Thomas ecn2013
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The KU Biodiversity Institute's Division of Entomology has launched a new Specify 6 Web Portal allowing online access to its collection records. The portal was created by exporting data from the Specify database using the Schema Mapper and Data Export tools and loading it into the new Specify Web Portal installation. The portal provides remote access to the division's records, which were previously only accessible on-site through the Specify workbench database software.
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пмк стох мом_истории2014
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معالجة المعلومات فى جهاز الإبصار
القشرة المخية البصرية ( visual cortex)
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DevNetCreate Workshop - build a react app - React crash course
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Price2 ecn2013
The document discusses the digitization of the microscope slide collection at the Natural History Museum in London. It contains over 2 million slides that are being digitized to make them accessible online. The process involves labeling each slide with a unique ID, handling and preparing the slides for imaging, high resolution imaging using various cameras and scanners, and post-processing the images for storage and delivery online. Imaging hardware trials showed that different cameras and resolutions were better suited to different types and storage of slides. Over 4000 insect slides were digitized as a pilot project in a few days. Future plans include digitizing type specimens and improving the handling process which is currently the bottleneck in the workflow.
Sikes ecn2013 dn_ab
This document discusses building a DNA barcode library of Alaska's nonmarine arthropod species. The goal is to create a publicly available resource documenting which species occur in Alaska, where they are located, and their natural history. The plan is to barcode around 2,000 species, or 30% of the state's nonmarine arthropod fauna, by contributing samples and data to the International Barcode of Life database. Methods describe comparing two labs for DNA barcoding and choosing the Canadian Centre for DNA Barcoding. The project will improve biological data, aid species identification and monitoring, and help curate museum specimens.
Ryder ecn2013
The document discusses the oldest insect collection at the Natural History Museum in London. It provides background on the early homes and founders of the collection, including Montagu House, The Waterhouse Building, Sir Hans Sloane, and James Petiver. It then describes the fragile state of three historic bound volumes from the collections - the Sloane Insect Collection, Leonard Plukenet volume, and two Petiver Volumes. The document outlines conservation challenges faced with these volumes and plans for continued conservation work, digitization, and future access and study of the collections.
Janzen ecn2013
The document discusses a development company that works with tropical real estate in Costa Rica. It describes the Area de Conservacion Guanacaste (ACG) in Costa Rica, which covers 1,200 square km and contains a high level of biodiversity. The company is adding DNA barcoding to catalog the complex ecosystems in ACG and help build an online database of life on Earth through the International Barcode of Life project. Barcoding involves identifying species via short gene sequences and will help researchers locate specimens within the taxonomic classification system.
Nearns ecn2013
The document discusses the modernization efforts of the Entomological Society of Washington (ESW), including launching a new website in 2008, creating an online membership database, and making its journal Proceedings of the ESW available online from volume 1 through BioOne. It also announces the establishment of an ESW Student Award to encourage submissions to the journal and provides information on registering for the ESW-sponsored HYM Course in August 2014.
Krell ecn2013
The document discusses new rules for electronic publishing of zoological nomenclature established by the International Commission on Zoological Nomenclature in 2011. It outlines the requirements for electronic-only publication, including being published after 2011, having wide accessibility, being archived permanently, and being registered in ZooBank. Registration in ZooBank of names and publications is encouraged but not mandatory.
D paul ecn2013
This document summarizes key points from a presentation given at the Entomological Collections Network meeting about the Biodiversity Information Standards (TDWG) Conference 2013. The presentation discussed iDigBio's goals of building an accessible database of US specimen data and facilitating digitization. It provided an overview of TDWG topics like data quality, semantics, and standards. Researchers, collections managers, and others were encouraged to get involved in TDWG to help bridge the gap between research data and databases and avoid duplicating efforts.
