This study prospectively validated the quick Sequential Organ Failure Assessment (qSOFA) score against the Systemic Inflammatory Response Syndrome (SIRS) criteria for predicting in-hospital mortality in patients with suspected infection visiting 39 emergency departments in Japan. The qSOFA score (area under the receiver operating characteristic curve difference of +0.13, 95% confidence interval [+0.07, +0.18]) and net reclassification improvement (+0.39, 95% confidence interval [+0.15, +0.57]) more accurately predicted mortality than SIRS criteria. However, the qSOFA score alone was insufficient to predict sepsis mortality.