3. WhatCheck (Protein Model
Evaluation Tool) is an
efficient tool built upon
C++ programming which
evaluate the predicted
models of proteins by
checking stereochemical
parameters of amino acid
residues.
Introduction
4. “WhatCheck is derived from a subset of protein
verification tools from the WHATIF program,
this does extensive checking of many
stereochemical parameters of the residues in
the model.”
5. Objectives
Available on
WhatCheck is a web
based tool that can
accessed through any
web browser.
Research
Outcome
Provides extensive checking
of many stereochemical
parameters of the residues
in the model.
Analyzes
Analyzes the predicted
models of proteins by
checking stereochemical
parameters of amino acid
residues.
6. Input
The server requires
to upload the file
containing the
target protein
structure in PDB
format.
The server results in
plots providing
description of
amino acids of
protein structure.
Output
Input & Output
7. Residues
Error
Description of the
errors present in the
subset of amino acid
residues
Predicted
models
Better predicted
models shows more
green coloured
residues.
Residues
Provides the different
sets of amino acids with
different colors
Residues
Quality
Quality of these
residues sets is based
on their colors.
Quality
Qualities of protein
models based on their
stereochemical
properties
Research
Outcome
Evaluation
Protein model
evaluation of predicted
protein models.
8. This is how WhatCheck
provides results for
protein model either
predicted or
experimentally
determined. It
generate different
residues sets. The
quality of these
residues sets is
associated with their
colors.
9. 1st Colors Implication
2nd Green Highly Reliable Validated
3rd Yellow Not much Reliable/Mildly Issued
4th Red Not Validated
Results Analysis
Table shows the description of amino acid residues with different
colors:
10. WhatCheck (Protein
Model Evaluation Tool) is
efficiently visualize and
manipulate the predicted
protein by evaluating sets
amino acid residues
within the query protein
structure.
Conclusion
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