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Genetical Algorithm(GA)
for Sparse CT Image Reconstruction.

Kazuma Nagafune
3.10.2013

1
Before talk of GA

Background of my study
Computed Tomography(CT)

A technique of reconstructing section image.
1. Project to object ALL directions
2. Caluculate for respective throughed quantity

3.10.2013

2
Problems
IF num of projections are few(Sparse CT)
→Can not reconstruct perfectly.

3.10.2013

3
Benefits
IF we can solve Sparse CT
→Get knowledges some structures of the object.

3.10.2013

4
Arrange problems
Projection needs ALL directions

3.10.2013

Obstacle might be there
=Sparse CT

5
Arrange problems
Projection needs ALL directions

Obstacle might be there.
=Sparse CT

We want to reconstruct
even if our data is lacked.

3.10.2013

6
Arrange problems
Projection needs ALL directions
Projection needs ALL directions

Obstacle might be there.
=Sparse CT

We want to reconstruct
even if our data is lacked.
Approach applying
Genetical Algorithm(GA)

3.10.2013

7
Genetical Algorithm(GA)
• Optimize Multi objective functions
• Exploitate using multi individuals
:= individuals
fi :=Objective function(i=1,2,…n)

f2

GS algorithm

f1

Minimize (Maximum)
Objective functions

Fllow chart

Minimum problem
3.10.2013

8
Genetical Algorithm(GA)
• Optimize Multi objective functions
• Exploitate using multi individuals
:= individuals
fi :=Objective function(i=1,2,…n)

f2

GS algorithm

f1

Minimize (Maximum)
Objective functions

Fllow chart

Minimum problem
3.10.2013

9
Genetical Algorithm(GA)
• Optimize Multi objective functions
• Exploitate using multi individuals

Explainf :=Objective function(i=1,2,…n)
the outline of GA
:= individuals
f
for Real number,
NSGA-II[Deb, 2002]
i

2

GS algorithm

GA is a one of the concenpt of
Evolutionary Multi-criterion Optimization(EMO).
f1

Minimize (Maximum)
Objective functions

Fllow chart

Minimum problem
3.10.2013

10
Initialization
• Make individuals
– They are ramdomly.

GS algorithm

f2

Fllow chart
f1
3.10.2013

11
Evaluation and Selection
• Individuals are
evaluated and selected
– Related limited conditions
– f1, f2 have different limited
conditions

GS algorithm

f2

Fllow chart
f1
3.10.2013

12
GA operator
• Brush up them using GAoperator
あ
あ
あ
あ
Mutation

GS algorithm

Parent1

Parent2

Child1

Child2

3.10.2013

Fllow chart

13
GA operator
• Genetical Algorithm(GA) operator
– Brush up them using GAoperator
あ
あ
あ
あ

In my study, I had cogitated and
Mutation
equipped GA-operator in Japan.
Parent1
Parent2
(But I’m not going to explain this in
this presentation).
Child1

3.10.2013

Child2

GS algorithm

Fllow chart

14
Crossover
• Crossover
selected individuals(parents)
– Set variety feautures to children
from parents’s.
GS algorithm

Parent1

Parent2

Fllow chart
Child1
3.10.2013

Child2

15
Mutation
• Some time mutate a few
individuals in the population
– Expect quiet new individual.
あ
あ
あ
あ

Mutation

GS algorithm

Fllow chart

3.10.2013

16
Evaluation and one aalgorithm
• Evaluate Individuals
• Apply one algorithm
• Checek for terminate
GS algorithm

Talk about my case of study
considering adobe explanation.

3.10.2013

Fllow chart

17
My case of study
Fourier
Transform
Real space

Frequency space

Use all pixels of frequency space for individual’s genes.
• One image has two individuals
– Real part and Imaginary part of frequency space)

• If 256 x 256pixels image, one individul has
65536 x 2 genes.
– Too much genes will have to be brushed up.
3.10.2013

18
Sparse CT is a inverse problem

To trace is
quiet difficult.
Because
given data is
very few.

Given data
Given data is very few.

Lacked data
Lacked data will not know even if GOD.

3.10.2013

19
Sparse CT is a inverse problem
Sparce CT (inverse problem) is inperfect problem,
so observer can not reconstruct original image perfectly.

Original image
3.10.2013

Reconstructed image
20
Numerical experience
・EMO algorithm:for realnumber,NSGA-II
・generation:30
・Original image:Phantom,Interior of watch
・Projections:8(phantom),20(watch)
・Each parameter (Phantom/LENA) :Table 1
Table 1. each parameter

Original image

10/20

Num of GS algorithm

Projections

10/20
3.10.2013

21
推定対象画像

Interior a watch
3.10.2013

Phantom
22
Result
Reconstructed result for 8 projections .

Previous work
3.10.2013

Supposed

Original
23
Result
Reconstructed result for 20 projections .

