How would I change the code in order to save the answer to another file? I need this to work in the
python terminal. That way I can continue to use this file. I want the file to be called star.fasta. This
fasta file needs to become the input for a kallisto command. The problem is that when their is an
output file I have a hard time getting it to work.
Code:
from Bio import SeqIO
from Bio import Entrez
Entrez.email = "Your.Name.Here@example.org" # Replace with your email
handle = Entrez.efetch(db="nucleotide", id="NC_006273.2", rettype="gb", retmode="text")
record = SeqIO.read(handle, "genbank")
for feature in record.features:
if feature.type == "CDS":
protein_id = feature.qualifiers.get("protein_id", [""])[0]
sequence = feature.qualifiers.get("translation", [""])[0]
if protein_id and sequence:
print(">{}n{}".format(protein_id, sequence))
Please answer as quickly as possible..
How would I change the code in order to save the answer to a.pdf
1. How would I change the code in order to save the answer to another file? I need this to work in the
python terminal. That way I can continue to use this file. I want the file to be called star.fasta. This
fasta file needs to become the input for a kallisto command. The problem is that when their is an
output file I have a hard time getting it to work.
Code:
from Bio import SeqIO
from Bio import Entrez
Entrez.email = "Your.Name.Here@example.org" # Replace with your email
handle = Entrez.efetch(db="nucleotide", id="NC_006273.2", rettype="gb", retmode="text")
record = SeqIO.read(handle, "genbank")
for feature in record.features:
if feature.type == "CDS":
protein_id = feature.qualifiers.get("protein_id", [""])[0]
sequence = feature.qualifiers.get("translation", [""])[0]
if protein_id and sequence:
print(">{}n{}".format(protein_id, sequence))
Please answer as quickly as possible.
![How would I change the code in order to save the answer to another file? I need this to work in the
python terminal. That way I can continue to use this file. I want the file to be called star.fasta. This
fasta file needs to become the input for a kallisto command. The problem is that when their is an
output file I have a hard time getting it to work.
Code:
from Bio import SeqIO
from Bio import Entrez
Entrez.email = "Your.Name.Here@example.org" # Replace with your email
handle = Entrez.efetch(db="nucleotide", id="NC_006273.2", rettype="gb", retmode="text")
record = SeqIO.read(handle, "genbank")
for feature in record.features:
if feature.type == "CDS":
protein_id = feature.qualifiers.get("protein_id", [""])[0]
sequence = feature.qualifiers.get("translation", [""])[0]
if protein_id and sequence:
print(">{}n{}".format(protein_id, sequence))
Please answer as quickly as possible.](https://image.slidesharecdn.com/howwouldichangethecodeinordertosavetheanswertoa-230321080526-083f5c69/85/How-would-I-change-the-code-in-order-to-save-the-answer-to-a-pdf-1-320.jpg)
