The document summarizes an experiment that investigated the effect of varying levels of ultraviolet (UV) light exposure on the regeneration abilities of the brown planarian (Dugesia tigrina). Planarians were exposed to UV light for 0, 1, 3, 6, 9, and 12 hours. Regeneration was assessed on days 1, 4, and 7 after exposure. Results showed that as UV exposure increased, the percentage of fully regenerated planarians decreased while the percentage that died increased. Higher UV exposure impaired blastema formation and morphallaxis, the processes required for proper regeneration. A chi-square test found a significant difference in death rates depending on UV exposure level. The goal was to determine the effect of UV
EveMicrobial Phylogenomics (EVE161) Class 9Jonathan Eisen
Microbial Phylogenomics (EVE161) at UC Davis Spring 2016. Co-taught by Jonathan Eisen and Holly Ganz.
Class 9:
Era II: rRNA Case Study: Built Environment Metaanalysis
EveMicrobial Phylogenomics (EVE161) Class 9Jonathan Eisen
Microbial Phylogenomics (EVE161) at UC Davis Spring 2016. Co-taught by Jonathan Eisen and Holly Ganz.
Class 9:
Era II: rRNA Case Study: Built Environment Metaanalysis
Molecular Biologist Academic CV for Industry or Private Sector Consideration Sirie Godshalk
Molecular Biologist with over thirteen years of hands-on research experience, impactful writer and presenter, dynamic leader and enthusiastic team player with an eye for great ideas and a passion to move science in new directions seeks challenging opportunities beyond the bench.
Planaria is a flatworm that belongs to Tubelleria class and belongs to family Planaridae family (Agata & Watanabe 1999). Planarian has ability for regeneration of lost body parts. For this process of regeneration Planaria utilizes specialized neoblast cells. These neoblast cells are undifferentiated cells that are especially present in Planaria that aids in regeneration and restoration of lost organs (Goldman, 2014). Neoblasts present in Planaria are responsible for cell proliferation activities. Concentration and functional abilities of Neoblasts define the regenerative capabilities of Planaria (Reddien & Alvarado 2004). Concentration of neoblast results in the rate of regeneration of the organs it is found to be higher in the anterior head region when compared to the posterior tail region (Goldman, 2014). This is the primary hypothesis of the experiment. The concentration of neoblast is higher in anterior region hence regeneration will be higher in the anterior region when compared to the tail region (Goldman, 2014)
Molecular Biologist Academic CV for Industry or Private Sector Consideration Sirie Godshalk
Molecular Biologist with over thirteen years of hands-on research experience, impactful writer and presenter, dynamic leader and enthusiastic team player with an eye for great ideas and a passion to move science in new directions seeks challenging opportunities beyond the bench.
Planaria is a flatworm that belongs to Tubelleria class and belongs to family Planaridae family (Agata & Watanabe 1999). Planarian has ability for regeneration of lost body parts. For this process of regeneration Planaria utilizes specialized neoblast cells. These neoblast cells are undifferentiated cells that are especially present in Planaria that aids in regeneration and restoration of lost organs (Goldman, 2014). Neoblasts present in Planaria are responsible for cell proliferation activities. Concentration and functional abilities of Neoblasts define the regenerative capabilities of Planaria (Reddien & Alvarado 2004). Concentration of neoblast results in the rate of regeneration of the organs it is found to be higher in the anterior head region when compared to the posterior tail region (Goldman, 2014). This is the primary hypothesis of the experiment. The concentration of neoblast is higher in anterior region hence regeneration will be higher in the anterior region when compared to the tail region (Goldman, 2014)
Nobel prize in Chemistry - 2015 (Background)Ashok Kumar
Each day our DNA is damaged by UV radiation, free radicals and other carcinogenic substances, but even without such external attacks, a DNA molecule is inherently unstable. Thousands of spontaneous changes to a cell’s genome occur on a daily basis. Furthermore, defects can also arise when DNA is copied during cell division, a process that occurs several million times every day in the human body.
