Puget Puget sound restoration 424 final

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Puget Sound Restoration
Ethan Davies
Jessica Ketchum
Karris Roland
Will Wier

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TABLE OF CONTENTS
1. Introduction to Sounds
1.1 What is Puget Sound?
1.2 Components of the Project
a. Beaches
b. Bluffs
c. Estuaries
d. Deltas
2. Introduction to Estuaries
2.1 Definition
2.2 Productivity
2.3 Issues with Degradation and Pollutants
2.4 Restoration
3. Introduction to Deltas
3.1 Definition
3.2 Components
3.3 Importance of Flow Rates
3.4 Decreasing the Gradient
3.5 Types of Deltas
3.6 Restoration Practices
4. Introduction to Beaches and Barrier Embayments
4.1 Definition
4.2 Productivity
4.3 Issues with Sediment Supply and Ecological Processes
4.4 Forage Fish
4.5 Restoration Practices
6. Nooksack Delta
6.1 Definition
6.2 Layout
6.3 Specific Goals and Key Design Elements
6.4 Specific Improved Conditions
6.5 Length of Project and Cost
6.6 Rail, Roadway and Bridge Projects
6.7 Sea Level
6.8 Public Outreach
7. Puget Sound Estuaries
7.1 Estuary Introduction
7.2 Processes Restored
7.3 Conditions Improved
7.4 Lilliwaup Causeway Replacement and Estuary Restoration
7.4.1 Lilliwaup Introduction
7.4.2 History
7.4.3 Surrounding Environment
7.4.4 Restoration Design
7.4.4.1 Overview
7.4.4.2 Primary Management

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7.4.4.3 Additional Management
7.4.4.4 Considerations
7.4.5 Expected Outcomes
7.4.6 Uncertainties
7.5 Figures

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INTRODUCTION TO SOUNDS AND PUGET
A sound is a narrow sea of water between two bodies of land. Puget Sound is a
sound located in the state of Washington in the US. The sound is an inlet for the Pacific
Ocean and is a very complex coastal system, with several rivers and streams
interconnecting basins, and also with connections to the Strait of Juan de Fuca. Puget
Sound is approximately 100 miles long and averages a depth of 205 ft. Puget Sound is
defined not just as the water bodies but also the regions of land encompassing the sound.
Puget Sound Nearshore Ecosystem Restoration Project (PSNERP) has identified
36 potential nearshore restoration projects. The conceptual Engineering Design Report
was created to assess the costs and benefits of each of the 36 components. Along with
providing a general conceptual design of the planned restoration, it is also a useful
document since it allows the US Army Corps of Engineers to assess which sites best
match their own restoration programs. It is still being decided which programs are better
executed at the local, state, and federal levels.
The sound breaks down restoration into 3 main components: beaches and bluffs,
deltas, and estuaries. An estuary is a part coastal body of water, usually brackish,
meaning it’s a mix of salty and fresh water, with connections of rivers and streams and
also a pathway to the open ocean. Estuaries are unique in that they experience both river
and ocean conditions. Influences such as salt concentration, tides and waves are all due
to the sea component and influences such as flow rates, and nutrient/sediment flows are
due to the river system attributes. Because of these conditions, estuaries have “the best of
both worlds” and are one of the most productive ecosystems in the world. Other names
for estuaries are used interchangeably such as bays, harbors, or lagoons, but all vary a tad
in their actual definition.
INTRODUCTION TO ESTUARIES
Since banks of estuaries are some of the most productive habitats in the world, it’s
no surprise that it’s also one of the most populated locations also. According to the US
EPA, approximately 60% of the world’s populations live along estuaries and
coastlines. Because of heavy population, estuaries are also some of the most degraded
areas. Issues with soil erosion caused by poor farming practices, overgrazing, and
deforestation are one of the main concerns. Several other issues also exist. Overfishing
leads to a myriad of reactions in the ecosystem, excessive nutrients due to animal
production lead to eutrophication. Pollutants ranging from heavy metals to dangerous
chemical compounds such as BPA also pose a serious problem to the health of the
estuaries within the sound and the whole geographical area of Puget Sound itself.
To get a better idea of the process of restoration on a project this big, the main
components of the Puget Sound project: beaches and bluffs, estuaries, and deltas have
been selected and then magnified to include one specific beach, bluff, estuary and delta.

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INTRODUCTION TO DELTAS
A river delta is a geological formation that is similar and often a component of an
estuary. A river delta is a region that forms where the mouth of a river flows into the
ocean, estuary, lake or other water body. This differs from an estuary in that the estuary
is more the mixed brackish water bodies and the land surrounding it, while a river delta
focuses more on the landform itself. The delta is made up of deposits of sediment carried
out to the water body form the river over long periods of time. One factor to note is that
the flow rate of water must be slow enough not to sweep the sediments away since the
buildup of these sediments is the main characteristic of a delta. Other factors necessary
to the creation of deltas is that the river must have enough sediment as a source to carry
through its path and leave for deposition further down. When the delta reaches the
water body from the river, the width of water is then expanded. As the width expands,
the flow of water is again slowed, making it more difficult to transport sediment, and
slowing the process down. What results is that the sediments drop out of the flow and are
deposited. This delta formation that expands as it pushes out over time is sometimes
referred to as a lobe. As this lobe further develops, it lowers the river channel gradient
since the elevation remains constant but the river channel lengthens.
As this gradient or slow of the river channel decreases, it starts to become
unbalanced. This system becomes unbalanced for two main reasons. One, gravity is the
driving force for the water and a steeper slope is usually more stable, especially when a
big rain event occurs. And second, as the slope of the river channel is decreased, so it the
shear stress on the river bed. When the shear stress on the river bed is reduced, the
sediments will deposit more quickly and increase the bed elevation, causing a spill of
water from a rain event to be more likely. If an event like this occurs, usually a network
of channels begins formation.
Three main categories of deltas exits: wave-dominated, tide-dominated, and
Gilbert deltas. In the first category, wave-dominated, the waves are the main controller of
the deltas shape, and the deposits of sediments are deflected along the coastline. Tide-dominated
deltas tend to have more main distributaries than wave-dominated scenarios
since in the wave situation when the new channels are formed; the old ones are usually
abandoned. Lastly, Gilbert deltas form more course sediments and are not as muddy,
soft, and sloping.
NOOKSACK DELTA
The Nooksack River Delta is a very complex and intricate system that
incorporates both the Nooksack and Lummi River estuaries, both major water systems of
Whatcom County. Three main problems this delta faces are the quality of water,
floodplain habitats and also nearshore habitats. What has happened is that the Lummi
River used to carry a substantial portion of water to the west of the Lummi River,
providing the Lummi Peninsula and Bay with plenty of resources. However, due to the
removal of many large trees, draining, diking, and construction, the flow has been almost
entirely redirected to the east and now flows into the Nooksack River out into Bellingham
Bay. This redirection of water allows a lot of productivity of the east side, but the west
now lacks water and habitats and populations are suffering. The west side of the delta is
also exposed to tidal flows since it has been separated by a constructed levee
system. The main goals of the restoration project at Nooksack are removal or setting

