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Fig. 1.11
Nucleus: structure and function
Nucleolus Nucleoplasm
nuclear envelope
Heterochromatin =
too compacted,
transcriptionally inactive
Euchromatin = can be transcriptionally active
Nuclear envelope and lamina
Nuclear
pore
N. lamina
cytoplasm
heterochromatin
Nuclear laminaNuclear lamina
Lamins are filamentous proteins in
the intermediate filament family
Lamin
phosphorylation
in prophase
disassembles the
nuclear lamina &
allows for nuc.
envel. breakdown
Laminins are
extracellular
proteins,
unrelated
Nuclear pore
• nuclear localization
signals (nuclear
import signals)
• nuclear export
signals
• highly regulated
Mitochondria(on)
outer
membrane
inner
membrane
DNA
matrix
cristae
ribosomes ATP synthase
Inner Membrane and matrix
electron
transport
system
ADP3-
ATP4-
pyruvate
Krebs
cycle
NADH
ATP
synthaseFADH2
hi [H+
]
Antiporter
P04
-2 H+
symporter
Endosymbiotic theory: Mitochondria
are similar to prokaryotes
• Own circular, naked DNA
• Own ribosomes - similar to prokaryotic
– e.g. sensitive to same inhibitors
• Divide by fission
• Double membrane suggests endocytosis
Lysosomes: membranous organelles
filled with digestive enzymes
• Breakdown
endocytosed materials
– Thru’ phagocytosis or
receptor mediated
endocytosis
• Breakdown old
organelles (residual
body)
• Acidic pH
Phagocytosis vs. Autophagy
Phagocytosis
Autophagy
lysosomes
Membrane
trafficking
•RER to cis Golgi
•Modified in Golgi
(glycosylation,
phosphorylation)
•Sorted at trans Golgi
network into
•Lysosomal
•Regulated
•constitutive
Synthesis of secreted and membrane proteins
Ribosomes
Rough endoplasmic reticulum
Rough Endoplasmic reticulum
Signal hypothesis: signal peptide,
SRP, SRP-receptor, translocon
SRP = signal recognition particle
Smooth ER, lipid synthesis,
detox, Ca2+
sequestration
Golgi
Transport thru’ Golgi cisternae is
vectorial
Cis Medial Trans
mannose removal
N-acetylglucosamine addition MEDIAL
RER retrieval, PO4 on mannose,
mannose removal
CIS &
CGN
fucose and glucose addition TRANS
sialic acid addition, sorting TGN
Protein modifications occur in steps in
the Golgi. The extent of changes varies.
Glycosylation
Karp, Fig. 8.20
trans Golgi network
regulated
secretion
lysosomal
pathway
constitutive
secretion
Sorting at the TGN
Receptor Mediated endocytosis
Plasma membrane & Fluid
mosaic model
Phospholipids are most common
in membranes
Polar
Head
Fatty
acid
tails
phospholipids, glycolipids, and
cholesterol
Thermodynamics drives membranes to
form sealed compartments
H2O
Cut open
liposome
Fluidity means that lipids (& proteins)
can “float” in the membrane via
diffusion
Time
Three classes of membrane proteins:
Transmembrane proteins (a type of IMP)
OUT
IN
Extracellular
domain (ECD)
Intracellular
domain (ICD)
Transmembrane
domain
Oligosaccharides
- always face out
Three classes of membrane proteins: Lipid-
anchored membrane proteins (IMPs)
OUT
IN
Covalently linked to a glycophospholipid.
E.G.: Normal cellular scrapie protein
& alkaline phosphatase
Covalently linked to fatty acid
E.G.: ras
Three classes of membrane proteins:
Peripheral membrane proteins (PMPs)
OUT
IN
Or, PMPs could
bind to specific
lipid heads.
Specific interaction
between IMP & PMP
IMPs as α-helix or β-barrel
Selective permeability
Osmosis causing cell
lysis.
Four mechanisms by which solute
molecules move ACROSS membranes
Simple diffusion
across bilayer
Simple diffusion
thru channel
Facilitated
Diffusion
thru’ passive
transporters
Active
transport
Membrane Potential Affects Molecular Movement
A. neutral
No effect on inward transport No effect on outward transport
B. cation
Favors inward transport Opposes outward transport
C. anion
Opposes inward transport Favors outward transport
Passive transport by channel
proteins: don’t bind solute & can
be ligand-, voltage-, or stress-gated
Passive Transport by Facilitated diffusion
•Solute binds
transporter protein
•So, transport is
saturable
Kinetics of carrier-mediated
transport
Active transport by the
Na/K pump or ATPase

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Nucleus