repository
VIVO/Data Index
FSM Profiles
Publications & Grants
Alternative Outputs
Contribution/
Attribution
Systems play a huge role
Accommodation of diverse and complex data types
Support needs of different applications, systems, & users
Interoperability with broader data landscape
DigitalHub, born on October 19, 2015 is
built on Sufia
Fedora 4.5
Sufia 6.6.0
•  Sufia extends Hydra to provide a user interface
around common repository and social features.
•  Sufia offers self-deposit and proxy deposit workflows.
•  Hydra: a community, a set of design principles,
and (Ruby) software for building applications with
repository storage and a search index.
Resource types in DigitalHub
•  Research papers
•  Case reports, technical reports
•  Supplemental images
•  Datasets
•  Open access books
•  Conference papers
•  White papers
•  Presentations and lectures
•  Educational materials
•  Posters
•  Video and audio materials
•  … and much more!
What about copyright over archived
content?
Copyright owners retain copyright over their
materials. By putting material into DigitalHub,
users are granting Galter Library a non-exclusive
license to distribute it, which means that they are
authorizing Galter Library to make it available but
can also distribute it through other mechanisms.
Creative Commons License
Visit: http://creativecommons.org/examples#by
The MIT License (MIT)
•  Permission is hereby granted, free of charge, to any person obtaining
a copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, sublicense, and/or sell copies of the Software, and to
permit persons to whom the Software is furnished to do so, subject to
the following conditions:
-  The above copyright notice and this permission notice shall be
included in all copies or substantial portions of the Software.
Added the MIT License
•  RightsStatements.org are developed for the specific needs of
cultural heritage institutions and online heritage aggregation
platforms.
•  There are 12 different rights statements that can be used by
cultural heritage institutions to communicate the copyright and
re-use status of digital objects to the public.
•  They are not intended to be used by individuals to license their
own creations.
•  They are to be used by libraries and other cultural heritage
institutions to clearly communicate the copyright/re-use status
of a specific item.
RightsStatements.org – under consideration
Submitting works in 7 easy steps
1.  Login to your account on DigitalHub
2.  Select the “Upload” button
3.  Agree to the deposit agreement
4.  Select a file you want to deposit and upload it.
5.  Apply metadata (5 required fields)
6.  Set permissions and visibility
7.  Save your work in DigitalHub!
User guide:
https://goo.gl/642uyx
Demo video:
https://goo.gl/9g89v1
5 required fields
1.  Title
2.  Resource type – controlled field
3.  Keyword
4.  Creator – controlled field
5.  Rights – controlled field
Additional metadata for describing
your work
-  Use of university
databases – campus
directory (LDAP)
-  Use of established
standards (date - ISO
8601, language – ISO
639-2)
-  Use of established
controlled vocabularies
(LCSH, MeSH,
GeoNames)
Controlled
vocabularies
Persistent unique identifiers - Digital Object
Identifiers (DOIs) and Archival Resource
Keys (ARKs)
-  For all of the scholarly works deposited into DigitalHub.
-  Persistent identifiers like DOIs and ARKs can help:
-  Meet funders’ sharing requirements
-  Promote scientific re-use of your work
-  Track re-use and discussion of your work
-  Ensure transparency and accountability
You get a DOI, you get a DOI, everyone
gets a DOI … except the works that already
have one
DigitalHub & datasets
•  DigitalHub supports a variety of file and compression formats to meet
your needs.