The reason our genetic material does not disintegrate into complete chemical chaos is that a host of molecular systems continuously monitor and repair DNA. The Nobel Prize in Chemistry 2015 awards three pioneering scientists who have mapped how several of these repair systems function at a detailed molecular level.
In the early 1970s, scientists believed that DNA was an extremely stable molecule, but Tomas Lindahl demonstrated that DNA decays at a rate that ought to have made the development of life on Earth impossible. This insight led him to discover a molecular machinery, base excision repair, which constantly counteracts the collapse of our DNA.
Aziz Sancar has mapped nucleotide excision repair, the mechanism that cells use to repair UV damage to DNA. People born with defects in this repair system will develop skin cancer if they are exposed to sunlight. The cell also utilises nucleotide excision repair to correct defects caused by mutagenic substances, among other things.
Paul Modrich has demonstrated how the cell corrects errors that occur when DNA is replicated during cell division. This mechanism, mismatch repair, reduces the error frequency during DNA replication by about a thousandfold. Congenital defects in mismatch repair are known, for example, to cause a hereditary variant of colon cancer.
The Nobel Laureates in Chemistry 2015 have provided fundamental insights into how cells function, knowledge that can be used, for instance, in the development of new cancer treatments.
Student InstructionsIn this lab, you will determine how an inv.docxcpatriciarpatricia
Student Instructions
In this lab, you will determine how an invasive species—the zebra and quagga mussel—affects other species in the freshwater lake. Use the animation to help you come up with an answer to the following:
Why do you see increases and decreases in the invasive species population?
What are the implications associated with these alterations to the ecosystem as a whole?
The Effects of Zebra and Quagga Mussels Introduced into a Freshwater Lake
As you have learned, population dynamics are caused by the biotic potential of the population and the effects of environmental resistance. When there is minimal environmental resistance impacting a population, it will exhibit a population explosion. One reason for minimal resistance could be factors that no longer regulate a population (e.g., predator decline or resource increases). Another reason for a population explosion is the introduction of an invasive species.
Invasive species
are species foreign to an ecosystem and are not immediately regulated by the environmental restraints of the particular ecosystem that they invade. This in turn allows their populations to grow seemingly uncontrolled and to displace other indigenous populations. Examples of such an invasive species into North America are dreissenid mussels, commonly known as zebra and quagga mussels. Their introduction into the Great Lakes has caused economic hardship and a reorganization of the ecosystem. This has led, in part, to pollution-causing effects that can be linked to an alga known as
Cladophora
.
Ecosystems are webs of intricately balanced interactions, what happens when a new species is introduced that uses a disproportionate share of the ecosystem’s resources?
Using the M.U.S.E. link, review the background information and animation to complete your report.
Use the
Lab 5 worksheet
for assignment instructions and data collection.
Hi Everyone,
For your lab report this week, you will investigate the impact and spread of invasive species.
One of these described in your MUSE lab activity is the Zebra Mussel.
Just as you have done for the previous assignments, you will first review the background information, then collect the data. Your study will involve measurements showing how the mussels have spread and how they have impacted native species in an aquatic environment.
You will find that the number of mussels increases for 13 years and then begins to decrease. You are asked to explain this in your report.
Why do you see increases and decreases in the invasive species population?
What are the implications associated with these alterations to the ecosystem as a whole?
Use the notes in the animation to review the food chain in this ecosystem.
It will be very important to be able to describe which species are native and which are invasive. And to describe how even a native species, such as cladophora (algae) can result in ecological damage.
Next, review Chapter 4 of your eBook and refresh your memory on h.
La regeneración en planarias son metazoos bilaterados acelomados cuya asombrosa capacidad regenerativa ha sido ampliamente investigada debido a sus potenciales aplicaciones clínicas y biotecnológicas.
