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TRKing the path to precision oncology; the NTRK story
Poul Sorensen, MD, PhD
BC Cancer Research Centre
Vancouver, BC, Canada
There is an increasing shift toward targeted therapy for cancer
CONFIDENTIAL 2
Chemotherapy Targeted Therapy
• In personalized medicine,
clinicians use biomarkers to
predict a patient's response
to therapy
• Patients are more likely to get
therapies with the greatest
impact with fewer side effects
• Anticancer drugs may be
highly effective in some, but
less effective in others
• Patients are exposed to the
risk of side effects
Personalized Oncology (Precision Oncology) -- incorporating
genomic information into treatment decision-making
EGFR
mutation
ALK1
fusion
ROS1
fusion
Checkpoint
inhibitors
erlotinib crizotinib
Genomic sequencing of
lung tumors
crizotinib
Mutation burden
pembrolizumab
nivolumab
PD-L1
atezolizumab
LungCancer
Chemotherapy
TissueBiopsy
Generic pathology
based care
Liquid biopsy and other
specialized pathology
techniques
osimertinib
EGFR resistance
mutation
Histomolecular entity versus molecular subtypes of a
common cancer: the ski resort analogy
• Molecular subtypes of
common cancer
Multiple pathogenetic
pathways and treatment
options
• Histomolecular entity
Single pathogenetic
pathway and dominant
treatment
Four Major Types of Genomic Alterations in Cancer
Single nucleotide substitutions
(including splice sites)
Small insertions/deletions*
Copy number
amplifications
Rearrangements/
fusions
T T
A A C C
G
T C
A A C C
G
Next round
of replication
G-C and A-T base pairs
deleted
Next round
of replication
A-T base pair added
• Activating Mutations in Oncogenes OR Disruptive Mutations in Tumor Suppressors
• e.g. NTRK fusions
Gene fusions: chimeric genes formed from fusion of coding sequences from
two normally separate partner genes
Discovery of the
ETV6-NTRK3 gene
fusion in pediatric
sarcomas
By microscopy, benign fibromatosis can look identical to
malignant congenital fibrosarcoma
Fibromatosis Congenital Fibrosarcoma
Could we find a cytogenetic or molecular marker to distinguish
these two entities?
t(12;15)(p13;q25) in congenital
fibrosarcoma
SAM
ETV6 (chr 12)
ETV6-NTRK3
kinase
NTRK3 (chr 15)
PI3K
AKT
Bcl-2
cell
survival
Ras
Erk1/2
Cyclin D1
GTP
Cell growth
and division
Ectopic expression of ETV6-NTRK3 transforms mouse fibroblasts
1. Changes in cell
appearance
2. Ability to grow without
attachment to
underlying tissues
(soft agar colony
formation)
3. Cells tumorigenic in
nude mice
Control ETV6-NTRK3
D. Wai et al, Oncogene 2000
Control ETV6-NTRK3
Mammary-analogue secretory
carcinoma (MASC) of salivary glands
Photomicrograph courtesy of Dr. Ken Berean
Human secretory breast carcinoma
ETV6-NTRK3 is a pathognomonic biomarker in both diseases, despite different histologies and anatomic locations
Hyperplasia Tumors in other mammary glands
DCIS?
Tumor focus
Tognon et al, Cancer Cell, 2002; Li et al, Cancer Cell, 2007
Human secretory breast carcinoma
Tognon et al, Cancer Cell, 2002
Breast cancer in Etv6-NTRK3
knockin mouse
Li et al, Cancer Cell, 2007
Proof of the oncogenicity of ETV6-NTRK3: different features of secretory
breast carcinomas arising in the same ETV6-NTRK3 mouse model
Normal physiological functions of NTRK1/2/3 (TRKA, B, and C)
PLCy
MAPK PI3K
Pain
Thermoregulation
Movement
Memory
Appetite
Metabolic homeostasis
Proprioception
NGF/
NT3
BDNF
/
NT4
NT3
Ligand binding domain
Kinase domain
Ligand dependent phosphorylation P P
NTRK1/2/3
gene
TRKA/B/C
protein
P P
The advent of next generation sequencing has identified numerous other gene fusion
variants involving all three NTRK genes, and across multiple tumor types
Vaishnavi A, et al. Cancer Discov. 2015;5:25-34.