Previous work
3.10.2013

Supposed

Original
24
Summarize
The outcomes
• I have conducted on toys I have achieved
favorable results.
• I could show the efficacy utilizing GA-operator
Another cahllanges
• Include some noises from given data
• Utilize results another previous work

3.10.2013

25

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My research in 2013 in English

  • 1. Genetical Algorithm(GA) for Sparse CT Image Reconstruction. Kazuma Nagafune 3.10.2013 1
  • 2. Before talk of GA Background of my study Computed Tomography(CT) A technique of reconstructing section image. 1. Project to object ALL directions 2. Caluculate for respective throughed quantity 3.10.2013 2
  • 3. Problems IF num of projections are few(Sparse CT) →Can not reconstruct perfectly. 3.10.2013 3
  • 4. Benefits IF we can solve Sparse CT →Get knowledges some structures of the object. 3.10.2013 4
  • 5. Arrange problems Projection needs ALL directions 3.10.2013 Obstacle might be there =Sparse CT 5
  • 6. Arrange problems Projection needs ALL directions Obstacle might be there. =Sparse CT We want to reconstruct even if our data is lacked. 3.10.2013 6
  • 7. Arrange problems Projection needs ALL directions Projection needs ALL directions Obstacle might be there. =Sparse CT We want to reconstruct even if our data is lacked. Approach applying Genetical Algorithm(GA) 3.10.2013 7
  • 8. Genetical Algorithm(GA) • Optimize Multi objective functions • Exploitate using multi individuals := individuals fi :=Objective function(i=1,2,…n) f2 GS algorithm f1 Minimize (Maximum) Objective functions Fllow chart Minimum problem 3.10.2013 8
  • 9. Genetical Algorithm(GA) • Optimize Multi objective functions • Exploitate using multi individuals := individuals fi :=Objective function(i=1,2,…n) f2 GS algorithm f1 Minimize (Maximum) Objective functions Fllow chart Minimum problem 3.10.2013 9
  • 10. Genetical Algorithm(GA) • Optimize Multi objective functions • Exploitate using multi individuals Explainf :=Objective function(i=1,2,…n) the outline of GA := individuals f for Real number, NSGA-II[Deb, 2002] i 2 GS algorithm GA is a one of the concenpt of Evolutionary Multi-criterion Optimization(EMO). f1 Minimize (Maximum) Objective functions Fllow chart Minimum problem 3.10.2013 10
  • 11. Initialization • Make individuals – They are ramdomly. GS algorithm f2 Fllow chart f1 3.10.2013 11
  • 12. Evaluation and Selection • Individuals are evaluated and selected – Related limited conditions – f1, f2 have different limited conditions GS algorithm f2 Fllow chart f1 3.10.2013 12
  • 13. GA operator • Brush up them using GAoperator あ あ あ あ Mutation GS algorithm Parent1 Parent2 Child1 Child2 3.10.2013 Fllow chart 13
  • 14. GA operator • Genetical Algorithm(GA) operator – Brush up them using GAoperator あ あ あ あ In my study, I had cogitated and Mutation equipped GA-operator in Japan. Parent1 Parent2 (But I’m not going to explain this in this presentation). Child1 3.10.2013 Child2 GS algorithm Fllow chart 14
  • 15. Crossover • Crossover selected individuals(parents) – Set variety feautures to children from parents’s. GS algorithm Parent1 Parent2 Fllow chart Child1 3.10.2013 Child2 15
  • 16. Mutation • Some time mutate a few individuals in the population – Expect quiet new individual. あ あ あ あ Mutation GS algorithm Fllow chart 3.10.2013 16
  • 17. Evaluation and one aalgorithm • Evaluate Individuals • Apply one algorithm • Checek for terminate GS algorithm Talk about my case of study considering adobe explanation. 3.10.2013 Fllow chart 17
  • 18. My case of study Fourier Transform Real space Frequency space Use all pixels of frequency space for individual’s genes. • One image has two individuals – Real part and Imaginary part of frequency space) • If 256 x 256pixels image, one individul has 65536 x 2 genes. – Too much genes will have to be brushed up. 3.10.2013 18
  • 19. Sparse CT is a inverse problem To trace is quiet difficult. Because given data is very few. Given data Given data is very few. Lacked data Lacked data will not know even if GOD. 3.10.2013 19
  • 20. Sparse CT is a inverse problem Sparce CT (inverse problem) is inperfect problem, so observer can not reconstruct original image perfectly. Original image 3.10.2013 Reconstructed image 20
  • 21. Numerical experience ・EMO algorithm:for realnumber,NSGA-II ・generation:30 ・Original image:Phantom,Interior of watch ・Projections:8(phantom),20(watch) ・Each parameter (Phantom/LENA) :Table 1 Table 1. each parameter Original image 10/20 Num of GS algorithm Projections 10/20 3.10.2013 21
  • 23. Result Reconstructed result for 8 projections . Previous work 3.10.2013 Supposed Original 23
  • 24. Result Reconstructed result for 20 projections . Previous work 3.10.2013 Supposed Original 24
  • 25. Summarize The outcomes • I have conducted on toys I have achieved favorable results. • I could show the efficacy utilizing GA-operator Another cahllanges • Include some noises from given data • Utilize results another previous work 3.10.2013 25