The Topic is Radioprotective Efficacy of RK-IP-006 in mammalian system. Experiments performed were Antioxidant assay, SDS-PAGE, Western Blot to check the effect against radiation of 9Gy.
Similar to The Variable Effects Of Gradients Of Exposure To Ultraviolet Light On Brown Planarians And Their Regeneration (20)
The Variable Effects Of Gradients Of Exposure To Ultraviolet Light On Brown Planarians And Their Regeneration
1. Alvarado, Alejandro Sánchez and Peter W. Reddien. FUNDAMENTALS OF PLANARIAN REGENERATION
Vol. 20: 725-757 (Volume publication date November 2004)
http://arjournals.annualreviews.org/doi/abs/10.1146/annurev.cellbio.20.010403.095114
Carolina Protozoa and Invertebrates Manual, 1977. http://web.esc20.net/livsci/pdf/Handouts/LMP-
13%20Planaria.pdf
The Columbia Electronic Encyclopedia, 6th ed. 2007, Columbia University Press.
"Planarian”. http://www.infoplease.com/ce6/sci/A0839279.html
Sparling, Brien. Ultraviolet radiation. http://www.nas.nasa.gov/About/Education/Ozone/radiation.html
Increased exposure to UV light appears to impair proper blastema formation and morphallaxis in Dugesia
tigrina. The number of fully regenerated planarians increased as the UV exposure decreased, which
demonstrated that UV has the ability to damage cell structures and impair the repair of cells. Amplified levels
of UV caused more planarians to die, which demonstrated that they could no longer regenerate as expected.
This is most likely due to cell damage at a nuclear level, which would prevent the proper coding for proteins
and lipids required to rebuild the planarian at the damaged site.
Dugesia tigrina is particularly sensitive to light and in its natural habitat is generally found in dark
environments, so it is possible that any exposure to light, including exposure to light during observations and
rotations, could have caused environmental stress to the planarians and increased their inability to fully
regenerate. The osmolarity of the distilled water that was used in the experiment may have been different from
the osmolarity found in the planarian’s natural environment, and this could have also affected the way in which
the planarians regenerated.
Future research on Dugesia tigrina may include larger sample sizes, which would enable more accurate
results to be recorded, and increase the accuracy of any statistical tests performed. A larger sample size
would better represent the population as a whole. An effort to reduce any other outside effects of regeneration,
such as reducing light sources other than the UV light source, may also help to yield more accurate results.
A Chi-square test was performed for the death rates of planarians to determine whether there was a
significant difference of regeneration depending on differing levels of UV radiation exposure. The calculated
value was determined to be 12.22, and at a degree of freedom of 5 and a probability of 5% the critical Chi-
square value was 11.07. This demonstrated that there was a significant difference in the rate of death of brown
planarians based on ultraviolet exposure. The data also indicated a trend that death rates increased as UV
exposure increased.
The percentages of planarians based on full regeneration, partial regeneration, and death demonstrate
that as UV exposure increases the fully regenerated planarians decrease in percent and the death rates of
planarians increase. Also, as UV exposure increased, the blastema failed to form correctly, and improper cell
division was found more frequently at the damaged site. One day following the cutting of the planarians the
blastema was beginning to form in the control and the 6-hour test subjects, as seen in Figures 2.A and 2.B, but
in the 12-hour subject the blastema region had failed to properly form, as seen in Figure 2.C. Planarians that
were exposed to 12 hours of exposure also demonstrated an incomplete blastema, which led to the pharynx
being ejected from the mouth, as in Figures 2.F and 2.H. In Figure 2.I the failure of the blastema to form
resulted in incomplete regeneration of the head of the planarian, as can be seen by the indentation in the
epithelium.
The goal of the experiment was to determine what effect exposure to variable levels of ultraviolet light
had on the regeneration of Dugesia tigrina, the brown planarian.
