This thesis explores the development and implementation of flexible physical layer protocols on a software defined radio platform. Several protocols are mapped to the heterogeneous Intel T2200 platform containing an ARM processor, CEVA DSP and accelerators. Mapping key blocks like IFFT/FFT and decoding to the faster DSP results in significant execution time savings. Over-the-air testing is performed to validate communication between two T2200 boards for some protocols. The work aims to develop a flexible radio system that can support different protocols defined in software rather than using pre-existing hardware radios.