MALDI - TOF MS: Where Mass Spectrometry Meets MicrobiologyICAR-CIFE
Abstract:
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS; MALDI biotyping) has turned a promising tool for the accurate, rapid, and economical identification of pathogens in the clinical diagnostics laboratory. MALDI-TOF measures the mass of molecules from a sample that has been embedded in a matrix by using a laser to ablate and desorb the molecules with minimal fragmentation. The mass spectrum is produced from the pattern (i.e., position and relative intensity) of detected m/z peaks, generating a distinct profile for a particular sample. The method is continuously being improved, and new applications for distinguishing strains, identifying metabolites or functional characteristics (e.g., antibiotic resistance), and detecting microbes directly in host samples have been developed. Adopting these methods in other disciplines than clinical diagnostics, for example, in agriculture, food safety and quality testing, or ecology, will open up new opportunities for diagnostics and research. Nowadays, MALDI-TOF MS technology is most widely used for discovering potential cancer biomarkers. MALDI-TOF MS presents advantages as it is easy to use the technique with high automation and throughput potential and high sensitivity. New fields of application for MALDI-TOF MS, such as Surface-enhanced laser desorption ionization time-of-flight (SELDI-TOF MS) and imaging mass spectrometry (IMS) are promising tools in the field of oncology.
This chapter contains sections titled:
Introduction
Fundamentals
Ionization Techniques
Electron Impact and Chemical Ionization
Atmospheric Pressure Ionization
Electrospray
Atmospheric Pressure Chemical Ionization
Photoionization
Multiple Ionization Source
Desorption Electrospray and Direct Analysis in Real Time
Matrix Assisted Laser Desorption Ionization
Mass Analyzers
Quadrupole Analyzers
Triple Quadrupole Mass Analyzer
Ion Trap Mass Spectrometry
Triple Quadrupole Linear Ion Trap
Time of Flight Mass Spectrometry
Fourier Transform Mass Spectrometry
Fourier Transform–Ion Cyclotron Resonance Mass Spectrometry
Orbitrap Mass Spectrometer
Ion Detectors
Practical Aspects and Applications in Bioanalysis
Introduction
Quantitative Analysis in Biological Matrices
Drug Metabolism
Analysis of Proteins
Perspectives
Common Definitions and Abbreviations
MALDI - TOF MS: Where Mass Spectrometry Meets MicrobiologyICAR-CIFE
Abstract:
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS; MALDI biotyping) has turned a promising tool for the accurate, rapid, and economical identification of pathogens in the clinical diagnostics laboratory. MALDI-TOF measures the mass of molecules from a sample that has been embedded in a matrix by using a laser to ablate and desorb the molecules with minimal fragmentation. The mass spectrum is produced from the pattern (i.e., position and relative intensity) of detected m/z peaks, generating a distinct profile for a particular sample. The method is continuously being improved, and new applications for distinguishing strains, identifying metabolites or functional characteristics (e.g., antibiotic resistance), and detecting microbes directly in host samples have been developed. Adopting these methods in other disciplines than clinical diagnostics, for example, in agriculture, food safety and quality testing, or ecology, will open up new opportunities for diagnostics and research. Nowadays, MALDI-TOF MS technology is most widely used for discovering potential cancer biomarkers. MALDI-TOF MS presents advantages as it is easy to use the technique with high automation and throughput potential and high sensitivity. New fields of application for MALDI-TOF MS, such as Surface-enhanced laser desorption ionization time-of-flight (SELDI-TOF MS) and imaging mass spectrometry (IMS) are promising tools in the field of oncology.
This chapter contains sections titled:
Introduction
Fundamentals
Ionization Techniques
Electron Impact and Chemical Ionization
Atmospheric Pressure Ionization
Electrospray
Atmospheric Pressure Chemical Ionization
Photoionization
Multiple Ionization Source
Desorption Electrospray and Direct Analysis in Real Time
Matrix Assisted Laser Desorption Ionization
Mass Analyzers
Quadrupole Analyzers
Triple Quadrupole Mass Analyzer
Ion Trap Mass Spectrometry
Triple Quadrupole Linear Ion Trap
Time of Flight Mass Spectrometry
Fourier Transform Mass Spectrometry
Fourier Transform–Ion Cyclotron Resonance Mass Spectrometry
Orbitrap Mass Spectrometer
Ion Detectors
Practical Aspects and Applications in Bioanalysis
Introduction
Quantitative Analysis in Biological Matrices
Drug Metabolism
Analysis of Proteins
Perspectives
Common Definitions and Abbreviations
Infrared microscopy, also referred to as FTIR microscopy, is ideal for identification of trace evidence in forensics and characterizing small particles in wide varieties of other fields. Combining the accurate material and chemical identification of FTIR spectroscopy with the ability to focus directly on micro-sized particles, makes this an indispensable technique. This presentation provides a couple of examples related to drug analysis and identification of explosives.