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back of the levees obstructing tidal flow to allow more natural flows of river channels
and floodplains. The site is comprised of several thousand acres so this presents no easy
task. Essentially, the project aims to restore the site to its pre-disturbed condition.
Specific goals for processes to restore include restoring a more natural process to
the following: the erosion of beaches, formation of tidal zones and channels in estuaries,
the flow of freshwater in rivers and streams, movement of saltwater in tidal channel in
estuaries, and lastly, the buildup and retention of organic material from plants and marine
life (PSNERP, 2012). Specific conditions improved would include the following: a
reestablished large river delta providing for threatened species of marine life such as
juvenile salmon (Chinook) that would increase their survival and support improving this
population, re-establishing intertidal and sub tidal areas so to boost kelp and eelgrass
growth (creating food and habitat for fish, birds and marine species), improved
connectivity of nearshore and neighboring land, increased area, length, and intricacy of
shoreline, improved elasticity to the shoreline from effects such as changing sea level and
increasing frequency of storms.
The total projected cost for this project is 414.6 million dollars. The specific
elements would remove part of the levee along both Nooksack River banks, and setting
back the levees on the North Red River Road and at entrance of the Nooksack
estuary. The Lummi River channel would also be dredged and graded to re-join it to the
water flowing form the Nooksack River. Old ditches made for past agriculture would be
filled in and tidal channel would be recreated. The raising of several roads onto bridges
would also tidal water to flow in and out of the delta. This project would demand for
some residents to relocate.
NOOKSACK DELTA’S NATURAL ENVIRONMENT
The Nooksack delta drains approximately 825 square miles from Mount Baker to
Bellingham Bay. It is composed of three major forks that join as they exit the Cascade
Mountain foothills. The Nooksack River formerly was divided into channels in the
delta; however, the main channel is now directed to flow east of the Lummi Peninsula,
and is inhibited by levees for much of its span Freshwater flow into the Lummi
River distributary channel doesn’t really exist except for flow through a culvert. The
Lummi River has full tidal access but is essentially a blind channel since it’s separated
from the main channel, the Nooksack River, by a levee, and only receives intermittent
flow. The Lummi River has a freshwater intake from Shell Creek, which drains sections
of the City of Ferndale to the north. Most of the former delta wetlands are separated from
tides by a levee or dike system, running along the Lummi River and in other areas. Forest
cover has been almost entirely removed from the western delta. Riparian forest needs to
be reestablished. The Nooksack River system supports nine species of salmon IDs,
including three listed under the Endangered Species Act: early Chinook, steelhead, and
bull trout. Only three of the 25 salmonid stocks are currently considered healthy (Smith
2002).

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HUMAN ENVIRONMENT
Humans have influenced the area greatly and contributed to degradation in the
following ways:
 Establishing a major road network, with major roads including Slater Road,
Ferndale Road, North Red River Road, South Red River Road, Marine Drive,
Kwina Road, Hillaire Road, and Haxton Way.
 Land conversion to agriculture (field crops, poplar plantations, and pasture).
 Low-density residential development.
 Levees constructed along the mainstay Nooksack River and Lummi River.
 A seawall and berm system in the west delta.
 Tide gates installed on channels and the Lummi River in the west delta.
 Land use conversion to commercial (gas station/minimart, Silver Reef Hotel,
Casino, Spa).
The changes are altered land cover throughout the majority of the Nooksack
delta. Tides and fluvial processes (flow and sediment related) that are blocked and
eliminated, respectively; and altered sediment delivery to river floodplains and the
nearshore.
CONCEPTUAL DESIGN (10%)
Typical design plans for this type of project to through many stages. The
conceptual design is sometimes deemed as the ten percent design. This stage involves
identifying the sites for restoration and coming up with action plans. Then the next step
is to assess the cost, benefits and feasibility. The full restoration objective for River
Deltas Ecosystem is to remove dominant stressors to a degree that allows undegraded
tidal flows and freshwater inputs necessary to support a full range of delta ecosystem
processes, focusing on the reestablishment of complex wetlands that include oligohaline
transition and tidal freshwater components. This will be accomplished by berm or dike
removal and also in combination with river channel restoration.

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RAIL, ROADWAYS, AND BRIDGES STANDARDS
For all suggested modification, coordination would have to be conducted with
Railway providers, including Burlington Northern Santa Fe. Using general standards
outlined by the CDT, methods for establishing bridge elevations will be analyzed.
WATERWAYS
It will be important to carefully track the amount of disturbance by construction
when Construction practices such as pile driving, excavation, and dewatering have
impacts to the environment and will need to be fully evaluated. Mandates and
regulations set by the federal and state governments are strict when pertaining to
construction done under the ordinary high water mark. The purpose of these regulations
is to make sure in-water construction activity doesn’t disturb periods of salmon migration
and fish spawning.