•  The current file size limit is 2 GB and supported compression file
extensions include:
-  zip - application/zip
-  7z - application/x-7z-compressed
-  bz2 - application/x-bzip2
-  tar - application/x-tar and application/x-gtar
-  gz - application/gzip and application/x-gzip
The DigitalHub repository at Galter Health Sciences Library
accepts deposit of datasets associated with publications to help
investigators comply with journal data sharing policies
DigitalHub & datasets
The DigitalHub repository at Galter Health Sciences Library
accepts deposit of datasets associated with publications to help
investigators comply with journal data sharing policies
DigitalHub & software packages
The DigitalHub repository at Galter Health Sciences Library
accepts user guides for software packages such as StatTag –
MIT License applied to the user guide and to the software
package
DigitalHub & guidelines
Women’s Health Research Institute guideline for Statistical
considerations in basic science sex inclusive research
DigitalHub & videos
Center for Prevention Implementation Methodology
Prevention Science Methodology Group
DigitalHub & lecture series
Free introductory lectures on biostatistics in medical research by
the Biostatistics Collaboration Center
Image collections
Image collections
multi-page collections created with an IIIF viewer
How do we get our message
across:
• Presentations at department meetings
(all professional staff is expected to be fluent in the
various aspects of scholarly communications)
• Consultations (one on one or group)
• Events (Open Access week)
• Email: DigitalHub@northwestern.edu
• and …
Marketing the library
is a team sport
Communication Vehicles
Websites
Galter
NUCATS
Projects &
Grants
Emails
FSM Bulk
Mail
NUCATS
Minutes
Newsletters
NUCATS
Office of
Research
Office of
Medical
Education
Social
Media
Galter
Facebook
Galter
Twitter
Partner
social media
Signage
Digital
monitors
Partner
monitors
Posters
Presentations
NUCATS
Road Show
NUCATS
Studios
Lectures
Meetings
“write and reuse” whenever possible
Office of Research
Galter Library Connections in
Breakthroughs newsletter
Galter Connection - Breakthroughs
October ‘16
Investigators Find Success with the
DigitalHub
Sept ‘16 Understanding Citation-Related Metrics
August ‘16 Keeping Track of Your Work
June ‘16
NIH Biosketch: Contributions and
Capabilities
May ‘16
Dissemination of Research in the Wild World
Wide Web
April ‘16 Galter Library Connection: Liaison Librarians
March ‘16
FAQs About NIH Public Access Compliance
and PMCIDs
Dec ‘16
A New Metric from the NIH Office of Portfolio
Analysis
Nov ‘15
Informatics Support and Software at Galter
Health Sciences Library
October ‘15
Galter Health Sciences Library Launches
Digital Repository for Scholarly Outputs
Sept ‘15 Choosing a Journal and Making a Match
August ‘15
Writing About Your Impact in the New NIH
Biosketch
How do we know that it is working?
Track metrics across different vehicles
Analytics for emails and newsletters from
various sources are available.
Some specific “webometrics” tracked include:
the open rate and click thru rate for each
mailing, the number of clicks on each article
that is in the email/newsletter, geography/
domain of access, downloads.
How do we know that it is working?
Track metrics across different vehicles
Date Topic Center Open Rate
7-Sep-16
responsible conduct of
research
cecd 41.53%
19-Oct-16 gcp course admin 40.66%
5-Oct-16 bcc lecture series bcc 39.19%
8-Jun-16 i2b2 cdsi 39.00%
31-Aug-16 pcori funding cch 38.48%
14-Sep-16 practice based research cch 38.07%
27-Jul-16 Budget workshops ccr 37.60%
12-Oct-16 venture capital workshop invo 37.36%
10-Aug-16
digital hub accepts
datasets
galter 36.97%
3-Aug-16
ARCC dissemination
resources
cch 36.69%
17-Aug-16 id community partners cch 36.56%
28-Sep-16 onboarding admin 36.05%
24-Aug-16 research impact galter 35.53%
21-Sep-16 msrc program cecd 34.80%
13-Jul-16 cancer studies src admin 33.50%
20-Jul-16 CCH consultations cch 33.30%
2-Mar-16 tl1 cecd 31.20%
6-Apr-16 ramp challenge cdsi 30.60%
13-Apr-16 n.xt fund invo 30.60%
24-Feb-16 CCH Workshop cch 29.50%
DigitalHub Accepts Datasets
The DigitalHub repository now supports deposit of
datasets associated with publications to help
investigators comply with journal data sharing policies.
DigitalHub supports a variety of compression formats
and rights statements to meet your needs. Learn more
at digitalhub.northwestern.edu/news or contact
DigitalHub support directly
at DigitalHub@northwestern.edu.
NUCATS “Minutes” emails…
Statistics
•  6013 works
5935 OA
•  537 active users
•  Top File Formats
pdf (Portable Document Format) (7864)
tiff (Tagged Image File Format) (1759)
pdf (PDF/A) (125)
jpeg (JPEG File Interchange Format) (108)
After one year in production:
Thank	you	
Acknowledgments:	
Digital	Ini4a4ves	Working	Group,	NUCATS,		and	FSM	Office	of	Communica4on	
Thank	you	
Violeta	Ilik	
	
violeta.ilik@northwestern.edu	
h5ps://digitalhub.northwestern.edu/

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Ilik - Beyond the Manuscript: Using IRs for Non Traditional Content Types

  • 1. Violeta Ilik Northwestern University Feinberg School of Medicine Galter Health Sciences Library Beyond the manuscript: Using IRs for alternative non-traditional content types
  • 2. Feinberg School of Medicine 2 We want to optimize discoverability and dissemination of content and enhance the impact of FSM, NUCATS, and our Northwestern Medicine community.
