The document summarizes information about COVID-19, including its genotype and lifecycle. COVID-19 belongs to betacoronaviruses and causes severe acute respiratory syndrome. It has a large positive-sense RNA genome that encodes non-structural and structural proteins. The virus lifecycle involves binding to host cell receptors, releasing its RNA, replicating inside the cell, producing structural proteins, assembling a nucleoprotein complex in the endoplasmic reticulum, and being released from cells via Golgi vesicles. While similar to SARS-CoV and MERS-CoV, COVID-19 has differences in its genome and proteins. Potential treatments target viral replication or use monoclonal antibodies, but there is no certain cure currently.
The aim of this bulletin is to delineate the essential information about medicine and human disease. In the first volume of this bulletin, we have discussed aware that India is facing an extraordinary challenge to protect its citizens from the rapidly spreading COVID-19 pandemic all around the globe. It is a time of demand to do efforts against this pandemic, demands the contribution of youth to act against the spread of COVID-19 across India. The technical education community in the country is well-capable of serving the humanity by utilizing the knowledge and resources.
We have a great responsibility of not only making the people aware of precautionary measures but also to provide a solution or helping hand to strengthen the Government, peoples and School Children in combating the COVID-19.
I hope this manageable Bulletin would serve to provide unique information for COVID 19 prevention, progression and control. My sincere thanks are due to my colleagues for their valuable comments and suggestions.
Dr. A. K. Gupta
The aim of this bulletin is to delineate the essential information about medicine and human disease. In the first volume of this bulletin, we have discussed aware that India is facing an extraordinary challenge to protect its citizens from the rapidly spreading COVID-19 pandemic all around the globe. It is a time of demand to do efforts against this pandemic, demands the contribution of youth to act against the spread of COVID-19 across India. The technical education community in the country is well-capable of serving the humanity by utilizing the knowledge and resources.
We have a great responsibility of not only making the people aware of precautionary measures but also to provide a solution or helping hand to strengthen the Government, peoples and School Children in combating the COVID-19.
I hope this manageable Bulletin would serve to provide unique information for COVID 19 prevention, progression and control. My sincere thanks are due to my colleagues for their valuable comments and suggestions.
Dr. A. K. Gupta
Genetic code, Deciphering of genetic code, properties of genetic code, Initiation & termination of codons, Gene Mutation, non sense codon, release factors, Transition , Trans versions
The distinctive character of modern biology is the study of biology as information. Merging of biology and information sciences is a fundamental drive in biomedicine. Indeed, the post-genomic era is providing a huge of amount of molecular data, pertaining to different levels of evidence, which requires specific expertise in raw data processing, explorative data analysis and systems biology.
Translational genomics relies on our ability to recognize the functional elements of the genome and to disentangle the complexity of their interactions, starting from the sequence and following its implications in transcriptomics, proteomics, metabolomics, epigenomics. The promise of genomic medicine is improved diagnosis and treatment through the application of genomic information and technologies, leading to precision medicine.
This talk will give an overview of computational genomics and its current challenges.
Genetic code, Deciphering of genetic code, properties of genetic code, Initiation & termination of codons, Gene Mutation, non sense codon, release factors, Transition , Trans versions
The distinctive character of modern biology is the study of biology as information. Merging of biology and information sciences is a fundamental drive in biomedicine. Indeed, the post-genomic era is providing a huge of amount of molecular data, pertaining to different levels of evidence, which requires specific expertise in raw data processing, explorative data analysis and systems biology.
Translational genomics relies on our ability to recognize the functional elements of the genome and to disentangle the complexity of their interactions, starting from the sequence and following its implications in transcriptomics, proteomics, metabolomics, epigenomics. The promise of genomic medicine is improved diagnosis and treatment through the application of genomic information and technologies, leading to precision medicine.
This talk will give an overview of computational genomics and its current challenges.
: The COVID-19 pandemic is spreading across the globe at an alarming rate. Corona Virus is a large
family of positive-sense, single-stranded Ribo Nuclic Acid(RNA) viruses that belong to the Nidovirales order. It
was first started in Wuhan, Hubei Province, China and then subsequently spread to dozens of other countries
becoming a global pandemic. COVID-19 manifests with a wide clinical spectrum ranging from asymptomatic
patients to septic shock and multi organ dysfunction. The most common symptoms of patients include fever (98.
6%), fatigue (69.6%), dry cough, and diarrhea. The WHO recommends collecting samples from both the upper
and lower respiratory tracts. This can be achieved through expectorated sputum, broncho-alveolar lavage or
endotrachial aspirate, These samples are then assessed for viral RNA using polymerase chain reaction(PCR).
Patients with pre-existing co-morbidities have a higher case fatality rate. These co-morbidities include diabetes (7.