Drilon A, et al. N Engl J Med. 2018;378:731-739.
- LMNA-NTRK1 oncogenic fusion in a soft tissue sarcoma in 41 yo female
NTRK fusions involve many different partner genes and in
different diseases with high clinical unmet need
Adult Pediatric/Young adult
Papillary thyroid cancer3,4
• NTRK1 fusion frequency: 11.8%
• ETV6-NTRK3 fusion frequency
(post-Chernobyl): 14.5%
Intrahepatic cholangiocarcinoma6
• NTRK1 fusion frequency: 3.6%
Glioblastoma multiforme1
• NTRK1 fusion frequency: 1%
Secretory breast cancer5
• NTRK3 fusion frequency: 92%
Mammary analogue secretory cancer2
• NTRK3 fusion frequency: >90%
Pilocytic astrocytoma8
• NTRK2 fusion frequency: 3.1%
Pediatric high-grade glioma7
• NTRK1/2/3 fusion frequency: 10%
Congenital fibrosarcoma9,10
• NTRK3 fusion frequency: 91–100%
Congenital mesoblastic nephroma (cellular
subtype)10-11
• NTRK3 fusion frequency: 83–92%
NTRK gene fusion frequencies reported from isolated case reports which used variable methodologies to detect these
genetic alterations
• NTRK1-3 fusions associated with many different human
cancers
– At least 25 different tumor types, including breast
cancer, ovarian cancer, colorectal cancer, melanoma,
and lung cancer
– Implicated in up to 1% of all solid tumor malignancies
– NTRK gene fusions result from gene translocation
events
• Result in overexpression and constitutive ligand-
independent activation of NTRK kinase domains
All three NTRK genes implicated in oncogenic fusions
• Suggested the possibility of targeting all
3 NTRKs with the same drug
Miracle in the Making
Ted Taylor GBM Survivor
The Diagnosis
• ER 2x Severe
Headaches
• Dr. 1x
• Final ER insist
• Receiving the news
• Surgeon next day
• Surgery 6 days
later Oct 31, 2018
• Research begins!
• Sat down Nov. 26,
2018 News
Research Vitrakvi
• Began research discovered 1%
• Brought Vitrakvi to my Oncologists
• Not available in Canada but step 1 was that I
needed genetic testing.
• Foundation One Cambridge, Massachusetts
• Result verification needed fore & background.
• Oncologist & Pharmacist application to Health
Canada
Approval Process
• Health Canada approval Special Access
Program as an initial patient for Larotrectinib
• Bayer required the Foundation One report
• Bayer approval
• Shipped from UK to Germany to Vancouver
and awaited shipment at the pharmacy
• Began taking capsule on Good Friday 2019
Hope
• Efficacy 75 22 Complete initial
response
• Nothing like this ever before
• TMZ largest breakthrough in 15
years - weeks
• Standard of Care 14.6 months for
my median survival with all
achievements in human history.
• In most cases optimal treatment,
patients have a median survival of
less than one year, there is no cure
and a high rate of recurrence.
Only 25% of patients survive more
than one year. The U.S. National
Center for Biotechnology
Information (NCBI) lists long term
survival beyond three years limited
to less than 2% of patients. 98%
chance you do not make it.
Side Effects & Adjustments
• Take Vitrakvi 2x per day
with breakfast and
dinner daily.
• Side effects Increased
liver enzymes AST & ALT
• Liver enzymes – my
research (In trials some
had to stop – be your
own best advocate)
• Water intake, 3L,4L,5L
adjustments, Bilirubin's
ALT
Before Adjusting Water and
Bilirubin’s graph is Parabolic
AST
After Adjustments Normal range or
slightly above – Be your own best
advocate.