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PUBLIC OUTREACH AND PROPERTY ACQUISITION
The public is a very important piece of the completion of this project. The
public’s needs and concerns can be meet with education and fair compensation of
property, but many other issues arise. Some of the proposed modifications occur on
public lands such as recreational waterfowl hunting areas, and other public
resources. Some commercial fishing and shellfish production and harvest are also
located on this land. Dam removals required careful accessing of water rights and other
amenities that have large parties interests involved.
Embayments
Another major issue affecting the welfare of the Puget Sound nearshore is the
degradation of the coastal embayments. An embayment is “an indentation of the
shoreline larger in size than a cove but smaller than a gulf.” Embayments are broken
down into four primary shoreforms: Open coastal inlets, barrier estuaries, barrier lagoons,
and closed lagoons and marshes. An open coastal inlet is a small inlet protected from
wave action by their small size or shape, but not significantly enclosed by a barrier beach.
Barrier estuaries are tidal inlets largely isolated by a barrier beach and with a significant
input of freshwater from a stream or upland drainage. Barrier lagoons are tidal inlets
largely isolated by a barrier beach and with no significant input of freshwater. Finally,
closed lagoons and marshes are back-barrier wetlands with no surface connection to
Puget Sound. These components are varyingly comprised of stream deltas, tide flats, salt
marsh, channels, tidal deltas, and ponds or lakes. A single embayment could include
portions of more than one embayment shoreform.(PSNERP 2012)
Historically, coastal embayments, including open coastal inlets, barrier estuaries
and barrier lagoons, accounted for 1,100 km of shoreline in Puget Sound, now they make
up a mere 600 km. Of the 173 open coastal inlets that once existed only 16 exist today, as
well as 61 of the 240 barrier estuaries, and 80 of the 222 barrier lagoons that previously
existed. The embayments that were separate from the Puget Sound shoreline (closed
lagoons and marshes) were reduced from 2.6 km of shoreline to 1.6 km, making them the
rarest shoreform in Puget Sound. Out of the 249 previously existing closed lagoons and
marshes, 138 have been lost. Overall, there are 35% fewer of all four of the embayment
shoreforms than historic records previously indicated. (PSNERP 2011)

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Figure 1: Historic vs Current shoreline lengths of Embayment Shoreforms
The Puget Sound Nearshore Restoration Project has developed a set of metrics to
define the measurable conditions of embayments to determine embayment quality and
necessity of management measures. The potential metrics of embayments measure the
embayment shoreline length, the vegetated wetland area and the embayment density
selected areas. They also measure the degradation metrics of embayments by the loss of
embayment length, loss of wetland area, tidal flow degradation, sediment supply
degradation, and nearshore imperviousness. Risk metrics are determined by jetty
influence and future nearshore development involving embayment shoreforms. The
processes targeted for quality are sediment supply and tidal flow. Simenstad et al. (2011)
stated, “The processes of sediment transport, erosion and accretion of sediments, detritus
recruitment and retention, solar incidence, and tidal channel formation and maintenance
are anticipated to be critical to the full restoration of embayment ecosystem services, and
are most likely to be in operation where sediment supply and tidal flow are
unconstrained.” They state that topographic restoration, dike/berm removal or
modification, armor removal, groin removal, revegetation, and overwater structure
removal may help restore the sediment supply and tidal flow processes back to natural
levels.
Removing or modifying dikes and berms would help restore tidal flow in some
settings, whereas topographic restoration is necessary for repairing embayments that have
been filled for development. Armor removal and groin removal are among primary
management measures and would help in a similar manner as they would with beach
restoration. Removing groins and armor would help to restore and transport sediment to
barrier beaches and embayments. Revegetation would help to prevent erosion as well as
to improve water quality by filtering away runoff into embayments. Removing overwater

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structures and roads would help to reopen up channels for natural sediment transport as
well as reduce embayment exposure to runoff.
The tidal barriers and wetland filling practices disrupt several of the essential
functions of the embayments and deltas. They impact important processes like sediment
transport, tidal flow, tidal channel formation, distributary channel migration, detritus
import and export, as well as the exchange of aquatic organisms. These impacted
processes effect the overall composition of the embayments, making them less capable of
supporting the native fauna, as well as diminishing the base of the local food web. The
change in sediment transport and erosion causes the surface elevation of marshes to
subside making the nearshore less resilient to rises in sea level, which could potentially
lead to further damage.
Embayments are highly valued for several nearshore ecological processes, largely
for their role in providing habitats for native shellfish, eelgrass and kelpbeds, shorebirds,
and most notably salmon. The Chinook salmon will rear their young in estuarine

embayments away from the river where they were spawned. The Chinook salmon will
also use pocket estuaries in Skagit Bay in the Whidbey sub-basin to hide away from
predators and feed. These salmon are considered to be an integral part of the culture in
the Puget Sound area as well as a major link on the food chain of the area. Loss of
embayments has reduced the resilience of the salmon population and has led to their
listing a threatened species in the area. The Chinook salmon heavily rely on the well
being of pocket estuaries, particularly those that are closet to the large deltas. The pocket
estuaries provide a habitat for a faster growing environment due to their relative warmth,
high detritus retention, and lower predation as compared to adjacent nearshore or
offshore waters.
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Figure 2: Embayment processes, structure and functions
Several of the embayment restoration strategies proposed are likely not to be
completely accomplished as suggested by the Puget Sound Nearshore Restoration project
has suggested. Property ownership and other conflicting land uses prevent the full
restoration degraded embayments, so they established a system outlining necessary
actions for a suitable partial restoration of embayment ecosystem services. The PSNERP
hopes that despite the forces restricting the full restoration of Puget Sound if these partial
restoration measures can be implemented, the important ecological services that
embayments provide should still function well enough to meet these conditions.
1. Ecosystem processes are fully restored within a partial footprint, including
the unconstrained tidal flows necessary to support a full range of
embayment ecosystem processes.

