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By Gwyneth Gorduiz
MICROBIAL
ECOLOGY AND
MICROBIAL
TECHNOLOGY
01 02
M__R_B__T_
03
Objectives
Name 10 foods that
require microbial
activity for their
production
Define biotechnology
and cite 4 examples of
how microbes are
usee in the industry
Define bioremedian
and cite an example
Objectives
Discuss the beneficial
and harmful roles of
the indigenous
micribiota of the
human body
Describe the biofilms
and thei impact on
human health
Outline the nitrogen
cycle: include the
meanings of the terms
nitrogen fixation,
nitrification,
denitrification, and
ammonification in the
description
MICROBIOTA
• The microbiota consists of a wide variety of
bacteria, viruses, fungi, and other
microorganisms present in a singular
environment, such as the human digestive
tract.
MICROBIOME
• Microbiome refers to the collection of genomes
from all the microorganisms in the
environment, which includes not only the
community of the microorganisms, but also the
microbial structural elements, metabolites, and
the environmental conditions. In this regard,
microbiome encompasses a broader spectrum
than that of microbiota.
INDIGENOUS
MICROBIOTA
• includes all the, microorganisms that are
normally found on or in the body – they
inhabit body surfaces, skin and mucous
surfaces with direct access to the external
environment.
BENEFICIAL AND HARMFUL
ROLES OF
INDIGENOUS MICROBIOTA
BENEFITS
• Humans derive many benefits from their
indigenous microbiota, some of which have
already been mentioned. Some nutrients,
particularly vitamins K and B12, pantothenic
acid, pyridoxine, and biotin, are obtained from
secretions of certain intestinal bacteria.
• indicates that indigenous microbes provide a
constant source of irritants and antigens to
stimulate the immune system.
HARMFUL ROLE
• When subjected to external changes, the
balance of microbiota community can be
affected, leading to dysregulation of bodily
functions and diseases, mounting evidence has
confirmed that microbiota is associated with
the development of CVDs, cancer, respiratory
diseases, diabetes, IBD, brain disorders,
chronic kidney diseases, and liver diseases.
MICROBIAL
ANTAGONISM
Microbial
Antagonism
• The term Microbial antagonism means
"microbes versus microbes" or "microbes
against microbes."
• Many of the microbes of our indigenous
microbiota serve a beneficial role by
preventing other microbes from becoming
established in or colonizing a particular
anatomic location.
OPPORTUNISTIC
PLLHOGENS
Opportunistic
Pathogens
Opportunistic pathogens (opportunists) can be
thought of as organisms that are hangling around,
awaiting the opportunity to cause infections.
BIOTHERAPEUTIC
AGENTS
BIOTHERAPEUTIC
AGENTS
• A “probiotic” or a “biotherapeutic agent” (BTA)
is a living microorganism administered to
promote the health of the host by treating or
preventing infections owing to strains of
pathogens
• Bacteria and Yeasts that are ingested to
reestablish and stabilize the microbial balance
within our bodies are called biotherapeutic
agents.
MICROBIAL
COMMUNITIES
(BIOFILMS)
MICROBIAL
COMMUNITIES
(BIOFILMS)
• Microbial communities are groups of
microorganisms that share a common living
space. The microbial populations that form the
community can interact in different ways, for
example as predators and prey or as
symbionts.
• Biofilms are composed of two categories of
organisms Planktonic (single-celled and free-
swimming) bacteria are released from the surface
of the biofilm,have a normal metabolism, and can
colonize other surfaces to initiate further biofilm
formation. However, once the biofilm is
established, the organisms undergo a
transformation to a quiescent state and are
referred to as "sessile. These organisms are
protected from the effects of antibiotics and many
of the host defense mechanisms.
• Biofilms have been implicated in diseases, such as
endocarditis, cystic fibrosis, middle ear infections,
kidney stones, periodontal disease, prosthetic joint
infections, and prostate infections.
• Infections caused by organisms forming biofilms
are very difficult to treat and require long-term
antibiotics and occasionally surgery for eradication.
• As previously mentioned, biofilms are very
resistant to antibiotics, disinfectants, and certain
types of host defense mechanisms.
• Antibiotics that, in the laboratory, have been
shown to be effective against pure cultures of
organisms within biofilms may be ineffective
against those same organisms within an actual
biofilm. Let us take penicillin as an example.
SYNERGISM
(SYNERGISTIC
INFECTIONS)
SYNERGISM
• Sometimes, two or more J:Dicroorganisms may
"team up" to produce a disease that neither
could cause by itself. This is referred to as
synergism or a synergistic relationship.
SYNERGISTIC
INFECTIONS
• when co-infection by two viruses results in
disease with more severe symptoms than
single virus infection.
