Scratchpads: community tools for taxonomists

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Invited talk at The Fourth International Conference on the Comparative Biology of the Monocotyledons- eTaxonomy session. August 15, 2008.

Economy & Finance Technology

Scratchpads
“community tools for taxonomists”

Vincent S. Smith
Simon D. Rycroft Dave Roberts

Macro scale taxonomy
The big picture of taxonomic research
Goal…
• Inventory the Earth’s species
• Document their relationships
• “Publish” these data

Data set…
• 1.8M described species (10M names)
• 300M pages (over last 250 years)
• 1.5-3B specimens

People…
• 4-6,000 scientists
• 30-40,000 amateurs
• Many more citizen scientists?

Micro scale taxonomy
The practice of taxonomic research
Parochial…
• Specialised
• Experts
• Fragmented distributed

Methodological…
• Communities of practice
• Hard to record update
• High output but low impact

Different…
• Data
• Interpretations
• Methods How do we integrate micro macro taxonomy?

Scratchpads: community tools for taxonomists

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Presentation given at ComBio2015. Abstract: Effectively addressing the environmental, land management and food production challenges of the 21st century requires exponential increases in our ability to understand and model ecosystem and agricultural processes. Lab approaches enable accurate measurement of the genetic and environmental basis of yield and fitness traits. In the field, we can fit models to predict how genotype/environment interactions scale to ecosystems. High-throughput phenomics in the lab can precisely phenotype thousands of plants under simulated climates. Full-genome sequencing and Genome-Wide Association Studies are used to dissect how traits emerge as an interaction between genes and environment. However, this high-dimensional data analysis is challenging and scaling such to the field is difficult. In the field we can use new monitoring technologies (UAVs, sensor networks, etc.) and cloud-based computation to monitor the environment at unprecedented resolutions. But our ability to collect data is rapidly outstripping capacity to visualize and analyzing these data. Lack of data standards and open-source software are a major limiting factor in our ability to effectively make use of complex research data. TraitCapture is an open-source high-throughput phenotyping system combining multispectral lighting and environmental controls simulating regional or climate-shifted growth conditions with real-time phenotyping of 2,000 plants/month. Plant sequence data and phenotypes are co-analyzed with GWAS to identify heritable traits. The Phenomic-Environmental-Sensing-Array (PESA) is a field-based system at the National Arboretum in Canberra, Australia that combines traditional and “NextGen” monitoring (weather, microclimate sensor networks, precision dendrometers, UAV time-lapse imaging, high-density LiDAR, phenocams and gigapixel-resolution time-lapse imaging. The site has biologically significant microclimate variation and a multi-year drought trial. Phenomic and environmental data, combined with tree genomic data, allow us to examine how environment and genetics shape phenotype and how the site microclimate changes with forest maturation. All software tools are web-based, open-source and work with both lab and field datasets.

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2. Elemental Economics - Mineral demand.pdf

Neal Brewster

After this second you should be able to: Explain the main determinants of demand for any mineral product, and their relative importance; recognise and explain how demand for any product is likely to change with economic activity; recognise and explain the roles of technology and relative prices in influencing demand; be able to explain the differences between the rates of growth of demand for different products.

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DOT TECH

There is no set date for when Pi coins will enter the market. However, the developers are working hard to get them released as soon as possible. Once they are available, users will be able to exchange other cryptocurrencies for Pi coins on designated exchanges. But for now the only way to sell your pi coins is through verified pi vendor. Here is the telegram contact of my personal pi vendor @Pi_vendor_247

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一比一原版(UoB毕业证)伯明翰大学毕业证如何办理

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Scratchpads: community tools for taxonomists

1. Scratchpads “community tools for taxonomists” Vincent S. Smith Simon D. Rycroft Dave Roberts

2. Macro scale taxonomy The big picture of taxonomic research Goal… • Inventory the Earth’s species • Document their relationships • “Publish” these data Data set… • 1.8M described species (10M names) • 300M pages (over last 250 years) • 1.5-3B specimens People… • 4-6,000 scientists • 30-40,000 amateurs • Many more citizen scientists?

3. Micro scale taxonomy The practice of taxonomic research Parochial… • Specialised • Experts • Fragmented distributed Methodological… • Communities of practice • Hard to record update • High output but low impact Different… • Data • Interpretations • Methods How do we integrate micro macro taxonomy?

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