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2. The system has redundant representation of the full range of embayment
ecosystem components including stream delta or ponds (where historically
present), tidal flats, salt marsh, channels, tidal delta, beach berm, beach
face, and low tide terrace where historically present.
3. The partially restored system is formed of a contiguous large patch that is
well connected to adjacent terrestrial and marine landscapes.
4. The wetland system is internally connected through a network of tidal
channels that allow for the unconstrained movement of organisms, water,
and sediments.
5. The landward edges and freshwater inputs into the partial embayment
ecosystem are managed to provide riparian functions and to protect the
quantity and quality of freshwater inputs from surrounding land use
impacts.
The restoration of embayments is a major concern for all of the sub-basins. But
the South Puget Sound, South Central Puget Sound, Hood Canal, and Whidbey sub-basins
have especially high losses of the embayment shoreforms. There are proposals put
forth to restore the shoreforms to their natural shape in each of these regions. The sub-basins
have all been surveyed to analyze the presence of historic and current embayment
shoreforms.
Barrier embayment sites by sub-basin.
In Hood Canal, The Point Whitney Lagoon has experienced some significant
development that has damaged the lagoon’s capacity to serve its necessary natural
functions. Developers at the point Whitney Lagoon installed rock armoring, dikes,
asphalt and gravel parking lots, as well as buildings and pavement to form 2 unnatural
ponds from the lagoon in the 6-acre area. By getting rid of these developments PSNERP
hopes to restore several processes that the lagoon previously served. They would restore
the movement of sand and gravel along shorelines, the natural erosion and accretion of
beaches, accumulation and retention of organic material from plants and aquatic animals,

as well restore the natural exposure to wind and wave action. In restoring these processes,
they hope to restore the Chinook salmon habitat, improve the connectivity between the
nearshore and the adjacent uplands, and to improve the area, length, and complexity of
the shoreline. The shoreline would be better suited to respond to changes such as rises in
sea level and increasing storm events. They would also improve public access to the
shoreline for recreation.
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Point Whitney Lagoon Restoration objectives

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Puget Sound Restoration Estuaries
I. Estuary introduction
Estuaries provide a key role to the Puget Sound system. Estuaries are the coastal
waters where an incoming freshwater source meets a saltwater body. They tend to be
partially enclosed, therefore making them ideal places for fish and other organisms to
raise their young. Without estuaries many fish species would suffer as a result of their
eggs and young not being protected, making them vulnerable to predators. The many
estuaries in Puget Sound have been modified and don’t provide as much shelter for young
fish as they used to. These estuaries need to be restored to their original condition in
order for the fish in the region to thrive as well as they once did. A restored estuary
would lead to a restored fishery, which would in turn lead to a stronger economy as many
towns along the Puget Sound coast rely on fishing.
II. Processes Restored
The Puget Sound Nearshore Ecosystem Restoration Project emphasizes several
aspects of restoration for estuaries in order to make the area more like it was before
human intervention altered the Puget Sound natural processes. For starters, the natural
formation of tidal channels in estuaries should be restored. Agricultural ditches have
significantly altered the way that tidal channels form and the wildlife that use these tidal
channels have been negatively affected. Also, the flow of freshwater streams into the
estuaries and saltwater into the tidal channels should become unrestricted as it naturally
was. Dikes and berms for bridges have restricted this natural flow of the water in the
estuaries. Removing these or creating a way for the water to flow better will help create
an unrestricted flow of water as well as an unrestricted movement and migration of fish
and wildlife. This will also help in the accumulation and retention of organic material
from plants and aquatic animals. Along the coastlines, the major goal is to restore the
shore to the natural exposure to wind and wave action.
III. Conditions Improved
Restoring the natural processes of Puget Sound will help greatly in improving
many conditions of the ecosystem. Historical tidal flat habitats would be re-established.
These areas are important foraging and resting areas for shorebirds and marine birds like
Dunlin and the Great Blue Heron. Intertidal and shallow subtidal areas would also be
restored which would encourage the growth of kelp and eelgrass, in turn improving the
conditions for fish, birds and other marine species. The area, length, and complexity of
the shoreline would be increased as the Puget Sound area was originally. This would also
improve the resiliency of the shoreline to respond to changes in the environment such as
rising sea levels and a growing number of storms. Improvements would also be made for
the coastal embayments and large river deltas that provide a nursery habitat for species of
fish, including the threatened species of Chinook salmon. Another positive result would
also include intertidal and subtidal areas that are used recreationally and culturally
important shellfish such as oysters, clams, and mussels. All of these improved conditions
will result in an improved quality of the water flowing through the estuary.

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IV. Lilliwaup Causeway Replacement and Estuary Restoration
a. Lilliwaup Introduction
The Lilliwaup estuary is currently obstructed by a roadway, changing the
hydraulics, sediment transport, and geomorphology from the natural processes.
Removing this causeway will restore tidal connectivity in the estuary. The proposed
alternative to the current roadway that disrupts the tidal flow is a bridge that spans the
entire delta and removing the earthen fill that partially blocked the estuary.
Lilliwaup Creek is the largest creek in the southern part of the Hamma Hamma
watershed. It provides a significant influent flow to wetlands and lakes and habitat for
salmonids. Lilliwaup Falls farther upstream prevents anadromous fish from swimming
far upstream. Most of the watershed is publically owned land with some residential
homes and farms situated near the mouth of the creek. A small hatchery is located on
Lilliwaup Creek where summer chum entering the creek are spawned and the offspring
are released. A small privately owned hydroelectric power plant is located below
Lilliwaup Falls.
b. History
The earliest records of the channel (a 1884 T-sheet) show a few small marsh
islands at the upstream end of the estuary and two tidal channels at the mouth of the
creek. No roadway or any sign of settlement is shown other than a fenced grassland north
of the creek. A 1925 WSDOT roadway and bridge drawing is the first historical record of
a road crossing the creek. It shows an existing “pile trestle” just east of the new road as
well. Three distributary channels for Lilliwaup Creek are also shown: the South Fork
South, the South Fork North, and the North Fork. The new bridge was aligned near the
South Fork North channel and the road embankment blocked the other two channels.
There were also plans to fill and develop parts of Lilliwaup Bay. A wharf of about 300
feet extended into the bay east of the proposed roadway on the south bank. Tides reached
up to Lilliwaup Falls prior to the aggradation of the streambed.
c. Surrounding Environment
Upstream of the bridge that Highway 101 crosses the estuary on, two definite
channels flow with the eastern one being the main channel. There is some braiding in the
mudflats and upstream of the bridge, and under the bridge, the channel deepens
suggesting that the flow has been constricted. Just after the channel goes under the
highway 101 bridge, it widens out into a large embayment before entering a large section
of Puget Sound.
The watershed for Lilliwaup Creek is small and narrow due to the steep terrain
surrounding it. There is a weir-like concrete structure that has been placed near the
waterfall and a sluiceway enters the canyon from the northeast. The sluiceway was going
to be for a power plant, but several structural failures upstream prevented the plant from
being built. Large gravel slide events due to inadvertent human actions between the
waterfall and highway 101 in 2005 and 2007 caused the channel to become heavily
aggraded. Photographs show that deposition of sediment have caused the creek to rise 10
feet at an upstream bridge. These gravel slides has cased the stream’s groundwater to rise
to a point that it is now drowning the roots of trees causing them to die. In 2008, 5000

cubic yards of this aggraded gravel and sediment were removed near the falls as a part of
a rehabilitation project.
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The 150 feet single-span bridge constricts the flow of Lilliwaup Creek at the
mouth of the estuary directing all the flow to one opening as opposed to the two channels
that the estuary historically had. Downstream roadway embankments are fortified with
concrete rubble and armoring. The properties along the sides of the bay also have
concrete bulkheads. The western side of the estuary has concrete in the marsh and along
the bank both upstream and downstream of highway 101 to protect the roadway. The area
is privately owned other than Highway 101 itself, but the property owner upstream is
supportive of stream restoration plans. However the interest of other property owners
nearer to Highway 101 are unknown.
d. Restoration Design
i. Restoration Overview
The main part of the restoration plan is to replace the Highway 101 bridge and the
supporting embankments with a longer bridge. In the full restoration plan, the bridge will
span the width of the estuary, completely removing the stressors and will help the most in
the attempt for the estuary to return to its historical condition. In the partial restoration

plan, the bridge will not span the entire estuary, but it will be longer than the existing
bridge and it will not affect the nearby properties and structures as much. Only two
structures would be removed under the partial restoration plan, compared to the seven
structures that would have to be removed under the full restoration plan. The creek mouth
would still be restricted somewhat, but tidal exchange should be restored upstream of the
bridge. Both restoration plans also include sediment removal. The full restoration plan
will remove all the sediment that has accumulated so that the sediment in the channel and
estuary are back to the way it was according to the 1884 T-sheet. The partial restoration
plan will only remove the sediment that has aggraded the channel. Removing aggraded
sediment would help with tidal flow and prevent the sediment from going farther
downstream and negatively impacting the estuary role in the ecosystem. The full
restoration plan also calls for extensive channel excavating, shoreline modifications, and
beach reconstruction and nourishment in an attempt to model the estuary in a way that it
was historically. The partial restoration plan also calls for these alterations, but to a lesser
degree. Some of the area might need to be purchased as it is on private property.
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ii. Primary management
The concrete armor on the downstream side of the causeway will be removed.
Two additional bulkheads will be removed for the full restoration plan, but only one will
be removed under the partial restoration plan. The current earthen embankments for the
roadway will be removed along with the roadway once the new bridge is constructed.
The landslides that occurred in 2005 and 2007 almost completely filled the western
channel causing the bulk of Lilliwaup Creek to in the eastern channel. The main channels
will be deepened and widened based on the review of historic channels, but more analysis
is required to determine how much excavation needs to take place. Both channels would
be moved closer to their historic paths and away from the center of the estuary. The
restored tidal marsh will also require channels to be excavated in order to allow tidal flow
in the area that is currently filled with aggraded sediment and earthen fill. The tidal marsh
will have two new channels totaling 660 feet long and 12 feet wide as determined by
hydraulic geometry analysis. As for the bridge removal, the current 150-foot-long bridge
will be replaced by a 600-foot-long bridge under the full restoration plan or a 500-foot-long
bridge under the partial restoration plan. Highway 101 will have to be realigned a
total of 1200 feet due to the bridge being built in a different place than the current bridge.
Two areas between the eastern and western channels of Lilliwaup Creek will be
excavated to marsh plain elevation. The total area excavated will be about 22,000 cubic
yards. A small tidal pool will be constructed downstream of the western side of the
estuary in an area that is currently filled and developed to replicate the barrier lagoon that
the 1884 T-sheet shows in this location. Approximately 750 cubic yards of material
would be excavated to make this back beach tidal pool.
Gravel and sediment excavated from the channel and marsh will be used to
reconstruct the beach in a way that it would naturally be shaped. The 1884 T-sheet shows
gravel beaches along the shores of Lilliwaup Estuary. The length of the new western
beach will be approximately 850 feet under full restoration plan or 350 feet under the
partial restoration plan. The length of the new eastern beach will be approximately 3250
feet under both plans. The total gravel required for beach nourishment is approximately
9200 cubic yards for full restoration and 5000 yards of partial restoration. Under both

alternatives, approximately 150 tons of large boulders and slabs of concrete spread across
the western half of the estuary will be removed. Piles of wood will also be placed in
along the channel and within the marsh to provide structure to maintain the channels and
habitat for anadromous fish. About five wood structures of three or four logs each will be
placed in the channel while three would be placed on the restored beaches. About one
acre of riparian area will be planted with riparian vegetation where excavation of the
channel has taken place. Additionally, the planting of upland vegetation will occur in the
full restoration plan downstream of the western shore of the estuary.
20
iii. Additional management
Structures will have to be demolished in both the full restoration and the partial
restoration plans. Seven structures covering 16,500 square feet would be removed under
the full restoration plan while only the northernmost building downstream of the bridge
will be demolished under the partial plan. 2200 square feet of abandoned buildings on the
western side of the bridge will be removed in both alternatives. Removing these
structures will help restore the shore and the western channel to their natural conditions.
Power, telephone, and telecommunications on the current bridge will be moved to the
new bridge once it has been constructed.
Private property and utilities in the area of action will assumedly have to be purchased for
restoration modification to occur. WSDOT right-of-way may need to be acquired to
allow for the new road alignment.
iv. Considerations
The new bridge will be built just north of the current one in order to prevent
traffic from halting during construction. The full plan calls for a 600-foot-long bridge
with six spans while the partial plan calls for a 500-foot-long bridge with five spans. The
substructure of the bridge will have columns on drilled shafts 100 feet deep into the
ground. Large-diameter casing shoring will be necessary when drilling the shafts for the
bridge support columns. The current road will need to be realigned with the new bridge.
The new road will consist of two 12-foot lanes along with 3-foot and 10-foot shoulders.
The total length of roadway modifications will be approximately 1350 feet. Further
analysis will be conducted on the disposal sites and possible reuses for the earth and
gravel excavated during this project. Using the sediments as local roadway fill is a strong
possibility.
e. Expected Outcomes
After restoration, the Lilliwaup Estuary area will evolve toward a state of
dynamic equilibrium that is similar to its historic conditions. This will include more
defined channels, a greater diversity of salinity and vegetation, and fluctuations in
hydraulic and sediment processes. Without restoration, the unnaturally large sediment
pulse and blockage caused by Highway 101 will continue to degrade the habitats of the
flora and fauna that naturally occur in the area.
f. Uncertainties
A large uncertainty for this project concerns the area outside of the project area.
Large depositions of gravel have occurred upstream from the target area. While

additional sediment volumes as large as the 2005 and 2007 rockslides are unlikely,
sediments already downstream of the falls could become a risk of estuarine processes in
the future by affecting morphology, habitat, and tidal exchange. The significance of this
risk has not ben fully evaluated, but the full restoration plan greatly reduces the possible
severity by removing sediment farther upstream towards the falls. Removing the
embankment of Highway 101 will also reduce the risk by allowing for sediment passage
into Hood Canal. Other risks possibly posed by this problem include privately owned
shorelines downstream being affected by the sediment transport and creek channels, and
the significant changes to the watershed since 1884 could make the natural hydrology and
sediment process challenging to define and use as a basis for restoration.
21
Strait of Juan de Fuca - Nearshore Project
Intertidal beaches of the Puget Sound provide key environmental factors
contributing to the marine ecosystem. Forage fish such as surf smelt and sand lance
spawn, feed, nurse, and migrate in these marine ecosystems. The fish are prey for
predatory fish, birds, and other various mammals. The forage fish are a critical
component of the complex marine food web and are important to the conservation,
restoration, and economic concerns of the Pacific Northwest (Nearshore Drift Cells). The
fish bind to sand and gravel for the eggs to be laid. The grain size must be suitable for
spawning and varies depending on erosion, transport, and deposition. Sediment processes
directly affect habitats suitable for forage fish. Sediment deposition varies with season,
available wave energy, bluff land sliding, river deposits, shoreline alterations, and in-river
damming. The sediment supply impacts the nearshore ecological functions and
habitats of Puget Sound’s Strait of Juan de Fuca.
The Nearshore Project included 4,000 km of shoreline, receiving runoff 36,000-
km2 watershed that includes 16 major rivers. Three major ecosystem types including
terrestrial, freshwater, and marine are the transitional zones for the Puget Sound. The
project encompassed 812 beach systems intersecting with 2,800 small creeks, studded by
884 embayments, and 16 major river deltas created by the last glacial retreat. The
physical processes that sustain the beach systems are tidal flux, erosion and deposition,
wave-driven bluff erosion, and long shore transport of sediment. The ecological
processes are constantly changing the shoreline and the sea levels have adjusted creating
exposed and protected habitats home to rich and productive biota.
Since the last half of the 19th century, tidal and fill barriers have shortened the shoreline
by approximately 430 miles. Thirty percent of the shoreline has been armored for the
protection of private property from erosion. Overall 34.6% of all shorelines in the Puget
Sound lack natural vegetation. The habitats for all types of species has been disturbed
severely causing the Endangered Species Act to gain 20 more listings with many more
being considered. The aim for the project was to achieve a shared understanding to guide
and coordinate Puget Sound nearshore ecosystem restoration, including a
recommendation to congress for authorization of an ecosystem restoration project
through the Water Resources Development Act (Cereghino 2012). The restoration of
nearshore ecosystems is important because the structure of the nearshore not only
depends on the ecosystem processes but also provides habitat for many biota (Goetz et al.
2004).

The project was designed to be cost effective by choosing ones that had the most
potential of restoring function and protecting shorelines. The developed shorelines cannot
be ignored because of water pollution and endangered species inhabiting these areas.
Goetz et al (2004) and Greiner (2010) hypothesized these recommendations and
assessments for the Puget Sound:
22
1. By restoring degraded physical processes we maximize the sustainability and
resilience of a complex nearshore ecosystem structure that is similar to the
historical template, and to which a diverse biota are best adapted.
2. A complex and dynamic nearshore ecosystem, with intact physiographic
processes, is most likely to continue to provide functions, goods, and services into
the future, as compared to systems with degraded processes.
3. This management of physiographic processes most reliably occurs at the scale at
which those processes operate in the landscape.
4. Protection of existing unimpaired systems is more effective and efficient then
restoration of impaired systems, and protection and restoration must be used in
combination to achieve ecosystem restoration goals at the necessary scale.
The Puget Sound shoreline is composed of systems where waves transport beach
sediments from eroding bluff-backed beaches. The barrier embayments, or bluffs,
account for 9% of the shoreline length. Sediments come from coastal bluffs and move in
the direction of the prevailing winds. 711 barrier-type embayments were accounted for
and 518 of the sites historically were located at the convergence zone of two drift cells.
The barrier embayments account for 6.9% of the Puget Sound tidal wetlands and are key
for juvenile salmon survival. Improvements need to be made to the ecosystem functions.
The de-vegetation reduces beach productivity. The beach no longer provides a critical
food source for the endangered Juvenile Chinook Salmon. Shoreline armoring reduces
the diversity and abundance of beach fauna as well as wood debris accumulation. Trying
to stabilize the shoreline in response to coastal erosion can degrade supply and transport
of sediments. The challenges the project faces are the complexity and unique character of
the beaches, quantitative methods for predicting sediment supply, and the sea level rise.
The strategy description for beaches was to protect and restore sediment input and
transport processes in littoral drift cells where wave energy results in bluff erosion that
sustains beach structure. The barrier embayments strategy includes all the beach aspects
and adds restoring the tidal flow process. When considering the areas of focus the barrier
beach backshore is important because it supports a unique set of biota and habitat
services (Guttman 2009). Therefore the highest potential beaches are long systems with
extensive barrier beaches and high density of stream mouths.
The sub-basin for Strait of Juan de Fuca was one of the many sites studied in the
Nearshore Project. It is exposed to Pacific Ocean waves more than any other sub basin,
and much of the coastline is a primarily long drift cell punctuated by barrier embayments
and rocky shorelines. 83% of beach sites are considered high potential, being the highest
proportion in all of Puget Sound. The Dungeness spit had a high degradation of shoreline.
23 of 29 beach systems in Juan de Fuca include some barrier embayment features with
future risk projections indicating a moderate to low risk of restoration. The high potential
sites that are surrounded by the growing population will be affected by population
increase.

Physical features of the Pacific Northwest affect nearshore environment behavior.
The tidal influence varies from season to season. There is a light limitation for the
spawning of forage fish. The influence from tides extends from the tree line to 30 meters
below water. The slightest atmospheric pressure changes the sea level dramatically. The
atmospheric pressure change due to long-term climate change is referred to as a
meteorological residual, where the passage of a weather system is a surge.
Forage fish are vital to the complex marine food chain web. Surf smelt and sand
lance are common forage fish in the Strait Juan de Fuca. They favor intertidal beaches
with specific sediment grain size distributions (Nearshore drift cell). The nearshore
habitat acts as a nursery corridor for the fish during the winter and summer months.
Marine birds, mammals, and predatory fish including the endangered Pacific salmon prey
on surf smelt and sand lance. Greater numbers of forage fish increase the changes of a
diverse, functional marine ecosystem. The upper third of the tidal range facilitate the eggs
of the forage fish attaching to sand and gravel during high tide in less than 10 cm of
water. The fish are a vital part of the ecosystem function and habitat growth.
Beach habitats are located within coastal drift cells. Coastal drift cells, also known
as littoral cells, are segments that encompass a single system of sediment input, transport,
and direction (Cereghino 2012). Drift cells are shaped by wave-driven sediment supply
and transport. The available wave energy distributes the sediments from bluff landslides
and rivers. Sedimentation deposits from rivers form deltas at the mouths of rivers due to
bed-load transportation, which supply the beaches with gravel and sand. Erosion from the
bluffs can vary between sand particles to boulders. The erosion from the bluffs transports
alongshore within the drift cells to deposit on beaches. Humans, wave energy,
precipitation and slope undercutting by beach erosion cause the bluffs to erode (Parks
2013). The sediment delivery process impacts ecological habitats of the Puget Sound
beaches.
The bluffs can also be known as feeder bluffs. Erosion from the bluffs contributes
to sand and gravel deposits on the intertidal beaches that facilitate forage fish spawning.
A comparison study between intact Dungeness Bluffs and impaired Elwha Bay showed
sediment delivery from bluffs occurred at sufficient, high rates with seasonal pulses. The
seasonal pulses occurred late spring to early fall which correspond to spawning season
for the forage fish. Spawning was discovered in both sites because of an active feeder
bluff upstream from the impaired site. The table shows meters of beach sampled and the
total number of eggs found during the 2007-2008 studies.
23
Table 1: Total eggs found over various sites of the Strait Juan de Fuca
Site Linear Meters of
Beach Sampled
2007
Total Eggs Found
2007
Dungeness Spit 3963 0
Ediz Hook 1981 0
Dungeness Bluffs 7315 357
Elwha Bluffs 3962 0
Crescent Bay 2743 0
Freshwater Bay 914 62

24
Site Linear Meters of
Beach Sampled
2008
Total Eggs Found
2008
Dungeness Spit 3963 0
Ediz Hook 1981 0
Dungeness Bluffs 7315 8
Elwha Bluffs 3962 0
Crescent Bay 2743 0
Freshwater Bay 914 1
The number of eggs drops severely in 2008 but even so the active feeder bluff
upstream of the impaired site (Freshwater Bay) still affects the egg production. This link
shows a connection between fluvial and nearshore geomorphic habitat types (Nearshore
drift cell). Feeder bluffs are sediment sources for forage fish.
The disruption of sedimentation transport significantly impacts the characteristics of the
beach. In-river dams, dikes, and shoreline armoring displace sediment transport
processes. The beach width is reduced because of the decreased amount of drift sediment
and loss of backshore (Beaches and Bluffs). The sediment mean grain size increases with
disruptions and leaves the beach susceptible to erosion. The increasing sediment size
leaves little to no suitable habitat for forage fish to spawn. The removal of the Elwha and
Glines Canyon dams began in September 2011 (Nearshore drift cells). Although even
with the dam removal, the shoreline armoring only allows a partial restoration because
70% of sediment used to come from the Elwha drift cell.
Sediment supply was the focus of restoring and protecting beaches, without it the
ecosystem process restoration would be considered incomplete. Sediment transport,
erosion and accretion of sediments, solar incidence, freshwater input, and detritus
recruitment and retention all depend on the sediment supply being fully restored. Armor
removal is the primary restoration management measure to restore the sediment supply.
The armor is meant to protect bluffs and banks from erosion, but they have caused much
devastation to the shorelines. Soft armoring by using organic materials or naturalistic
features is unlikely to have a positive impact restoring and protecting beaches. Removal
of the armor allows the sediment to freely enter a drift cell, where it can be transported
down drift to a beach. Other structures such as groins or overwater structures should be
removed so they no longer starve the down drift beaches of sediment. Revegetation,
channel rehabilitation and creation, and topographic restoration should also be
considered.
Beaches have a physical ecosystem response to reduced sediment inputs. The
physical response includes larger and coarser sediments that are unsuitable for forage fish
habitats. The fish habitats spawn on intertidal beaches where the eggs attach to sand and
gravel. There has been decreased sediment delivery was due to in-river damming, dikes,
and shore armoring which does not allow the spawning of fish to take place. The volume
of sediment material, timing, composition, and rate elements all contribute to nearshore
ecological function (Parks 2013). The restoration of ecological functions has begun with
removing the dams. Further actions need to be taken for the restoration of the Strait Juan

de Fuca even with the dam removal. The shore armoring could be softened, removed
completely, or large woody debris structures placed on the shores of the beach to promote
sediment deposits. The protection of unarmored beaches is very important because once
armored it is very expensive and time consuming to only attempt for partial restoration.
The sediment supply of the beaches impacts the nearshore ecological function and
habitats of the Puget Sound.
25

26
References:
Cereghino, Paul, Jason Toft, and Charles Simenstad. "Strategies for Nearshore Protection and
Restoration in Puget Sound." Technical Report 2012 (2012): 1-140. Puget Sound
Nearshore Ecosystem Restoration Project. Web. 20 Mar. 2014.
<http://www.pugetsoundnearshore.org/technical_papers/psnerp_strategies_maps.pdf>.
Clancy, M., I. Logan, J. Lowe, J. Johannessen, A. Maclennan, F.B. Van Cleve, J. Dillon, B.
Lyons, R. Carman, P. Cereghino, B. Barnard, C. Tanner, D. Myers, R. Clark, J. White,
C.A. Simenstad. M. Gilmer, and N. Chin. 2009. Management measures for protecting
and restoring the Puget Sound nearshore. Puget Sound Nearshore Partnership Report
No. 2009-01. Published by Seattle District, Washington Department of Fish and Wildlife,
Olympia, Washington.
Clancy, Margaret, Ilon Logan, and Jeremy Lowe. "Management Measure for Protecting and
Restoring the Puget Sound Nearshore.” Technical Report 2009-01 (2009): 1-140. Puget
Sound Nearshore Ecosystem Restoration Project. Web.
<http://www.pugetsoundnearshore.org/technical_papers/psnerp_strategies_maps.pdf>.
Environmental Science Associates (ESA), ESA PWA, Anchor QEA, Coastal Geologic Services,
KPFF, and Pacific Survey & Engineering. 2011. Strategic Restoration Conceptual
Engineering Final Design Report. Puget Sound Nearshore Ecosystem Restoration
Project. Published by Washington Department of Fish and Wildlife, Olympia,
Washington, and U.S. Army Corps of Engineers, Seattle, Washington.
Goetz, F., C. Tanner, C. Simenstad, K. Fresh, T. Mumford, M. Logsdon. 2004. Guiding
restoration principles. Puget Sound Nearshore Partnership Report No. 2004-03. Published
by Washington Sea Grant Program, University of Washington, Seattle, Washington.
Greiner, C.A. 2010. Principles for strategic conservation and restoration. Puget Sound
Nearshore Report No. 2010-1. Published by Washington Department of Fish and
Wildlife, Olympia, Washington.
LLTK (Long Live the Kings). 2010. Draft Lilliwaup Creek Watershed Assessment and Project
Design Evaluation.
Parks, David, Anne Shaffer, and Dwight Barry. "Nearshore drift-cell sediment processes and
ecological function for forage fish: implications for ecological restoration of impaired
pacific northwest marine ecosystems." Journal of Coastal Research 29.4 (2013): 984+.
Academic OneFile. Web. 28 Mar. 2014.
Penttila, Dan. “Maine Forage Fishes in Puget Sound.” Technical Report 2007-03 (2007).
Puget Sound Nearshore Ecosystem Restoration Project. Published by Wasington
Department of Fish and Wildlife, Olympia, Washington
Schlenger, Paul, Andrea MacLennan, Erin Iverson, and Kurt Fresh. "Strategic Needs
Assessment: Analysis of Nearshore Ecosystem Process Degradation in Puget
Sound." Pugetsoundnearshore.org. Puget Sound Nearshore Ecosystem Restoration
Project, 2011. Web.
<http://www.pugetsoundnearshore.org/technical_papers/strategic_needs_assessm
ent_final.pdf>.
Shaffer, J Anne, Ryan Moriarty, Jason Sikes, and Dan Penttila. "Nearshore Habitat Mapping
of the Central and Western Strait of Juan De Fuca Phase 2: Final Report." Puget Sound.
Washington Department of Fish and Wildlife, 30 June 2003. Web. 14 Mar. 2014.
“Strategic Restoration Conceptual Engineering – Design Report.” Puget Sound Nearshore
Ecosystem Restoration Project. May 2011

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