  • 3. Feinberg School of Medicine 3
  • 4. Northwestern University Clinical and Translational Sciences (NUCATS) Institute http://nucats.northwestern.edu/ Mission: Speeding transformative research discoveries to patients and the community
  • 5. Environment Team Science Training Idea development Research process Communication Assessment & Improvement Accelerating discovery & implementation Adapted from: http://www.academicdepartments.musc.edu_sebin_b_o_Translational_Science.jpg Translation to Humans Translation to Patients Translation to Practice Translation to Population Health BASIC SCIENTIFIC DISCOVERY CLINICAL INSIGHTS IMPLICATIONS FOR PRACTICE IMPLICATIONS FOR POPULATION HEALTH IMPROVED GLOBAL HEALTH T2T1 T3 T4
  • 6. Building an ecosystem Systems play a huge role in our approach Collaborators: NUCATS, NU, Feinberg School of Medicine leadership, departments, centers, institutes, vendors, community partners, communications, Research office, FASIS, Symplectic Elements DigitalHub repository VIVO/Data Index FSM Profiles Publications & Grants Alternative Outputs Contribution/ Attribution
  • 7. Systems play a huge role Accommodation of diverse and complex data types Support needs of different applications, systems, & users Interoperability with broader data landscape
  • 8. DigitalHub, born on October 19, 2015 is built on Sufia Fedora 4.5 Sufia 6.6.0 •  Sufia extends Hydra to provide a user interface around common repository and social features. •  Sufia offers self-deposit and proxy deposit workflows. •  Hydra: a community, a set of design principles, and (Ruby) software for building applications with repository storage and a search index.
  • 9. Resource types in DigitalHub •  Research papers •  Case reports, technical reports •  Supplemental images •  Datasets •  Open access books •  Conference papers •  White papers •  Presentations and lectures •  Educational materials •  Posters •  Video and audio materials •  … and much more!
  • 10. What about copyright over archived content? Copyright owners retain copyright over their materials. By putting material into DigitalHub, users are granting Galter Library a non-exclusive license to distribute it, which means that they are authorizing Galter Library to make it available but can also distribute it through other mechanisms.
  • 11. Creative Commons License Visit: http://creativecommons.org/examples#by
  • 12. The MIT License (MIT) •  Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: -  The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. Added the MIT License
  • 13. •  RightsStatements.org are developed for the specific needs of cultural heritage institutions and online heritage aggregation platforms. •  There are 12 different rights statements that can be used by cultural heritage institutions to communicate the copyright and re-use status of digital objects to the public. •  They are not intended to be used by individuals to license their own creations. •  They are to be used by libraries and other cultural heritage institutions to clearly communicate the copyright/re-use status of a specific item. RightsStatements.org – under consideration
  • 14. Submitting works in 7 easy steps 1.  Login to your account on DigitalHub 2.  Select the “Upload” button 3.  Agree to the deposit agreement 4.  Select a file you want to deposit and upload it. 5.  Apply metadata (5 required fields) 6.  Set permissions and visibility 7.  Save your work in DigitalHub! User guide: https://goo.gl/642uyx Demo video: https://goo.gl/9g89v1
  • 15. 5 required fields 1.  Title 2.  Resource type – controlled field 3.  Keyword 4.  Creator – controlled field 5.  Rights – controlled field
  • 16. Additional metadata for describing your work -  Use of university databases – campus directory (LDAP) -  Use of established standards (date - ISO 8601, language – ISO 639-2) -  Use of established controlled vocabularies (LCSH, MeSH, GeoNames) Controlled vocabularies
  • 17. Persistent unique identifiers - Digital Object Identifiers (DOIs) and Archival Resource Keys (ARKs) -  For all of the scholarly works deposited into DigitalHub. -  Persistent identifiers like DOIs and ARKs can help: -  Meet funders’ sharing requirements -  Promote scientific re-use of your work -  Track re-use and discussion of your work -  Ensure transparency and accountability
  • 18. You get a DOI, you get a DOI, everyone gets a DOI … except the works that already have one