3%), respiratory disease(6.5%), cardiovascular disease(10.5%), hypertension(6%) and malignncy(5.6%). Patients
without co-morbidities have a lower case fatality rate(0.9%). Preventive measures must focus on optimizing
infection control protocols, self-isolation, and patient isolation during the provision of clinical care. No confirmed
medication or vaccine has been developed. Current treatment strategies are aimed at symptomatic care and
oxygen therapy. Chloroquine phosphate and lopinavir/ritonavir have been suggested. Other suggested anti-virals
include ribavirin and abidor. Usage of personal protective equipment, washing hands, sanitization, social distance
and general awareness can stop transmission of virus. Prophylactic vaccination is required for the future
prevention of COV-related epidemic or pandemic.
Few of the latest research findings on the novel corona virus 2019 (SARS-CoV-2) have been compiled. The basic biology of corona virus, its life cycle and its evolutionary relationship with corona viruses derived from other animals (including bats and pangolin corona viruses) has been depicted highlighting it’s inter species transmission. One of the key pathogenicity and transmissibility determinants (i.e. a furin-like S1/S2 cleavage site in the S protein) unique to SARS-CoV-2 might be responsible for its distinct mechanism to promote its entry into host cells. The last slide leaves the readers with basic research questions pertaining to the genetic divergence and evolution of coronaviruses in bats, its pathogenesis and mechanism of disease transmittance. In these times of crisis due to the outbreak of novel corona virus 2019 in Wuhan and subsequently leading to a pandemic, it is important to understand the basic biology of corona virus and the latest research findings related to its cross species transmission and key pathogenicity determinant that allows the novel corona virus a distinct mechanism to gain entry into the host cells. The structural biology approach to study the interaction of SARS-CoV-2 spike protein with receptor binding domain of angiotensin-converting enzyme-2 (ACE2) is underway and it is hoped that these findings will help in the design of new vaccines candidates targeting SARS-CoV-2 spike protein.
A pneumonia of unknown cause detected in Wuhan, China was first reported to the WHO
Country Office in China on 31 December 2019.In the last Nine months, almost Ten lakhs of
lives have already been Death, around three billion of people are in quarantine, and global
economies have been decreased. The outbreak of pandemic Covid-19 all over the world has
broken down the political, social, economic, religious and financial structures of the whole
world. The World’s top economies country such as the Australia, USA, India China, UK,
Germany, France, Italy, Japan and many others. The Stock Markets around the world have
been broken down and oil prices have fallen off a cliff. A report was published on BBC where
they describe every single week 3.3 million Americans have been unemployment and a week
later another 6.6 million people started searching for new jobs. The novel coronavirus is a
microscopic organism that has become an epidemic over time around the world. The United
States, Europe, Britain, Italy, Spain and France have already been hit by the virus. These
countries have already become mortal by Corona virus.
Coronaviruses are a family of viruses that cause disease in animals. Seven, including the new virus, have made the jump to humans, but most just cause cold-like symptoms.
Two other coronaviruses – Middle East respiratory syndrome (Mers) and severe acute respiratory syndrome (Sars) – are much more severe,
ANTI-VIRAL HERBAL PHYTOCONSTITUENTS OF TULSI (OCIMUM SANCTUM) AGAINST COVID-1...Yamini Shah
A novel corona virus originated from Wuhan, China in 2019. Millions of people were affected due to this virus outbreak and quarantined for almost 2 years resulting in great loss in millions of lives in the world. This also resulted in a great impact in economy and health sector globally. After the outbreak the development of cure against SARS-CoV-2 is in full motion, less efforts have been spent on the prevention of rapidly spreading respiratory infectious agents. At present there is no effective treatment that could mitigate SARS-CoV-2. Available clinical intervention for covid-19 is only limited to support. Due to dreadful situation caused by COVID-19, there is an immediate need to discover potent therapeutic agents and targeted deliveries which can inhibit COVID-19 entry, progression and spread in human beings. Comprehensive understanding on the life cycle of SARS-CoV-2viruses and their interaction with hosts is important in the fight against these viruses. Thus, there is an urgent need for effective treatment. Intensive research on synthetic, semi synthetic, herbal, ayurvedic, siddha and unani drugs is necessary for this cause. In this review we focus on literature investigated on herbal drugs which might help in inhibition of COVID-19 via inhibition of angiotensinogen converting enzyme (ACE) and RNA dependent RNA polymerase (RdRp) through computational studies using AutoDockVina followed by their formulation development.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
2. CONTENT
What İs Corona Virus ?
Comparison of COVID-19 With
Others
Genome structure of COVID-19
Potential treatments of COVID-19
Summary
Life Cycle of COVID-19
References
3. What İs Corona Virus
?