• Example; Acute necrotizing ulcerative
gingivities (TRENCH MOUTH).
AGRICULTURAL
MICROBIOLOGY
Agricultural microbiology
is a branch of
microbiology dealing with
plant-associated microbes
and plant and animal
diseases. It also deals
with the microbiology of
soil fertility, such as
microbial degradation of
organic matter and soil
nutrient transformations.
Agricultural microbiology
They are used extensively
in the field of genetic
engineering
to create new or genetically
altered plants. Such
genetically
engineered plants might grow
larger, be better tasting,
or
be more resistant to
insects, plant diseases, or
Role of Microbes in
Elemental Cycles
Bacteria are exceptionally adaptable and versatile.
They are
found on the land, in all waters, in every animal and
plant,
and even inside other microorganisms (in which case
they
are referred to as ENDOSYMBIONTS ).
NITROGEN CYCLE
The nitrogen cycle is a series of processes that convert
nitrogen gas to organic substances and back to nitrogen
in nature. It is a continuous cycle that is maintained by
the decomposers and nitrogen bacteria
Other Soil Microbes
Soil microorganisms encompass
archaea, bacteria, fungi and
protozoa. They are responsible for
the majority of enzymatic
processes in soil and store energy
and nutrients in their biomass
(Jenkinson and Ladd, 1981).
The types and amounts of microorganisms
living in soil depend on many factors,
including the amount of decaying organic
material, available nutrients, moisture
content, amount of oxygen available, pH,
temperature, and the presence of waste
products of other microbes.
INFECTIOUS
DISEASE OF
FARM ANIMALS
Farmers, ranchers, and
agricultural
microbiologists are
concerned about the many
infectious diseases of
farm
animals-diseases that may
be caused by a wide
variety
of pathogens (e.g.,
viruses, bacteria,
MICROBIAL
DISEASES OF
PLANTS
Microbes cause thousands of
different types of plant
diseases, often resulting in
huge economic losses. Most
plant diseases are caused by
fungi, viruses, viroids, and
bacteria. Not only are
living plants attacked and
destroyed,
but microbes (primarily
fungi) also cause the
Plant diseases have
interesting names, such as
blights, cankers, galls,
leaf spots,
mildews, mosaics, rots,
rusts, scabs, smuts, and
wilts
MICROBIAL
BIOTECHNOLOGY
The United Nations Convention on
Biological Diversity defines
biotechnology as "any
technological application that
uses biological systems, living
organisms, or derivatives
thereof, to make or modify
products or processes for
specific use." Although not all
areas of biotechnology involve
microbes, microbes are used in
many aspects of biotechnology
.
PRODUCTION OF
THERAPEUTIC PROTEINS. PRODUCTION OF DNA
VACCINES.
PRODUCTION OF VITAMINS
Human genes are introduced
(usually by transformation)
into bacteria and yeasts.
Such genetically engineered
microorganisms have been
used to produce therapeutic
proteins, such as human
insulin, human growth
hormone,, human tissue
plasminogen activator,
interferon,
hepatitis B vaccine, tumor
necrosis factor,
interleukin-2,
and prourokinase (used to
dissolve blood clots)
DNA vaccines (also called gene
vaccines) are presently only
experimental. To prepare a DNA
vaccine, a particular pathogen
gene (let us use as an example
the gene that codes for a
specific protein on a pathogen~
surface) is
inserted into a plasmid (E. coli
plasmids have been used). Copies
of the plasmid are then injected
(usually intramuscularly) into a
person's tissue
Bacteria can be used
as sources of vitamins
B2 (riboflavin), B7
(biotin), B9 (folic
acid), B12, and K2•
USE OF MICROBIAL
METABOLITES AS
ANTIMICROBIAL AGENTS AND
other types of
therapeutic agents.
AGRICULTURAL
APPLICATIONS.
FOOD TECHNOLOGY7
Penicillins and
cephalosporins are examples
of antibiotics producedby
fungi.
Bacitracin,chloramphenicol,
erythromycin, polymyxin B,
streptomycin, tetracycline,
and vancomycin are examples
of antibiotics produced
by bacteria. R
Certain microbial metabolites
have microbicidal, herbicidal,
insecticidal, or nematocidal
activities. For example, a soil
bacterium named bavcaillus
subtilis secretes compounds with
antifungal, antibacterial, and
insecticidal activities.
Bacterial plasmids are used to
introduce foreign genes into
plants. Plants containing
foreign genes are referred to as
transgenic plants.
Microorganism is used
in the production of
foods such as bread,
butter, cheese and
etc.
PRODUCTION OF CHEMICALS.
BIOMINING
OTHER
Microbes can be used in the
large scale production of
acetic acid, ethanol,
glycerol, as well as
biofuels such as hydrogen
and methane.