Side Effects & Adjustments
• Juxtapose against Standard of Care. TMZ reaction & immune,
Red, White, Platlets. 6x Platlet Transfusions. Radiation 60 gy.
Was told 100% I would lose my hearing in right ear. Increase
radius of additional 2.5cm Fatigue, stamina, memory
Not the same person but blessed to
be alive and kept calm, friendly
personality.
Liquid vs.
Capsule
• April 19, 2019 started Capsule Vitrakvi
• September 07, 2019 started liquid. (Health
Canada approval July 31, 2019; but, approval
was only for the liquid version).
• Purpose dose vs. practical impact for adults
• Worked with Health Canada to work towards
capsules being approved. Back to capsules
December 2020.
Scans & Results
• Scans and results
- Midline shift. Tumor location shrinking
• Personal Impact on
me – save
• Comparison
. . .
1% and the Future
• 1%
• 100 people watching
• How many doctors watching with how many
patients with any solid form cancers?
• Future of medicine get tested. No matter how
up to date your oncologists and doctors are
they simply cannot know every new drug or
treatment. Research and become your own
best advocate. Work with receptive oncologist
Personal Impact
• What Can I do?
• Be your own best advocate
• I want to help others.
• Keto, Boswellia-Dex,
• Hyperthermia
• Exercise
• Stay at peace
• Relax time, walks, family & friends
• Quiet time
Glioblastoma Guide
www.glioblastomaguide.com
YouTube Channel: Glioblastoma Guide
Thank You
My Oncologists, Pharmacist,
Surgeon, support of my family,
friends, and all those who
helped make Vitrakvi possible
which is part of my
“Miracle in the Making”
Canadian Cancer Survivor Network
Contact Info
1750 Courtwood Crescent, Suite 210
Ottawa, ON K2C 2B5
Telephone / Téléphone : 613-898-1871
E-mail: jmanthorne@survivornet.ca or info@survivornet.ca
Website: www.survivornet.ca
Twitter: @survivornetca
Facebook: www.facebook.com/CanadianSurvivorNet
Instagram: @survivornet_ca
Pinterest: http://pinterest.com/survivornetwork/

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Tumour Agnostic Treatments

  • 1. TRKing the path to precision oncology; the NTRK story Poul Sorensen, MD, PhD BC Cancer Research Centre Vancouver, BC, Canada
  • 2. There is an increasing shift toward targeted therapy for cancer CONFIDENTIAL 2 Chemotherapy Targeted Therapy • In personalized medicine, clinicians use biomarkers to predict a patient's response to therapy • Patients are more likely to get therapies with the greatest impact with fewer side effects • Anticancer drugs may be highly effective in some, but less effective in others • Patients are exposed to the risk of side effects
  • 3. Personalized Oncology (Precision Oncology) -- incorporating genomic information into treatment decision-making EGFR mutation ALK1 fusion ROS1 fusion Checkpoint inhibitors erlotinib crizotinib Genomic sequencing of lung tumors crizotinib Mutation burden pembrolizumab nivolumab PD-L1 atezolizumab LungCancer Chemotherapy TissueBiopsy Generic pathology based care Liquid biopsy and other specialized pathology techniques osimertinib EGFR resistance mutation
  • 4. Histomolecular entity versus molecular subtypes of a common cancer: the ski resort analogy • Molecular subtypes of common cancer Multiple pathogenetic pathways and treatment options • Histomolecular entity Single pathogenetic pathway and dominant treatment
  • 5. Four Major Types of Genomic Alterations in Cancer Single nucleotide substitutions (including splice sites) Small insertions/deletions* Copy number amplifications Rearrangements/ fusions T T A A C C G T C A A C C G Next round of replication G-C and A-T base pairs deleted Next round of replication A-T base pair added • Activating Mutations in Oncogenes OR Disruptive Mutations in Tumor Suppressors • e.g. NTRK fusions Gene fusions: chimeric genes formed from fusion of coding sequences from two normally separate partner genes
  • 6. Discovery of the ETV6-NTRK3 gene fusion in pediatric sarcomas
  • 7. By microscopy, benign fibromatosis can look identical to malignant congenital fibrosarcoma Fibromatosis Congenital Fibrosarcoma Could we find a cytogenetic or molecular marker to distinguish these two entities?
