Metadata catalogues survey results, EOSCpilot H2020 EU project

Diane Webb, President of BizInt, presented on new features for the BizInt Smart Charts product family at ICIC 2015 in Nice, France. Key updates included support for the new STN platform, moving clinical trial support to a new product, and bundling pipeline and clinical trial support. Enhancements were also made to existing databases for patents, literature, clinical trials, and drug pipelines. A new launch timeline visualization was introduced to plot drugs by estimated launch date.

How 2019 became the year FAIR landed in biopharmaceutical R&D

Building a national Data Repository Data Modelling

Jisc RDM

This document outlines an agenda for a Jisc workshop on data modelling. The workshop will cover StarUML for data modelling, the Jisc Research Data Shared Service conceptual architecture, the canonical data model on GitHub, modelling for interoperability, making data FAIR according to metadata principles, a recent FAIR practices report, content modelling and content models, mapping between the canonical data model and CERIF standard, and an exercise for participants to build their own content model.

3rd DBpedia Community Meeting - ALIGNED

odhrangavin

This document summarizes a presentation about the ALIGNED project, which received funding from the European Union's Horizon 2020 program. The project aims to develop new methods for parallel software and data engineering of web-scale information systems using Linked Data. It will support the evolution of software that depends on heterogeneous data with an independent lifecycle. The project involves partners from universities and companies and will last from 2015 to 2018.

This document discusses open data requirements for Horizon 2020, the EU's research and innovation program. It provides an overview of open data and its relationship to open science. It emphasizes making research data findable, accessible, interoperable and reusable. It describes the importance of data management plans and provides examples. It also gives guidance on writing data management plans, reviewing them, and identifying appropriate data repositories like Zenodo where researchers can publish and archive their data.

Internal Data Monitoring in OGD and PSI

Bernhard Krabina

The document discusses the need for internal data monitoring in public sector organizations. It outlines challenges like handling sensitive datasets and responding to information requests. An important component is a data catalogue to track what data the organization has, along with metrics to assess datasets for potential publication or reasons for non-publication. The OGD Cockpit tool is presented as a way to manage this process internally using semantic wikis before data is published externally through portals like CKAN. The document also notes plans to harvest the internal catalogue, manage information requests, and define metadata for public sector information.

Bio Data World - The promise of FAIR data lakes - The Hyve - 20191204

ALIGNED Data Curation Methods and Tools

AlignedProject

This document discusses tools and methods for data curation developed by the ALIGNED project. It aims to improve productivity, agility, and quality in curating datasets. The ALIGNED tools support various stages of the data lifecycle including validation, integration, curation, publishing linked data, and ensuring data quality. The document presents the Dacura data curation process and several ALIGNED tools, and highlights their use in real-world data systems including a global history databank. It invites businesses working with data-intensive applications to utilize the ALIGNED consultancy program.

Sshoc kick off meeting - Work Package 5 Pitch - Annette Scherpenzeel

SSHOC

The D4Science Infrastructure

e-ROSA

The document describes the D4Science infrastructure, which provides services and environments to support cross-disciplinary research activities. It offers data discovery, access, processing and publishing services across multiple domains like marine science, social mining, and the humanities. The infrastructure leverages existing resources through federation and APIs, and provides virtual research environments and workspaces in a flexible, scalable manner to support over 5,100 users in 44 countries.

II-SDV 2016 Questel Intellixir

Intellixir is a French data mining software that extracts relevant information from scientific literature through statistical analysis. It imports data from sources like patents, journal articles, and clinical trials. Intellixir allows users to understand emerging trends, major players, and collaborations through dashboards and reports. It is used in industries like cosmetics, pharma, aerospace, and more by information professionals, scientists, and researchers to support R&D, IP management, and strategy. The latest version features a new interface with HTML5 graphs, chemical structure detection, and additional data fields for analysis.

Biased Information Retrieval in Pharmaceutical Drug Development

Pharmaceutical companies are highly dependent on access to high quality information retrieval. Insufficient gathering and selection of scientific information could potentially impact corporate decision-making in a wrong direction. To assess the value of external information retrieval services a number of third party information providers were contacted with two information research requests (within inflammatory diseases). The providers were asked to return with search results and search methodologies used. In the first search the interaction with the providers were kept at a minimal level, whereas in the second search the contact, direction, and interaction were increased. It is concluded that information research results from different providers are variable. The expected increase in inter-homogeneity of results from the different providers could not be confirmed after the second search. The overall overlap of results was 38% for the first search and 33% for the second search, and surprisingly none of the references were found by all providers. To fully cover the area of interest and to avoid bias it is recommended to perform exhaustive scientific literature searches. Researchers and decision-makers should accept large amounts of results from literature searches and promote initiatives to analyse these results in detail.

ICIC 2017: New product presentation minesoft

The document provides information about Minesoft, a company that provides patent search and analysis solutions. It summarizes Minesoft's products and services, including its PatBase database which contains over 60 million patent family records from 106 patent authorities. The document also provides details on the data coverage and sources within PatBase, as well as the search, analytics, and visualization tools it offers users to analyze patent data.