Giddens ecn2013
This document discusses solutions for digitizing scientific collections and making data available online. It outlines services for optimizing image capture, processing label images, creating collection portals, developing interactive maps, and providing technical support. It also summarizes techniques for digitization including optical character recognition, machine learning, crowdsourcing, and human verification. Web portal features are shown including taxonomy browsing, custom checklists, specimen details, and interactive mapping of occurrence data.
Dombroskie ecn2013
The document discusses the modern role of insect collections at land grant universities using the Cornell University Insect Collection as a case study. It summarizes the history and current state of the CUIC, emphasizing the importance of collections for research, student training, and public outreach. It also addresses funding challenges and proposes efficient uses of funding like creating taxonomic lists to engage students and produce high quality data.
Dmitriev ecn2013
This document summarizes the history and digitization efforts of the Illinois Natural History Survey (INHS) insect collection, one of the largest and oldest insect collections in North America. It details the establishment and growth of the collection from 1858 to the present day. It also describes ongoing efforts to digitize the nearly 7 million specimen collection through high resolution imaging, database development, and georeferencing. The goals are to make the collection accessible online through platforms like GBIF and to support research through collaborative projects on topics like fossil insects.
Oboyski ecn2013
This document provides an overview of the CalBug citizen science project, which aims to digitize over 1.2 million insect specimens from collections in California. It discusses how volunteers can transcribe label data from digitized specimen images online through the Zooniverse platform. The transcriptions are reconciled and added to a database, helping make the specimen data accessible for research. Generating volunteer interest requires efforts like highlighting particular taxa, competitions with prizes, and linking to educational resources.
Jones ecn2013 the_goodbadugly conabio
This document provides an overview of CONABIO and BIOTICA, Mexico's biodiversity databases. CONABIO was established in 1992 to coordinate and promote knowledge and use of Mexico's biodiversity. It is funded primarily through federal funds and external sources. CONABIO operates the National Biodiversity Information System (SNIB) which integrates databases, geographic information, images, and other data from over 5 million specimens. SNIB captures data from major Mexican and international collections. CONABIO also supports biological inventories and data capture through its BIOTICA software. While data becomes publicly available after 5 years, users can request specific databases from CONABIO.
Austin ecn2013
This document summarizes the Australian Fauna Directory (AFD), an online taxonomic catalogue of all valid species names for the Australian fauna. It includes over 118,000 species/subspecies names, with nearly 30,000 added and 37,000 updated since 2010. The AFD provides biological and ecological details where available. It is a cooperative effort between scientists and the Australian Biological Resources Study (ABRS), hosted on a government server for public access. Users can search by name or taxonomic group, view checklists and species information, and download data. The online editor allows authorized users to update taxonomic information.
Yu ecn2013 cnc_databasing
The document summarizes the Canadian National Collection (CNC) located in Ottawa, Canada. It contains approximately 16 million insect, arachnid and nematode specimens in 1,400 cabinets. The collection began in 1886 and includes over 12,000 primary types. It is organized into curatorial units focused on taxonomic groups. The document proposes creating a centralized dynamic website and MySQL database to catalog the variable information for each specimen and taxon, allowing remote user editing. This would improve over existing isolated databases and provide features like specimen pages, taxon pages, labels and taxonomic trees. Challenges include the collection size and integrating existing databases, but cooperation across institutions could help.
Solis ecn2013 usfws
The US Fish & Wildlife Service document provides information about their Office of Law Enforcement (OLE) which includes Special Agents who investigate wildlife crimes and Wildlife Inspectors who monitor wildlife trade at ports of entry. Special Agents conduct undercover operations and make arrests. Wildlife Inspectors monitor over $1 billion in annual wildlife trade at airports, seaports and land crossings. The document also provides guidance on importing and exporting wildlife including required permits, using their website to submit declarations electronically, and contact information for the Wildlife Inspector offices.