Planarians have the ability to regenerate completely into two individuals after being bilaterally cut. This
is due in part by neoblasts, groups of stem cells scattered throughout the organism’s tissue, and the process
of morphallaxis which remodels pre-existing tissue to restore symmetry and function. After sustaining injury,
somatic cells around the neoblasts at the blastema, a structure that forms at the wound site, are consumed to
complete the regeneration process. This accounts for the lost mass of the individuals while simultaneously
permitting their complete return to normal morphology (Alvarado and Reddien 2004).
The species used in the study, Dugesia tigrina (brown planarian), is a freshwater inhabiting free-living
flatworm native to the North American continent. Dugesia tigrina is of the Phylum: Platyhelminthes, Class:
Turbellaria, and Order: Tricladida. Known for their regenerative abilities, the species has been the subject of
scientific study for decades. Brown planarians are hermaphroditic and prefer to reproduce sexually, but are
capable of asexual reproduction by splitting into two individuals from the middle. The length of these animals
varies between 1/8th
of an inch and 1 inch. Brown planarians are scavenging carnivores that digest food
externally using their pharynx before withdrawing it into their gut. Two photoreceptors on the head aid
planarians in avoiding direct light ("Planarian,” 2007).
What we call ultraviolet light represents a wavelength band (400-150nm) of the electromagnetic
spectrum that has a frequency too high for the human eye to perceive but is weaker than X-rays (Sparling,
2001). Ultraviolet radiation can penetrate cells and directly damage the genetic material in the nucleus,
raising the possibility for mutation or growth disorders (cancer) to develop in addition to cell death. DNA
absorbs UV-B radiation, and the energy can dislodge nitrogen bases from their configuration or otherwise
break the strands. Ultraviolet light is generated by the sun, but is also artificially produced for use in tanning
beds and sterilizing laboratory equipment.
In the pilot experiments, attempts were made to introduce variable concentrations of Aloe Vera juice to
the water-filled fingerbowls that housed the planarians. A concentration gradient ranging from 50% to 5%
Aloe Vera juice resulted in 100% mortality of all subjects. A second attempt featured a concentration range
from 5% to 1%, with majority mortality. It was at this point that the Aloe Vera juice was removed from the
experiment’s design.
The UV exposure ranges were determined also within a pilot experiment, which demonstrated that after
18 or more hours of exposure, the subjects experienced 100% mortality. The upper threshold of 12 hours was
later the benchmark for exposure times in the final experiment.
Distilled water was added to each of the 6 ~100mL fingerbowls, nearly filling them. The planarians were
pulled out of the specimen jar via pipette and squirted onto a glass slide, where they were cut in half with a
scalpel. The severed head ends were placed in one bowl, while the tails were placed in another. This process
was repeated two more times, with a total of 10 planarian halves per fingerbowl. After labeling the bowls and
sealing the tops with clear polyethylene plastic wrap, they were placed on a rack in an environmental
chamber as in Figure 1.
The environmental chamber was prepped to hold a constant 19 degrees Celsius (Carolina, 1977). The
UV lamps were placed on the top rack, with another rack roughly six inches beneath it as a holding area for
the planarian bowls undergoing exposure. The chamber’s internal fluorescent lights were turned off, except
for the one on the bottom rack. A black garbage bag was wrapped around the rack to shield the exposed
planarians beneath from further exposure. The control specimen fingerbowl was placed on the bottom of the
chamber at experiment start. The remaining five bowls were placed on the holding rack. After a time passage
increment of one hour, a labeled specimen fingerbowl would be moved to the bottom of the chamber. This
was to be repeated at the intervals of 3, 6, 9, and 12 hours, until all specimen bowls were on the bottom.
Exposure was not repeated. On the first day (after exposure), as well as the fourth and seventh days,
photographs were taken of one specimen from each bowl to observe the extent of the subject’s regeneration.
Figure 1
Figure 2.CFigure 2.BFigure 2.A
Figure 2.G
Figure 2.FFigure 2.EFigure 2.D
Figure 2.IFigure 2.H
Figure 3