Microbes have been used in the
mining of arsenic, cadmium,
cobalt, nickel, uranium zing,
and other metals by process
known as leaching or
bioleaching.
Microbial enzymes used
industry includes
amylases, cellulase,
collagenase, and
proteases.
Two amino acids
produced microbes are
used in the artificial
sweetener called
aspartame(NUTRASWEET).
THANK YOU
GWYNETH GORDUIZ

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MICROBIOLOGY-REPORTINGoeoeodkskekfkzkekg

  • 1. By Gwyneth Gorduiz MICROBIAL ECOLOGY AND MICROBIAL TECHNOLOGY
  • 3. Objectives Name 10 foods that require microbial activity for their production Define biotechnology and cite 4 examples of how microbes are usee in the industry Define bioremedian and cite an example
  • 4. Objectives Discuss the beneficial and harmful roles of the indigenous micribiota of the human body Describe the biofilms and thei impact on human health Outline the nitrogen cycle: include the meanings of the terms nitrogen fixation, nitrification, denitrification, and ammonification in the description
  • 5. MICROBIOTA • The microbiota consists of a wide variety of bacteria, viruses, fungi, and other microorganisms present in a singular environment, such as the human digestive tract.
  • 6. MICROBIOME • Microbiome refers to the collection of genomes from all the microorganisms in the environment, which includes not only the community of the microorganisms, but also the microbial structural elements, metabolites, and the environmental conditions. In this regard, microbiome encompasses a broader spectrum than that of microbiota.
  • 7. INDIGENOUS MICROBIOTA • includes all the, microorganisms that are normally found on or in the body – they inhabit body surfaces, skin and mucous surfaces with direct access to the external environment.
  • 8. BENEFICIAL AND HARMFUL ROLES OF INDIGENOUS MICROBIOTA
  • 9. BENEFITS • Humans derive many benefits from their indigenous microbiota, some of which have already been mentioned. Some nutrients, particularly vitamins K and B12, pantothenic acid, pyridoxine, and biotin, are obtained from secretions of certain intestinal bacteria. • indicates that indigenous microbes provide a constant source of irritants and antigens to stimulate the immune system.
  • 10. HARMFUL ROLE • When subjected to external changes, the balance of microbiota community can be affected, leading to dysregulation of bodily functions and diseases, mounting evidence has confirmed that microbiota is associated with the development of CVDs, cancer, respiratory diseases, diabetes, IBD, brain disorders, chronic kidney diseases, and liver diseases.
  • 12. Microbial Antagonism • The term Microbial antagonism means "microbes versus microbes" or "microbes against microbes." • Many of the microbes of our indigenous microbiota serve a beneficial role by preventing other microbes from becoming established in or colonizing a particular anatomic location.
  • 14. Opportunistic Pathogens Opportunistic pathogens (opportunists) can be thought of as organisms that are hangling around, awaiting the opportunity to cause infections.
  • 16. BIOTHERAPEUTIC AGENTS • A “probiotic” or a “biotherapeutic agent” (BTA) is a living microorganism administered to promote the health of the host by treating or preventing infections owing to strains of pathogens • Bacteria and Yeasts that are ingested to reestablish and stabilize the microbial balance within our bodies are called biotherapeutic agents.
  • 18. MICROBIAL COMMUNITIES (BIOFILMS) • Microbial communities are groups of microorganisms that share a common living space. The microbial populations that form the community can interact in different ways, for example as predators and prey or as symbionts.
  • 19. • Biofilms are composed of two categories of organisms Planktonic (single-celled and free- swimming) bacteria are released from the surface of the biofilm,have a normal metabolism, and can colonize other surfaces to initiate further biofilm formation. However, once the biofilm is established, the organisms undergo a transformation to a quiescent state and are referred to as "sessile. These organisms are protected from the effects of antibiotics and many of the host defense mechanisms.
  • 20.
  • 21. • Biofilms have been implicated in diseases, such as endocarditis, cystic fibrosis, middle ear infections, kidney stones, periodontal disease, prosthetic joint infections, and prostate infections. • Infections caused by organisms forming biofilms are very difficult to treat and require long-term antibiotics and occasionally surgery for eradication.
  • 22. • As previously mentioned, biofilms are very resistant to antibiotics, disinfectants, and certain types of host defense mechanisms. • Antibiotics that, in the laboratory, have been shown to be effective against pure cultures of organisms within biofilms may be ineffective against those same organisms within an actual biofilm. Let us take penicillin as an example.
  • 24. SYNERGISM • Sometimes, two or more J:Dicroorganisms may "team up" to produce a disease that neither could cause by itself. This is referred to as synergism or a synergistic relationship.