  • 8. t(12;15)(p13;q25) in congenital fibrosarcoma SAM ETV6 (chr 12) ETV6-NTRK3 kinase NTRK3 (chr 15) PI3K AKT Bcl-2 cell survival Ras Erk1/2 Cyclin D1 GTP Cell growth and division
  • 9. Ectopic expression of ETV6-NTRK3 transforms mouse fibroblasts 1. Changes in cell appearance 2. Ability to grow without attachment to underlying tissues (soft agar colony formation) 3. Cells tumorigenic in nude mice Control ETV6-NTRK3 D. Wai et al, Oncogene 2000 Control ETV6-NTRK3
  • 10. Mammary-analogue secretory carcinoma (MASC) of salivary glands Photomicrograph courtesy of Dr. Ken Berean Human secretory breast carcinoma ETV6-NTRK3 is a pathognomonic biomarker in both diseases, despite different histologies and anatomic locations
  • 11. Hyperplasia Tumors in other mammary glands DCIS? Tumor focus Tognon et al, Cancer Cell, 2002; Li et al, Cancer Cell, 2007 Human secretory breast carcinoma Tognon et al, Cancer Cell, 2002 Breast cancer in Etv6-NTRK3 knockin mouse Li et al, Cancer Cell, 2007 Proof of the oncogenicity of ETV6-NTRK3: different features of secretory breast carcinomas arising in the same ETV6-NTRK3 mouse model
  • 12. Normal physiological functions of NTRK1/2/3 (TRKA, B, and C) PLCy MAPK PI3K Pain Thermoregulation Movement Memory Appetite Metabolic homeostasis Proprioception NGF/ NT3 BDNF / NT4 NT3 Ligand binding domain Kinase domain Ligand dependent phosphorylation P P NTRK1/2/3 gene TRKA/B/C protein P P
  • 13. The advent of next generation sequencing has identified numerous other gene fusion variants involving all three NTRK genes, and across multiple tumor types Vaishnavi A, et al. Cancer Discov. 2015;5:25-34. Drilon A, et al. N Engl J Med. 2018;378:731-739.
  • 14. - LMNA-NTRK1 oncogenic fusion in a soft tissue sarcoma in 41 yo female
  • 15. NTRK fusions involve many different partner genes and in different diseases with high clinical unmet need Adult Pediatric/Young adult Papillary thyroid cancer3,4 • NTRK1 fusion frequency: 11.8% • ETV6-NTRK3 fusion frequency (post-Chernobyl): 14.5% Intrahepatic cholangiocarcinoma6 • NTRK1 fusion frequency: 3.6% Glioblastoma multiforme1 • NTRK1 fusion frequency: 1% Secretory breast cancer5 • NTRK3 fusion frequency: 92% Mammary analogue secretory cancer2 • NTRK3 fusion frequency: >90% Pilocytic astrocytoma8 • NTRK2 fusion frequency: 3.1% Pediatric high-grade glioma7 • NTRK1/2/3 fusion frequency: 10% Congenital fibrosarcoma9,10 • NTRK3 fusion frequency: 91–100% Congenital mesoblastic nephroma (cellular subtype)10-11 • NTRK3 fusion frequency: 83–92% NTRK gene fusion frequencies reported from isolated case reports which used variable methodologies to detect these genetic alterations
  • 16. • NTRK1-3 fusions associated with many different human cancers – At least 25 different tumor types, including breast cancer, ovarian cancer, colorectal cancer, melanoma, and lung cancer – Implicated in up to 1% of all solid tumor malignancies – NTRK gene fusions result from gene translocation events • Result in overexpression and constitutive ligand- independent activation of NTRK kinase domains All three NTRK genes implicated in oncogenic fusions • Suggested the possibility of targeting all 3 NTRKs with the same drug
  • 17. Miracle in the Making Ted Taylor GBM Survivor
  • 18. The Diagnosis • ER 2x Severe Headaches • Dr. 1x • Final ER insist • Receiving the news • Surgeon next day • Surgery 6 days later Oct 31, 2018 • Research begins! • Sat down Nov. 26, 2018 News