Coronaviruses are involved in human and vertebrate’s diseases
that cause severe acute respiratory syndrome
The recent emergence of novel coronavirus with an outbreak of
unusual viral pneumonia in Wuhan, China
Based phylogenetic relationships of COVID19, it belongs to
genera Betacoronavirus
4. Genome Structure of COVID-
19
The genome is single-stranded positive-sense
RNA (+ssRNA) molecule.
Contains at least six ORFs.
The First ORFs (ORFa/b) located at 5’ end,
about two-thirds of the whole genome.
Encodes 16 NSP (non-structural proteins).
Other ORFs located at 3’ end and encode
structural proteins
5. Life Cycle of COVID19
1) Spike protein binds to host cell reseptor, enter the
cell and envelope is peeled off for RNA release
2) pp1a and pp1ab proteins are produced, cleaved
by protease to make total 16 NSPs
3) Subgenomic RNAs produced by transcription and
translation into structural proteins
4) Nucleoprotein complex occured and enter to ER
with structural proteins
5) They merge into the complete virus particle in
golgi
6) Excreted to extracellular region through golgi
vesicles
6. SARS-CoV 2 (COVID19) Vs SARS-CoV and
MERS-CoV They are all belongs to Betacoronaviruses
At 5’ end, Pb1ab is the first ORF of whole genome lenght encoding NSPs, but different
bp among ß-coronaviruses
Even at spike proteins and arrangement of N, E, M proteins there are differences.and
Less similar to SARS-CoV (about 79%) and MERS-CoV (about 50%).
7. Potential Treatment of COVID 19
There are different methods for treatment of COVID19
Antiviral drugs using for interfere of viral replication machinery in target
cells
Oseltamivir, peramivir, and zanamivir are neuraminidase inhibitors which
help to COVID19 treatment
SARS-CoV-Specific Human Monoclonal Antibody (CR3022)
CRISPR/Cas13d System is another treatment way
8. Summary
COVID19 belongs to ß-coronaviruses and causes severe acute respiratory
sendrome.
This virus has a large +ssRNA genome, encode NSPs and structural proteins
There are several stages for production of complete virus particle
Less similar to SARS-CoV (about 79%) and MERS-CoV (about 50%).
Even there are different possible methods which help to treatment of COVID19, no
certain way for cure
9. References
Mousavizadeh, L., Ghasemi, S., (2020), Genotype and phenotype of COVID-19: Their roles in
pathogenesis, Journal of Microbiology , 1684-1182, https://doi.org/10.1016/j.jmii.2020.03.022
Alanagreh, L., Alzoughool, F., Atoum, M., (2020), The Human Coronavirus Disease COVID-19:
Its Origin, Characteristics, and Insights into Potential Drugs and Its Mechanisms, MDPI, 9 (331),
https://dx.doi.org/10.3390/pathogens9050331
Fan, H.-H.; Wang, L.-Q.; Liu, W.-L.; An, X.-P.; Liu, Z.-D.; He, X.-Q.; Song, L.-H.; Tong, Y.-G.
Repurposing of clinically approved drugs for treatment of coronavirus disease 2019 in a 2019-
novel coronavirus (2019-nCoV) related coronavirus model. Chin. Med. J. 2020.
Colson, P.; Rolain, J.-M.; Lagier, J.-C.; Brouqui, P.; Raoult, D. Chloroquine and
hydroxychloroquine as available weapons to fight COVID-19. Int. J. Antimicrob. Agents 2020,
55, 105932.
Yao, X.; Ye, F.; Zhang, M.; Cui, C.; Huang, B.; Niu, P.; Liu, X.; Zhao, L.; Dong, E.; Song, C.; et
al. In vitro antiviral activity and projection of optimized dosing design of hydroxychloroquine for
the treatment of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Clin. Infect.
Dis. 2020.
Coronaviruses are involved in human and vertebrate’s diseases and members of subfamily Coronavirinae in the family Coronaviridae and order Nidovirales.
The recent emergence of a novel coronavirus with an outbreak of unusual viral pneumonia in Wuhan, China and then pandemic outbreak is 2019-nCoV or COVID-19.
Based on phylogenetic relationships of COVİD-19, it belongs to genera Betacoronavirus which has close similarity of sequence of COVID19 to that of severe acute respiratory syndrome-related coronaviruses (SARSr-CoV)
COVID19 uses ACE2 as entry reseptor like SARS-CoV. These similarities of the SARSCoV- 2 to the one that caused the SARS outbreak (SARSCoVs) the Coronavirus Study Group of the International Committee on Taxonomy of Viruses termed the virus as SARS-CoV-2.