  • 19. DigitalHub & datasets •  DigitalHub supports a variety of file and compression formats to meet your needs. •  The current file size limit is 2 GB and supported compression file extensions include: -  zip - application/zip -  7z - application/x-7z-compressed -  bz2 - application/x-bzip2 -  tar - application/x-tar and application/x-gtar -  gz - application/gzip and application/x-gzip The DigitalHub repository at Galter Health Sciences Library accepts deposit of datasets associated with publications to help investigators comply with journal data sharing policies
  • 20. DigitalHub & datasets The DigitalHub repository at Galter Health Sciences Library accepts deposit of datasets associated with publications to help investigators comply with journal data sharing policies
  • 21. DigitalHub & software packages The DigitalHub repository at Galter Health Sciences Library accepts user guides for software packages such as StatTag – MIT License applied to the user guide and to the software package
  • 22. DigitalHub & guidelines Women’s Health Research Institute guideline for Statistical considerations in basic science sex inclusive research
  • 23. DigitalHub & videos Center for Prevention Implementation Methodology Prevention Science Methodology Group
  • 24. DigitalHub & lecture series Free introductory lectures on biostatistics in medical research by the Biostatistics Collaboration Center
  • 26. Image collections multi-page collections created with an IIIF viewer
  • 27. How do we get our message across: • Presentations at department meetings (all professional staff is expected to be fluent in the various aspects of scholarly communications) • Consultations (one on one or group) • Events (Open Access week) • Email: DigitalHub@northwestern.edu • and …
  • 28. Marketing the library is a team sport
  • 29. Communication Vehicles Websites Galter NUCATS Projects & Grants Emails FSM Bulk Mail NUCATS Minutes Newsletters NUCATS Office of Research Office of Medical Education Social Media Galter Facebook Galter Twitter Partner social media Signage Digital monitors Partner monitors Posters Presentations NUCATS Road Show NUCATS Studios Lectures Meetings “write and reuse” whenever possible
  • 30. Office of Research Galter Library Connections in Breakthroughs newsletter Galter Connection - Breakthroughs October ‘16 Investigators Find Success with the DigitalHub Sept ‘16 Understanding Citation-Related Metrics August ‘16 Keeping Track of Your Work June ‘16 NIH Biosketch: Contributions and Capabilities May ‘16 Dissemination of Research in the Wild World Wide Web April ‘16 Galter Library Connection: Liaison Librarians March ‘16 FAQs About NIH Public Access Compliance and PMCIDs Dec ‘16 A New Metric from the NIH Office of Portfolio Analysis Nov ‘15 Informatics Support and Software at Galter Health Sciences Library October ‘15 Galter Health Sciences Library Launches Digital Repository for Scholarly Outputs Sept ‘15 Choosing a Journal and Making a Match August ‘15 Writing About Your Impact in the New NIH Biosketch
  • 31. How do we know that it is working? Track metrics across different vehicles Analytics for emails and newsletters from various sources are available. Some specific “webometrics” tracked include: the open rate and click thru rate for each mailing, the number of clicks on each article that is in the email/newsletter, geography/ domain of access, downloads.
  • 32. How do we know that it is working? Track metrics across different vehicles Date Topic Center Open Rate 7-Sep-16 responsible conduct of research cecd 41.53% 19-Oct-16 gcp course admin 40.66% 5-Oct-16 bcc lecture series bcc 39.19% 8-Jun-16 i2b2 cdsi 39.00% 31-Aug-16 pcori funding cch 38.48% 14-Sep-16 practice based research cch 38.07% 27-Jul-16 Budget workshops ccr 37.60% 12-Oct-16 venture capital workshop invo 37.36% 10-Aug-16 digital hub accepts datasets galter 36.97% 3-Aug-16 ARCC dissemination resources cch 36.69% 17-Aug-16 id community partners cch 36.56% 28-Sep-16 onboarding admin 36.05% 24-Aug-16 research impact galter 35.53% 21-Sep-16 msrc program cecd 34.80% 13-Jul-16 cancer studies src admin 33.50% 20-Jul-16 CCH consultations cch 33.30% 2-Mar-16 tl1 cecd 31.20% 6-Apr-16 ramp challenge cdsi 30.60% 13-Apr-16 n.xt fund invo 30.60% 24-Feb-16 CCH Workshop cch 29.50% DigitalHub Accepts Datasets The DigitalHub repository now supports deposit of datasets associated with publications to help investigators comply with journal data sharing policies. DigitalHub supports a variety of compression formats and rights statements to meet your needs. Learn more at digitalhub.northwestern.edu/news or contact DigitalHub support directly at DigitalHub@northwestern.edu. NUCATS “Minutes” emails…
  • 33. Statistics •  6013 works 5935 OA •  537 active users •  Top File Formats pdf (Portable Document Format) (7864) tiff (Tagged Image File Format) (1759) pdf (PDF/A) (125) jpeg (JPEG File Interchange Format) (108) After one year in production: