ARYA.J
MSc MICROBIOLOGY
GENERAL PROPERTIES
• Gram negative , areobic , non sporing , non capsulated bacilli.
• Motile :polar flagella
• Non fermentative and oxidase positive
• Sprophytes ;mostly in soil water and decomposing matter
• Major pathogen in hospitalized and cystic fibrosis patients
• Pathogenic member :Pseudomonas aeruginosa
PSEUDOMONAS AERUGINOSA
Morphology
• Slender , gram negative bacilli ,non sporing, non capsulated ,motile.
• Most strain possess pili
• Occasionally strains have 2 or 3 polar flagella
VIRULENCE FACTORS AND PATHOGENESIS
• Pathogenesis mainly :develop widespread resistance to multiple
antibiotics and disinfectants
 Colonization :organism adhere and colonize the host surface
• polar flagellum to reach the host’s surface and pili ,fimbria to attach.
 Toxins
• Non diffusible toxins :exotoxin S,U,T &Y
Colonized organism via type 111 immune system inject the toxin to host cells
bacteria invade phagocytic cells cytotoxic activity tissue injury
• Diffusible toxins: exotoxin A by organism’s type 11 secretion system
act freely and cause tissue injury
most important virulence factor
inhibits protein synthesis by inhibiting elongation factor 2
 Enzymes :elastases ,proteases ,phospholipases ,hamolysins e.t.c…
 Host’s inflammatory response :as a defence mechanism
against bacilli components like endotoxin and flagellin mediated via
TLR 4&5 produce tissue injury and septic shock
 Pigment production :diffuse freely , inhibits other bacteria and
mediate tissue injury
• Pyocyanin :blue green phenazine by Ps.aeruginosa ;soluble in
chloroform and water
• Fluorescein (pyoverdin) :greenish yellow insoluble in chloroform and
soluble in water
• Pyorubin :reddish brown pigment ;soluble in water
• Pyomelanin :brown to black pigment
pyoverdin
pyorubin
pyomelanin
 Alginate coat :some mucoid strains have slime layer /alginate layer
and produce biofilm ,helps in adhesion to host cell ,cause infection
 Capsule :preventbacteria from phagocytosis
 Multidrug resistance
 Biofilm formation :prevent entry of antibiotics into bacterial cell
 Multi disinfectant resistance
 Wide temperature range :survives in extremes of temperature 5-45°C
CLINICAL MANIFESTATIONS
• Cause infection in almost all sites ;common in lungs ,skin , and soft t/s
• Mostly in hospitalized patients colonized with organisms
from contaminated hospital environment /hospital staff.
• Colonized patients :risk factors burnwounds,immunosupressed
and post surgical patients.
VAP : in patients on ventillator in ICU
Chronic respiratory tract infctions :in patients with cystic fibrosis,
bronchiectasis / chronic panbroncholithiasis.
o mucoid strains of pseudomonas cause this infection
o These strains adhere the mucous initiates infection
Bacteremia :to sepsis and septic shock
Infective endocarditis : IV drug abusers
Ear infections :mild ; Swimmer’s ear ( children ) & malignanat
otitis externa (elderly diabetic patients )
Eye infections :corneal ulcers and endopthalmitis
Shanghai fever :mild febrile fever resmbling typhoid fever
Skin and soft tissue infection
• Burn patients :infect burn wounds
• Ecthyma gangrenosum :acute necrotising condition in AIDS
febrile neutropenia patients
• Dermatitis :folliculitis and papular/vesicular lesions
• Toe –web infections
• Green nail syndrome :inflammation of t/s adjacent to nail with green
pus formation
• Cellulitis :blue green pus
Other infections like osteomyelitis,septic arthritis.meningitis,UTI
LABORATORY DIAGNOSIS
Specimen :pus, wound swab, urine, sputum, blood or CSF
Direct smear :Gram negative slender bacilli and pus cells
[occasionally capsulated no spores]
Culture :non fastidious ,obligate aerobe
 Peptone water :uniform turbidity with surface pellicle
 Nutrient agar :large ,opaque ,irregular with metallic sheen
(iridescence) with blue green diffusible pigment
Pigment production enhanced : King’s media
Smell : most have sweet ether / alcohol like fruity odor
• After aerobic incubation on NA for 24 hrs at 37°C six distinct
colonial types are observed
 Type 1: large , low convex ,rough , often oval
 Type 2: small , smooth domed
 Type 3 & 4 :small , rough and rugose
 Type 5 : mucoid , alginate producing
 Type 6: dwarf and slightly mucoid
 Blood agar :β hemolytic grey moist colonies
 Macconkey agar : pale NLF colonies
 Selective media cetrimide agar :to isolate organism from mixed
growth in purulent specimen
 Culture smear and Motility :Gram negative bacilli and actively motile
by single polar flagellum
Biochemical reaction
 Oxidase and catalase :positive
 Non fermenter but utilize sugars oxidatively
 OF : Oxidative
 Indole test : negative
 Citrate : utilized
 Urease :hydrolysed
 TSI : k/no change no gas &no H2S
Typing Methods
 Various typing for epidemiological studies are
• Bacteriocin (pyocin) typing :ability of strain producing distinct
bacteriocin that inhibits certain indicator bacterial strains.
• Antibiogram typing : is based on the antimicrobial resistance pattern
of strain.Easiest and most commonly used method.
• Serotyping : based on O and H antigens ,17 serotypes of P.aeruginosa
have been recognized
• Molecular methods : pulse field gel electrophoresis (PFGE) and
sequence based typing method
TREATMENT
Pseudomonas species are resistant to most of the antibiotics
• Penicillins : piperacillin , mezlocillin , ticarcillin
• Cephalosporins : ceftazidime , cefoperazone , ceftolozane ,and
cefepime
• β –lactamase inhibitor : combinations ( piperacillin – tazobactam and
cefoperazone – sulbactam)
• Carbapenems :imipenem , meropenem ,doripenem
• Monobactam :aztreonam
• Aminoglycosides :tobramycin , gentamicin , amikacin
• Quinolones : ciprofloxacin , levofloxacin
• Polymyxins : polymyxin B , colistin
DRUG RESISTANCE
Possesses a number of drug resistant plasmids
Many strains are producers of β lactamases such as ESBL ,
carbapenemases and AmpC β lactamases .
Many strains are resistant to aminoglycosides and quinolones
PREVENTION
Hand hygiene is important to limit the spread of infection
OTHER NON FERMENTERS
BURKHOLDERIA
• Oxidase positive , non fermenters
• Bipolar staining (safety pin appearance )
• Resistant to polymyxin B
BURKHOLDERIA PSEUDOMALLEI
• the causative agent of melioidosis
• Habitat: B. pseudomallei is a saprophyte of soil and water.
Melioidosis also occurs in rats, rabbits and guinea pigs.
• Mode of transmission: Humans and animals are infected by inoculation, inhalation or
ingestion.
Man to man transmission is very rare.
• Virulence factors: B. pseudomallei is perhaps the most virulent among the non-
fermenters. Several virulence factors such as polysaccharide capsule, type 1V secretion
system, LPS, toxins and enzymes.
Risk factors
• Diabetes
• Renal failure in adults
• Traumatic inolcutaion in children
• Rainy season
• Occupation [rice farmers]
 Incubation period
• From 2 days to many years
• Some cases have long latency ;presesented long time after exposure so
mellioidosis also called “Vietnam time bomb disease”
Clinical features
• Can present with array of manifestations so called great mimicker
 Acute , localized infection : nodule , fever , general muscle aches , & progress
rapidly to blood
 Sub acute / pulmonary : mild bronchitis to severe tuberculosis like pneumonia
 Acute blood stream infection : seen in HIV , renal failure and diabetes patients :;
ptresent as septicemia with metastatic pus – filled skin lesions
 Chronic suppurative infection : form abscesses in joints , viscera , lymoh nodes ,
skin . Brain , liver , lungs , bones , spleen .
Bioterrorism
Used as a potential agent of biological warfare
Laboratory diagnosis
• Specimen: depends on site of infection,
sputum, purulent discharge from lesion, etc
• Direct microscopy : gram-negative bacilli , typically exhibit a bipolar or safety pin
appearance which is better seen when stained with methylene blue.
• Culture :obligate aerobe, grows in various media, e.g. nutrient agar, blood agar
and MacConkey agar. colonies are typically rough and corrugated
 Ashdown's medium is used as a selective medium, where it produces wrinkled
purple colonies.
Biochemical reactions:
Important properties that differentiate it from Pseudomonas stutzeri include:
• Gelatin liquefaction positive
• Utilizes arginine
• Positive for intracellular poly β hydroxy butyrate
 Latexagglutination test:
Cultures can be confirmed by latex agglutination test using specific antisera
Treatment of melioidosis
Intensive phase (2 weeks): Ceftazidime or acarbapenem is given followed by
Maintenance phase (12 weeks): Oral cotrimoxazole is given to eradicate the bacilli
PSEDOMONAS.pptx for educational purposes

PSEDOMONAS.pptx for educational purposes

  • 1.
  • 2.
    GENERAL PROPERTIES • Gramnegative , areobic , non sporing , non capsulated bacilli. • Motile :polar flagella • Non fermentative and oxidase positive • Sprophytes ;mostly in soil water and decomposing matter • Major pathogen in hospitalized and cystic fibrosis patients • Pathogenic member :Pseudomonas aeruginosa
  • 3.
    PSEUDOMONAS AERUGINOSA Morphology • Slender, gram negative bacilli ,non sporing, non capsulated ,motile. • Most strain possess pili • Occasionally strains have 2 or 3 polar flagella
  • 4.
    VIRULENCE FACTORS ANDPATHOGENESIS • Pathogenesis mainly :develop widespread resistance to multiple antibiotics and disinfectants  Colonization :organism adhere and colonize the host surface • polar flagellum to reach the host’s surface and pili ,fimbria to attach.  Toxins • Non diffusible toxins :exotoxin S,U,T &Y Colonized organism via type 111 immune system inject the toxin to host cells bacteria invade phagocytic cells cytotoxic activity tissue injury
  • 5.
    • Diffusible toxins:exotoxin A by organism’s type 11 secretion system act freely and cause tissue injury most important virulence factor inhibits protein synthesis by inhibiting elongation factor 2  Enzymes :elastases ,proteases ,phospholipases ,hamolysins e.t.c…  Host’s inflammatory response :as a defence mechanism against bacilli components like endotoxin and flagellin mediated via TLR 4&5 produce tissue injury and septic shock
  • 6.
     Pigment production:diffuse freely , inhibits other bacteria and mediate tissue injury • Pyocyanin :blue green phenazine by Ps.aeruginosa ;soluble in chloroform and water • Fluorescein (pyoverdin) :greenish yellow insoluble in chloroform and soluble in water • Pyorubin :reddish brown pigment ;soluble in water • Pyomelanin :brown to black pigment
  • 7.
  • 8.
     Alginate coat:some mucoid strains have slime layer /alginate layer and produce biofilm ,helps in adhesion to host cell ,cause infection  Capsule :preventbacteria from phagocytosis  Multidrug resistance  Biofilm formation :prevent entry of antibiotics into bacterial cell  Multi disinfectant resistance  Wide temperature range :survives in extremes of temperature 5-45°C
  • 9.
    CLINICAL MANIFESTATIONS • Causeinfection in almost all sites ;common in lungs ,skin , and soft t/s • Mostly in hospitalized patients colonized with organisms from contaminated hospital environment /hospital staff. • Colonized patients :risk factors burnwounds,immunosupressed and post surgical patients. VAP : in patients on ventillator in ICU Chronic respiratory tract infctions :in patients with cystic fibrosis, bronchiectasis / chronic panbroncholithiasis.
  • 10.
    o mucoid strainsof pseudomonas cause this infection o These strains adhere the mucous initiates infection Bacteremia :to sepsis and septic shock Infective endocarditis : IV drug abusers Ear infections :mild ; Swimmer’s ear ( children ) & malignanat otitis externa (elderly diabetic patients ) Eye infections :corneal ulcers and endopthalmitis Shanghai fever :mild febrile fever resmbling typhoid fever Skin and soft tissue infection
  • 11.
    • Burn patients:infect burn wounds • Ecthyma gangrenosum :acute necrotising condition in AIDS febrile neutropenia patients • Dermatitis :folliculitis and papular/vesicular lesions • Toe –web infections • Green nail syndrome :inflammation of t/s adjacent to nail with green pus formation • Cellulitis :blue green pus Other infections like osteomyelitis,septic arthritis.meningitis,UTI
  • 12.
    LABORATORY DIAGNOSIS Specimen :pus,wound swab, urine, sputum, blood or CSF Direct smear :Gram negative slender bacilli and pus cells [occasionally capsulated no spores] Culture :non fastidious ,obligate aerobe  Peptone water :uniform turbidity with surface pellicle  Nutrient agar :large ,opaque ,irregular with metallic sheen (iridescence) with blue green diffusible pigment Pigment production enhanced : King’s media
  • 13.
    Smell : mosthave sweet ether / alcohol like fruity odor • After aerobic incubation on NA for 24 hrs at 37°C six distinct colonial types are observed  Type 1: large , low convex ,rough , often oval  Type 2: small , smooth domed  Type 3 & 4 :small , rough and rugose  Type 5 : mucoid , alginate producing  Type 6: dwarf and slightly mucoid
  • 14.
     Blood agar:β hemolytic grey moist colonies  Macconkey agar : pale NLF colonies  Selective media cetrimide agar :to isolate organism from mixed growth in purulent specimen  Culture smear and Motility :Gram negative bacilli and actively motile by single polar flagellum
  • 16.
    Biochemical reaction  Oxidaseand catalase :positive  Non fermenter but utilize sugars oxidatively  OF : Oxidative  Indole test : negative  Citrate : utilized  Urease :hydrolysed  TSI : k/no change no gas &no H2S
  • 17.
    Typing Methods  Varioustyping for epidemiological studies are • Bacteriocin (pyocin) typing :ability of strain producing distinct bacteriocin that inhibits certain indicator bacterial strains. • Antibiogram typing : is based on the antimicrobial resistance pattern of strain.Easiest and most commonly used method. • Serotyping : based on O and H antigens ,17 serotypes of P.aeruginosa have been recognized • Molecular methods : pulse field gel electrophoresis (PFGE) and sequence based typing method
  • 18.
    TREATMENT Pseudomonas species areresistant to most of the antibiotics • Penicillins : piperacillin , mezlocillin , ticarcillin • Cephalosporins : ceftazidime , cefoperazone , ceftolozane ,and cefepime • β –lactamase inhibitor : combinations ( piperacillin – tazobactam and cefoperazone – sulbactam) • Carbapenems :imipenem , meropenem ,doripenem • Monobactam :aztreonam • Aminoglycosides :tobramycin , gentamicin , amikacin • Quinolones : ciprofloxacin , levofloxacin • Polymyxins : polymyxin B , colistin
  • 19.
    DRUG RESISTANCE Possesses anumber of drug resistant plasmids Many strains are producers of β lactamases such as ESBL , carbapenemases and AmpC β lactamases . Many strains are resistant to aminoglycosides and quinolones PREVENTION Hand hygiene is important to limit the spread of infection
  • 20.
  • 21.
    BURKHOLDERIA • Oxidase positive, non fermenters • Bipolar staining (safety pin appearance ) • Resistant to polymyxin B BURKHOLDERIA PSEUDOMALLEI • the causative agent of melioidosis • Habitat: B. pseudomallei is a saprophyte of soil and water. Melioidosis also occurs in rats, rabbits and guinea pigs. • Mode of transmission: Humans and animals are infected by inoculation, inhalation or ingestion. Man to man transmission is very rare. • Virulence factors: B. pseudomallei is perhaps the most virulent among the non- fermenters. Several virulence factors such as polysaccharide capsule, type 1V secretion system, LPS, toxins and enzymes.
  • 22.
    Risk factors • Diabetes •Renal failure in adults • Traumatic inolcutaion in children • Rainy season • Occupation [rice farmers]  Incubation period • From 2 days to many years • Some cases have long latency ;presesented long time after exposure so mellioidosis also called “Vietnam time bomb disease”
  • 23.
    Clinical features • Canpresent with array of manifestations so called great mimicker  Acute , localized infection : nodule , fever , general muscle aches , & progress rapidly to blood  Sub acute / pulmonary : mild bronchitis to severe tuberculosis like pneumonia  Acute blood stream infection : seen in HIV , renal failure and diabetes patients :; ptresent as septicemia with metastatic pus – filled skin lesions  Chronic suppurative infection : form abscesses in joints , viscera , lymoh nodes , skin . Brain , liver , lungs , bones , spleen .
  • 24.
    Bioterrorism Used as apotential agent of biological warfare Laboratory diagnosis • Specimen: depends on site of infection, sputum, purulent discharge from lesion, etc • Direct microscopy : gram-negative bacilli , typically exhibit a bipolar or safety pin appearance which is better seen when stained with methylene blue. • Culture :obligate aerobe, grows in various media, e.g. nutrient agar, blood agar and MacConkey agar. colonies are typically rough and corrugated  Ashdown's medium is used as a selective medium, where it produces wrinkled purple colonies.
  • 26.
    Biochemical reactions: Important propertiesthat differentiate it from Pseudomonas stutzeri include: • Gelatin liquefaction positive • Utilizes arginine • Positive for intracellular poly β hydroxy butyrate  Latexagglutination test: Cultures can be confirmed by latex agglutination test using specific antisera Treatment of melioidosis Intensive phase (2 weeks): Ceftazidime or acarbapenem is given followed by Maintenance phase (12 weeks): Oral cotrimoxazole is given to eradicate the bacilli