II-SDV 2015, 20 - 21 April, in Nice

DataXDay Conference by Xebia

This document summarizes Dr. Kai Simon's work on large-scale patent classification at the European Patent Office. It discusses how Averbis was selected in 2015 to use text mining to pre-classify unpublished patents and re-classify published patents if the classification system changes. The process involves classifying patents into over 250,000 classification codes across 250 departments, presenting a big data and fast response time challenge that text mining can help address.

DataXDay - A data scientist journey to industrialization of machine learning

Join the journey of a data scientist on the way to industrialization... From notebook to proof of concept, from proof of concept to production, we will cover what happened at Air France. It won’t be golden rules, but a true story. What is exactly industrializing data science? How to package data science models? How to articulate data scientists and data engineers roles? Is continuous integration a wild dream for data scientists? This journey will feed you with key concepts which worked at Air France, and might give you a new light to guide you through your own data science journey. Pauline Ballereau - Air France & Nicolas Laille - Xebia https://dataxday.fr/ video available: https://www.youtube.com/watch?v=ESx6wR6g4ukx

ICIC 2017: Publication Analysis and Publication Strategy

Dieter Küry (Novartis Pharma, Switzerland) Using analytical methods are more and more replacing database searching in a knowledge manager's daily activities. In this presentation various facets of publication analysis will be presented and discussed. These new methods were applied for the analysis of publications in scientific journals and visuals were created to deduct publications strategies. On the technical side, the overall analysis process requires diverse tools for reference managing, text analysis and visualization. The impact on skills of the knowledge manager who moves from the expert for query languages to the expert for creation and maintaining of thesauri is also shown. Main benefit of the analytical methods compared to traditional database searching is the manifold use of results, which are easily adaptable to new requirements.

BDE SC3.3 Workshop - BDE review: Scope and Opportunities

Helix Nebula The Science Cloud

BlueBRIDGE: Major Achievements & future vision

Blue BRIDGE

BlueBRIDGE is a project funded by the European Union to support blue growth (sustainable use of ocean resources) through virtual research environments (VREs) and innovative applications based on EU e-infrastructures. The project aims to facilitate collaboration between scientists, SME innovators, and educators addressing blue growth challenges. It has created 54 VREs covering topics like aquaculture, biodiversity, and stock assessment. BlueBRIDGE also works to enhance e-infrastructure capabilities and integrate resources from multiple providers. Going forward, it seeks to maintain existing VREs and products through business agreements to ensure their long-term sustainability in supporting the blue growth community.

Integrated Approach to Test Geospatial Information Resources Based on INSPIRE...

Martin Tuchyna

This document discusses an integrated approach to testing INSPIRE geospatial resources based on the INSPIRE reference validator API. It describes two motivating use cases for validating INSPIRE resources in Slovakia. A pilot prototype was developed that allows searching for and extracting INSPIRE metadata, executing validation tests in batches, and managing resulting reports and logs. Future directions include expanding test capabilities and integrating with additional registries, as well as enhancing reporting functionality and localization.

Ogi pilots-presentation-delft sarah-roberts

OpenGovIntelligence

The European Open Science Cloud

ICIC 2014 New Product Introduction BizInt

BizInt Smart Charts provides software tools to help information specialists create reports and visualizations by integrating data from key sources such as drug pipeline databases, clinical trials databases, patent databases, gene sequence databases, and literature databases. The software includes a "Cookbook" with step-by-step recipes for using the tools to answer business questions. It also features tools for cleaning, filtering, and visualizing the data in tables and charts in order to analyze trends such as clinical trial timelines, patent landscapes, and indications by development phase.

Infraestrutura para a Ciência Aberta na Europa - OpenAIRE: O poder dos reposi...

EOSC-Pillar European Project

This document discusses the power of repositories as infrastructure for open science. It notes that individual repositories have value for their institutions, but that their true value lies in their potential for interconnection to create a unified network providing access to research results. This network requires open access content and interoperability between repositories. OpenAIRE is presented as working to realize this potential through services that support content enrichment, notifications to repositories of relevant research, and usage statistics. Funders are also integrating with OpenAIRE to help monitor open access compliance and the impact of research funding.

EUDAT Collaborative Data Infrastructure: Data Access and Re-use Service Area

EUDAT

The document summarizes services provided by EUDAT, a collaborative data infrastructure funded by the European Union. It describes EUDAT's B2ACCESS identity and access management service, which allows users to access EUDAT and other services using their existing credentials. It also summarizes EUDAT's B2FIND data discovery service, B2SHARE data sharing and preservation service, and B2DROP file sharing service. It outlines their key features and integration with each other. Future plans include further deployments, improved interoperability, and enhanced user experiences across EUDAT services.

Building Federated FAIR Data Spaces, Yann Le Franc, EOSC-Pillar

What's hot

2019-10-11 The value of FAIR data in health data networks - The Hyve - ELIXIR...