Coronavirus cases are about 6 Mn, deaths are 369,127 and about 2 Mn recovered
The CoVs genome is a single-stranded positive-sense RNA (+ssRNA) molecule. The genome size ranges between 27–32 kbp, one of the largest known RNA viruses.
The genomic structure of CoVs contains at least six open reading frames (ORFs). The first ORFs (ORF1a/b), located at the 5’ end, about two-thirds of the whole genome length, and encodes 16 non-structural proteins (NSP1- NSP16). These NSPs are processed to form a replication–transcription complex (RTC) that is involved in genome transcription and replication. For example, NSP3 and NSP5 encode for Papain-like protease (PLP) and 3CL-protease, respectively. Both proteins function in polypeptides cleaving and block the host innate immune response. NSP12 encodes for RNA-dependent RNA polymerase (RdRp). NSP15 encodes for RNA helicase.
Other ORFs are located on 3’ end encodes at least four structural proteins: envelop glycoprotein spike (S), responsible for recognizing host cell receptors. Membrane (M) proteins, responsible for shaping the virions. The envelope (E) proteins, responsible for virions assembly and release. The nucleocapsid (N) proteins are involved in packaging the RNA genome and in the virions and play roles in pathogenicity as an interferon (IFN) inhibitor.
In addition to the four main structural proteins, there are structural and accessory proteins that are species-specific, such as HE protein, 3a/b protein, and 4a/b protein.
When the spike protein of SARS-CoV-2 binds to the receptor of the host cell, the virus enters the cell, and then the envelope is peeled off, which let genomic RNA be present in the cytoplasm.
The ORF1a and ORF1b RNAs are made by genomic RNA, and then translated into pp1a and pp1ab proteins, respectively. Protein pp1a and ppa1b are cleaved by protease to make a total of 16 nonstructural proteins.
Some nonstructural proteins form a replication/transcription complex (RNA-dependent RNA polymerase, RdRp), which use the (+) strand genomic RNA as a template. The (+) strand genomic RNA produced through the replication process becomes the genome of the new virus particle.
Subgenomic RNAs produced through the transcription are translated into structural proteins (S: spike protein, E: envelope protein, M: membrane protein, and N: nucleocapsid protein) which form a viral particle.
Spike, envelope and membrane proteins enter the endoplasmic reticulum, and the nucleocapsid protein is combined with the (+) strand genomic RNA to become a nucleoprotein complex.
They merge into the complete virus particle in the endoplasmic reticulum-Golgi apparatus compartment, and are excreted to extracellular region through the Golgi apparatus and the vesicle.
İn all Betacoronaviruses The 5’ UTR and 3’ UTR are involved in inter- and intramolecular interactions and are functionally important for RNA-RNA interactions and for binding of viral and cellular proteins.
At 5’ end, Pb1ab is the first ORF of the whole genome length encoding non-structural proteins of 29844bp (7096aa), 29751bp (7073aa) and 30119bp (7078) in COVID-19, SARS-CoV; and MERS-CoV, respectively.
Even with comparison of the spike protein at 3’ end, among the coronaviruses specifically these three betacoronaviruses, the difference was visualized, 1273aa, 21493aa, and 1270aa.
Genetically, COVID-19 was less similar to SARS-CoV (about 79%) and MERS-CoV (about 50%).
The arrangement of nucleocapsid protein (N), envelope protein(E), and membrane protein (M) among betacoronaviruses are different
Antiviral drugs usually interfere with the viral replication machinery in the target cells. Given that viruses have similar actions of infection, different studies suggest the use of successful antiviral drugs for the treatment of COVID-19.
Oseltamivir, peramivir, and zanamivir are neuraminidase inhibitors that have been used for influenza treatment. A recent report suggests the potential activity of these
drugs against SAS-CoV-2 by interfering with the virions budding and releasing from the cell. However, this virus uses different mechanisms other than neuraminidase facilitate its release out of the infected cell.
Another recent study suggests that ribavirin if combined with interferon-ß might be a promising drug for inhibition of SARS-CoV-2 replication. Although this claim was based on previous in vitro findings, other studies have shown the same results.
There are many drugs with general antiviral activity; that can interfere with vial entry or blocking the virus.
CR3022 is a human monoclonal antibody previously isolated from a convalescent patient, used to target a highly conserved epitope that enables cross-reactive binding between SARS-CoV-2 and SARS-CoV. CR3022 might have the potential to be candidate therapeutics for the and treatment of COVID-19 patients, especially in life-threatening situations.
Currently, there is an ambitious study suggesting that CRISPR/Cas13d system can be used to accurately digest the SARS-CoV-2 RNA genome, hence limiting its ability to reproduce. Theoretically, this approach is excellent not only against COVID-19 but for the treatment and prevention of different RNA viruses’ infections. However, we have no idea if it is practical or not.