IR Spectrometers: Role in Analytical Chemistry and Materials Research | The L...The Lifesciences Magazine
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PCR
HPLC
Flow cytometry
Mass SPECTROMETRY
Minimally invasive technologies in PD
Conclusion
Lung Cancer: Artificial Intelligence, Synergetics, Complex System Analysis, S...Oleg Kshivets
RESULTS: Overall life span (LS) was 2252.1±1742.5 days and cumulative 5-year survival (5YS) reached 73.2%, 10 years – 64.8%, 20 years – 42.5%. 513 LCP lived more than 5 years (LS=3124.6±1525.6 days), 148 LCP – more than 10 years (LS=5054.4±1504.1 days).199 LCP died because of LC (LS=562.7±374.5 days). 5YS of LCP after bi/lobectomies was significantly superior in comparison with LCP after pneumonectomies (78.1% vs.63.7%, P=0.00001 by log-rank test). AT significantly improved 5YS (66.3% vs. 34.8%) (P=0.00000 by log-rank test) only for LCP with N1-2. Cox modeling displayed that 5YS of LCP significantly depended on: phase transition (PT) early-invasive LC in terms of synergetics, PT N0—N12, cell ratio factors (ratio between cancer cells- CC and blood cells subpopulations), G1-3, histology, glucose, AT, blood cell circuit, prothrombin index, heparin tolerance, recalcification time (P=0.000-0.038). Neural networks, genetic algorithm selection and bootstrap simulation revealed relationships between 5YS and PT early-invasive LC (rank=1), PT N0—N12 (rank=2), thrombocytes/CC (3), erythrocytes/CC (4), eosinophils/CC (5), healthy cells/CC (6), lymphocytes/CC (7), segmented neutrophils/CC (8), stick neutrophils/CC (9), monocytes/CC (10); leucocytes/CC (11). Correct prediction of 5YS was 100% by neural networks computing (area under ROC curve=1.0; error=0.0).
CONCLUSIONS: 5YS of LCP after radical procedures significantly depended on: 1) PT early-invasive cancer; 2) PT N0--N12; 3) cell ratio factors; 4) blood cell circuit; 5) biochemical factors; 6) hemostasis system; 7) AT; 8) LC characteristics; 9) LC cell dynamics; 10) surgery type: lobectomy/pneumonectomy; 11) anthropometric data. Optimal diagnosis and treatment strategies for LC are: 1) screening and early detection of LC; 2) availability of experienced thoracic surgeons because of complexity of radical procedures; 3) aggressive en block surgery and adequate lymph node dissection for completeness; 4) precise prediction; 5) adjuvant chemoimmunoradiotherapy for LCP with unfavorable prognosis.
The Gram stain is a fundamental technique in microbiology used to classify bacteria based on their cell wall structure. It provides a quick and simple method to distinguish between Gram-positive and Gram-negative bacteria, which have different susceptibilities to antibiotics
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Infrared microscopy, also referred to as FTIR microscopy, is ideal for identification of trace evidence in forensics and characterizing small particles in wide varieties of other fields. Combining the accurate material and chemical identification of FTIR spectroscopy with the ability to focus directly on micro-sized particles, makes this an indispensable technique. This presentation provides a couple of examples related to drug analysis and identification of explosives.
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Recent FTIR: 76000 model with working, specification and Application in pharmacy.
1. Presented by
Md Tauquir Alam
Department of Pharmaceutical Chemistry
Faculty of Pharmacy
Northern Border University
2. OUTLINE
WHAT IS FTIR?
FTIR PRINCIPAL
PROPERTIES OF FTIR
SPECIFICATION
SOP (OPRATING PROCEDURE)
(HOW THE INSTRUMENT WORKS)
HOW SOFTWARE WORKS
APPLICATION OF FTIR IN PHARAMACY
3. It is the technique used to obtain spectrum of absorption, emission The main aim is to
measure the amount of light absorbed by a sample at each wavelength
FTIR has application both in Qualitative and Quantitative. Analysis It is a non-destructive,
time saving method, can detect range of functional groups and is sensitive to change in
molecular structure.