  • 19. Research Vitrakvi • Began research discovered 1% • Brought Vitrakvi to my Oncologists • Not available in Canada but step 1 was that I needed genetic testing. • Foundation One Cambridge, Massachusetts • Result verification needed fore & background. • Oncologist & Pharmacist application to Health Canada
  • 20. Approval Process • Health Canada approval Special Access Program as an initial patient for Larotrectinib • Bayer required the Foundation One report • Bayer approval • Shipped from UK to Germany to Vancouver and awaited shipment at the pharmacy • Began taking capsule on Good Friday 2019
  • 21. Hope • Efficacy 75 22 Complete initial response • Nothing like this ever before • TMZ largest breakthrough in 15 years - weeks • Standard of Care 14.6 months for my median survival with all achievements in human history. • In most cases optimal treatment, patients have a median survival of less than one year, there is no cure and a high rate of recurrence. Only 25% of patients survive more than one year. The U.S. National Center for Biotechnology Information (NCBI) lists long term survival beyond three years limited to less than 2% of patients. 98% chance you do not make it.
  • 22. Side Effects & Adjustments • Take Vitrakvi 2x per day with breakfast and dinner daily. • Side effects Increased liver enzymes AST & ALT • Liver enzymes – my research (In trials some had to stop – be your own best advocate) • Water intake, 3L,4L,5L adjustments, Bilirubin's
  • 23. ALT Before Adjusting Water and Bilirubin’s graph is Parabolic
  • 24. AST After Adjustments Normal range or slightly above – Be your own best advocate.
  • 25. Side Effects & Adjustments • Juxtapose against Standard of Care. TMZ reaction & immune, Red, White, Platlets. 6x Platlet Transfusions. Radiation 60 gy. Was told 100% I would lose my hearing in right ear. Increase radius of additional 2.5cm Fatigue, stamina, memory Not the same person but blessed to be alive and kept calm, friendly personality.
  • 26. Liquid vs. Capsule • April 19, 2019 started Capsule Vitrakvi • September 07, 2019 started liquid. (Health Canada approval July 31, 2019; but, approval was only for the liquid version). • Purpose dose vs. practical impact for adults • Worked with Health Canada to work towards capsules being approved. Back to capsules December 2020.
  • 27. Scans & Results • Scans and results - Midline shift. Tumor location shrinking • Personal Impact on me – save • Comparison
  • 28. . . .
  • 29. 1% and the Future • 1% • 100 people watching • How many doctors watching with how many patients with any solid form cancers? • Future of medicine get tested. No matter how up to date your oncologists and doctors are they simply cannot know every new drug or treatment. Research and become your own best advocate. Work with receptive oncologist
  • 30. Personal Impact • What Can I do? • Be your own best advocate • I want to help others. • Keto, Boswellia-Dex, • Hyperthermia • Exercise • Stay at peace • Relax time, walks, family & friends • Quiet time
  • 32. Thank You My Oncologists, Pharmacist, Surgeon, support of my family, friends, and all those who helped make Vitrakvi possible which is part of my “Miracle in the Making”
  • 33. Canadian Cancer Survivor Network Contact Info 1750 Courtwood Crescent, Suite 210 Ottawa, ON K2C 2B5 Telephone / Téléphone : 613-898-1871 E-mail: jmanthorne@survivornet.ca or info@survivornet.ca Website: www.survivornet.ca Twitter: @survivornetca Facebook: www.facebook.com/CanadianSurvivorNet Instagram: @survivornet_ca Pinterest: http://pinterest.com/survivornetwork/