  • 25. SYNERGISTIC INFECTIONS • when co-infection by two viruses results in disease with more severe symptoms than single virus infection. • Example; Acute necrotizing ulcerative gingivities (TRENCH MOUTH).
  • 27. Agricultural microbiology is a branch of microbiology dealing with plant-associated microbes and plant and animal diseases. It also deals with the microbiology of soil fertility, such as microbial degradation of organic matter and soil nutrient transformations.
  • 28. Agricultural microbiology They are used extensively in the field of genetic engineering to create new or genetically altered plants. Such genetically engineered plants might grow larger, be better tasting, or be more resistant to insects, plant diseases, or
  • 29. Role of Microbes in Elemental Cycles Bacteria are exceptionally adaptable and versatile. They are found on the land, in all waters, in every animal and plant, and even inside other microorganisms (in which case they are referred to as ENDOSYMBIONTS ).
  • 30. NITROGEN CYCLE The nitrogen cycle is a series of processes that convert nitrogen gas to organic substances and back to nitrogen in nature. It is a continuous cycle that is maintained by the decomposers and nitrogen bacteria
  • 31. Other Soil Microbes Soil microorganisms encompass archaea, bacteria, fungi and protozoa. They are responsible for the majority of enzymatic processes in soil and store energy and nutrients in their biomass (Jenkinson and Ladd, 1981).
  • 32. The types and amounts of microorganisms living in soil depend on many factors, including the amount of decaying organic material, available nutrients, moisture content, amount of oxygen available, pH, temperature, and the presence of waste products of other microbes.
  • 34. Farmers, ranchers, and agricultural microbiologists are concerned about the many infectious diseases of farm animals-diseases that may be caused by a wide variety of pathogens (e.g., viruses, bacteria,
  • 35.
  • 37. Microbes cause thousands of different types of plant diseases, often resulting in huge economic losses. Most plant diseases are caused by fungi, viruses, viroids, and bacteria. Not only are living plants attacked and destroyed, but microbes (primarily fungi) also cause the
  • 38. Plant diseases have interesting names, such as blights, cankers, galls, leaf spots, mildews, mosaics, rots, rusts, scabs, smuts, and wilts
  • 39.
  • 41. The United Nations Convention on Biological Diversity defines biotechnology as "any technological application that uses biological systems, living organisms, or derivatives thereof, to make or modify products or processes for specific use." Although not all areas of biotechnology involve microbes, microbes are used in many aspects of biotechnology .
  • 42. PRODUCTION OF THERAPEUTIC PROTEINS. PRODUCTION OF DNA VACCINES. PRODUCTION OF VITAMINS Human genes are introduced (usually by transformation) into bacteria and yeasts. Such genetically engineered microorganisms have been used to produce therapeutic proteins, such as human insulin, human growth hormone,, human tissue plasminogen activator, interferon, hepatitis B vaccine, tumor necrosis factor, interleukin-2, and prourokinase (used to dissolve blood clots) DNA vaccines (also called gene vaccines) are presently only experimental. To prepare a DNA vaccine, a particular pathogen gene (let us use as an example the gene that codes for a specific protein on a pathogen~ surface) is inserted into a plasmid (E. coli plasmids have been used). Copies of the plasmid are then injected (usually intramuscularly) into a person's tissue Bacteria can be used as sources of vitamins B2 (riboflavin), B7 (biotin), B9 (folic acid), B12, and K2•
  • 43. USE OF MICROBIAL METABOLITES AS ANTIMICROBIAL AGENTS AND other types of therapeutic agents. AGRICULTURAL APPLICATIONS. FOOD TECHNOLOGY7 Penicillins and cephalosporins are examples of antibiotics producedby fungi. Bacitracin,chloramphenicol, erythromycin, polymyxin B, streptomycin, tetracycline, and vancomycin are examples of antibiotics produced by bacteria. R Certain microbial metabolites have microbicidal, herbicidal, insecticidal, or nematocidal activities. For example, a soil bacterium named bavcaillus subtilis secretes compounds with antifungal, antibacterial, and insecticidal activities. Bacterial plasmids are used to introduce foreign genes into plants. Plants containing foreign genes are referred to as transgenic plants. Microorganism is used in the production of foods such as bread, butter, cheese and etc.
  • 44. PRODUCTION OF CHEMICALS. BIOMINING OTHER Microbes can be used in the large scale production of acetic acid, ethanol, glycerol, as well as biofuels such as hydrogen and methane. Microbes have been used in the mining of arsenic, cadmium, cobalt, nickel, uranium zing, and other metals by process known as leaching or bioleaching. Microbial enzymes used industry includes amylases, cellulase, collagenase, and proteases. Two amino acids produced microbes are used in the artificial sweetener called aspartame(NUTRASWEET).