Infrared spectroscopy is a powerful spectroscopy technique and can utilized for both
quantitative and qualitative analysis, as the output received is a detailed information
about the chemical composition of the substance in the IR
spectrum.
4. FTIR spectroscopy is an appealing technology for the food industry because
simple, rapid, and non-destructive measurements of chemical and physical
component scan be obtained (Saona et al. 2011).
Advances in FTIR instrumentation combined with the development of powerful
multivariate data analysis methods make this technology ideal for large volume,
rapid screening and characterization of minor food components down to parts per
billion (ppb) levels (Saona et al. 2011
7. PRINCIPLE
In any molecule , atoms or groups of atoms are connected by bonds which are similar
to springs and not rigid in nature.
Bonded atoms having different strengths due to different masses. Absorption of IR
energy will cause vibrational changes in molecule and a peak will be observed, when
Conditions to obtain IR spectrum
1) Selection rule for IR spectroscopy: Dipole moment of bonds should change
during vibration.
2) When Applied infrared frequency = Natural frequency of
vibration
3) When covalent bonds are polar in nature
When sample obeys these conditions, then it gets vibrated
by absorbing radiation and gives IR spectrum.
22. APPLICATIONS OF FTIR IN PHARMACY
Quality Control
Infrared spectroscopy is an ideal analytical tool for both routine quality control (QC)
analysis to verify if materials meet specification, and analytical investigations to identify
the causes of failures when they occur.
Determine impurities in raw materials (to ensure quality products).
2. For Quality Control checks; to determine the % of required product.
3. Identification of materials made in industrial research labs,
or materials of competitors.
E.g.: Impurity in bees wax (with petroleum wax)
24. Determination of Molecular Structure
― Used along with other spectroscopic techniques.
― Identification is done based on position of
absorption bands in the spectrum.
― Eg.: C=O at 1717 cm-1.
― Absence of band of a particular group indicates absence of that group in the compd.
Studying Progress of Reactions
― Observing rate of disappearance of characteristic absorption band in reactants; or
― Rate of increasing absorption bands in products of a particular product.
― Eg.: O—H = 3600-3650 cm-1 C=O = 1680-1760 cm-1
25. Detection of Impurities
― Determined by comparing sample spectrum with the spectrum of pure reference
compound. Eg.: ketone impurity in alcohols.
― Detection is favoured when impurity possess a strong band in IR region where the main
substance do not possess a band.
26. Isomerism in Organic Chemistry
(i) Geometrical Isomerism: trans isomers give a simpler spectrum than cis due to symmetry.
(ii) Conformers (Rotational Isomers): Identified with the help of high resolution IR
spectrometers. E.g.: Ethanol
normal OH – 3636 cm-1 , weak band – 3622 cm-1
27.
28. Pharmaceuticals:
Pharmaceutical laboratories face strong regulatory requirements and market pressures at every
step along the product development pipeline. FTIR is an excellent technique for pharmaceutical
analysis because it is easy to use, sensitive, fast, and helps ensure regulatory compliance through
validation protocols.
Applications include:
Basic drug research and structural elucidation
Formulation development and validation
Quality control processes for incoming and outgoing materials
Packaging testing
29. Forensics:
International drug enforcement agencies, police departments, and customs laboratories
rely on spectroscopy to quickly identify illegal drugs, crime scene evidence, banned
materials, and counterfeit goods. FTIR, FT-Raman, GC-IR, and IR microscopy
techniques build a complete understanding of evidence samples and allow forensic
scientists to confidently give expert testimony in court. These techniques can provide
fast, easy and consistent analysis for:
Seized drugs: controlled substances and cutting agents
Clandestine labs: chemical evaluation
Hit and run: paint and materials
Textile identification: fibers, coatings, and residues
30. Environment:
Infrared spectroscopy is a valuable technique for monitoring air quality, testing water
quality, and analyzing soil to address environmental and health concerns caused by
increasing pollution levels. The technique offers a “green” method of testing and fast,
accurate results with the added benefit of saving money on the cost of consumables.
Other Applications:
1. Determination of unknown contaminants in industry using FTIR.
2. Determination of cell walls of mutant & wild type plant varieties using FTIR.
3. Biomedical studies of human hair to identify disease states (recent approach).
4. Identify odour & taste components of food.
5. Determine atmospheric pollutants from atmosphere itself.