Schuh ecn2013 tcn_data_structure
This document summarizes an analysis of insect-host plant data derived from museum collections. It describes the development of an algorithm to assess the quality and confidence in insect-plant associations by evaluating factors like number of collecting events, host specificity, and presence of larvae. The algorithm was applied to data on aphids, plant bugs, and leafhoppers and their hosts. It identified high confidence associations and reasons for low scores, like mislabeling. The analysis concluded the data demonstrated a significant degree of host specificity and the algorithm provided a method to evaluate data quality on a large scale.
Gil ecn2013 ppt
This document summarizes an international working group on whole drawer digitization of biological collections. It lists the members of the working group and their affiliated institutions. It then discusses various issues the group is interested in, such as extracting specimen label data, inventory management, and equipment configurations for whole drawer imaging. It provides examples of different whole drawer imaging systems used by various members. It also discusses related topics like bulk sample digitization and a separate working group on fluid-preserved specimens and microscope slides. The overall purpose is to advance the digitization of biological collections at scale.
Dm smith ecn2013
The Fossil Insect Collaborative will digitize the collections of major fossil insect institutions in the US, creating records of over 500,000 specimens. The project aims to make these collections accessible online to further research on insect responses to environmental change. It involves partnerships between 7 institutions and will last 4 years, creating a central online hub called iDigPaleo to aggregate specimen data and images. This will allow researchers to interact with the dataset and further paleontological and biodiversity research.
Abrahamson ecn2013 evaluating_naturalhistorycollectionuse
This document outlines a study evaluating the use of natural history collections at the Museum of Southwestern Biology over time. The study analyzed 1,387 publications and 1,784 loans records spanning 1940-2013. Key findings include increasing trends in certain research areas like evolution and genetics for some divisions. Frequency of "life history" decreased for arthropods while "conservation" increased for fishes. Overall loans of New Mexico specimens decreased. The study provides insights into collection use and impact on science, with opportunities to expand analyses to other museums.
Furth ecn 2013
The document discusses the deactivation of collections at the National Museum of Natural History due to declining staff and resources. It provides statistics on the museum's collections and notes that staffing levels have fallen below ideal and minimum levels. Specifically, it summarizes that over 200 transactions involving over 180,000 specimens from deactivated groups occurred from 2005 to 2013. Additionally, it warns of worst case scenarios such as rotating deactivations of entire orders annually if resources continue declining.
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Overview
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Thomas ecn2013
- 1. SEMC is back on the World Wide Web! And the Specify workbench is cool too. Jennifer Thomas Assistant Collection Manager KU Biodiversity Institute – Division of Entomology
- 2. The Specify 6 Web Portal • We’ve actually been on the web since the early 2000’s… Entomology
- 3. The Specify 6 Web Portal
- 4. The Specify 6 Web Portal
- 5. The Specify 6 Web Portal
- 6. The Specify 6 Web Portal
- 7. “The Web Portal is intended for institutional web server computers; installation requires the technical expertise of a server or network administrator. Installation information is available on the Specify web site Documentation page in the file: Installing the Specify Web Portal (PDF).” ~ The Specify Project Use the Specify Schema mapper and Data Export tools to create the web cache. We used the latest version of our GBIF DwC archive file to create this first version of our web portal. Acknowledgements! Andy Bentley – Specify software project Drew Wallace – Specify software project Greg Smith – KU BI IT admin http://collections.biodiversity.ku.edu/entomology/
- 8. The Specify 6 Workbench
- 9. The Specify 6 Workbench
- 10. The Specify 6 Workbench
- 11. The Specify 6 Workbench
- 12. The Specify 6 Workbench
- 13. The Specify 6 Workbench
- 14. The Specify 6 Workbench
- 15. The Specify 6 Workbench
- 16. The Specify 6 Workbench Tips/Tricks/Hints/Words of Wisdom… Standardize, define, standardize again Remember, this is supposed to be efficient! Templates are you friend and you are supposed to *share* them. Review the mapping on each spreadsheet before uploading.