Open Research Data in Horizon 2020

Internal Data Monitoring in OGD and PSI

Bernhard Krabina

Bio Data World - The promise of FAIR data lakes - The Hyve - 20191204

ALIGNED Data Curation Methods and Tools

AlignedProject

Sshoc kick off meeting - Work Package 5 Pitch - Annette Scherpenzeel

SSHOC

The D4Science Infrastructure

e-ROSA

II-SDV 2016 Questel Intellixir

Biased Information Retrieval in Pharmaceutical Drug Development

ICIC 2017: New product presentation minesoft

II-SDV 2015, 20 - 21 April, in Nice

DataXDay Conference by Xebia

DataXDay - A data scientist journey to industrialization of machine learning

ICIC 2017: Publication Analysis and Publication Strategy

BDE SC3.3 Workshop - BDE review: Scope and Opportunities

Helix Nebula The Science Cloud

BlueBRIDGE: Major Achievements & future vision

Blue BRIDGE

Integrated Approach to Test Geospatial Information Resources Based on INSPIRE...

Martin Tuchyna

Ogi pilots-presentation-delft sarah-roberts

OpenGovIntelligence

The European Open Science Cloud

ICIC 2014 New Product Introduction BizInt

What's hot (19)

2019-10-11 The value of FAIR data in health data networks - The Hyve - ELIXIR...

Open Research Data in Horizon 2020

Internal Data Monitoring in OGD and PSI

Bio Data World - The promise of FAIR data lakes - The Hyve - 20191204

ALIGNED Data Curation Methods and Tools

Sshoc kick off meeting - Work Package 5 Pitch - Annette Scherpenzeel

The D4Science Infrastructure

II-SDV 2016 Questel Intellixir

Biased Information Retrieval in Pharmaceutical Drug Development

ICIC 2017: New product presentation minesoft

II-SDV 2015, 20 - 21 April, in Nice

DataXDay - A data scientist journey to industrialization of machine learning

ICIC 2017: Publication Analysis and Publication Strategy

BDE SC3.3 Workshop - BDE review: Scope and Opportunities

BlueBRIDGE: Major Achievements & future vision

Integrated Approach to Test Geospatial Information Resources Based on INSPIRE...

Ogi pilots-presentation-delft sarah-roberts

The European Open Science Cloud

ICIC 2014 New Product Introduction BizInt

Similar to Metadata catalogues survey results, EOSCpilot H2020 EU project

Infraestrutura para a Ciência Aberta na Europa - OpenAIRE: O poder dos reposi...

EOSC-Pillar European Project

EUDAT Collaborative Data Infrastructure: Data Access and Re-use Service Area

EUDAT

Building Federated FAIR Data Spaces, Yann Le Franc, EOSC-Pillar

OpenAIRE Monitoring Services - EC FP7 & H2020 and other national funders (pre...

SC4 Workshop 2: Soren Auer BDE project Overview

The document discusses the Big Data Europe project, which aims to address societal challenges through integrating big data, software, and communities. It outlines 7 societal challenge pilots focusing on domains like health, agriculture, energy, transport, climate, social sciences, and security. Each pilot instantiates the Big Data Europe architecture to address a specific problem, such as replicating an open pharmaceutical data platform, monitoring energy production units, analyzing climate simulation data, and detecting man-made changes from remote sensing images. The document also provides details on the Big Data Europe platform components and compares it to other Hadoop distributions.

Cloud Computing Needs for Earth Observation Data Analysis: EGI and EOSC-hub

Björn Backeberg

OpenAIRE provide dashboard #OpenAIREweek2020

Tag.bio: Self Service Data Mesh Platform

Sanjay Padhi, Ph.D

The global need to securely derive (instant) insights, have motivated data architectures from distributed storage, to data lakes, data warehouses and lake-houses. In this talk we describe Tag.bio, a next generation data mesh platform that embeds vital elements such as domain centricity/ownership, Data as Products, Self-serve architecture, with a federated computational layer. Tag.bio data products combine data sets, smart APIs, statistical and machine learning algorithms into decentralized data products for users to discover insights using FAIR Principles. Researchers can use its point and click (no-code) system to instantly perform analysis and share versioned, reproducible results. The platform combines a dynamic cohort builder with analysis protocols and applications (low-code) to drive complex analysis workflows. Applications within data products are fully customizable via R and Python plugins (pro-code), and the platform supports notebook based developer environments with individual workspaces. Join us for a talk/demo session on Tag.bio data mesh platform and learn how major pharma industries and university health systems are using this technology to promote value based healthcare, precision healthcare, find cures for disease, and promote collaboration (without explicitly moving data around). The talk also outlines Tag.bio secure data exchange features for real world evidence datasets, privacy centric data products (confidential computing) as well as integration with cloud services

Bde euro proworkshop

Delft University of Technology

The document describes the BigDataEurope project, which aims to lower barriers for using big data technologies across different societal domains. It provides a one-stop solution called the Big Data Integrator platform that allows flexible deployment of open source big and smart data management tools using Docker containers. The platform is demonstrated through 7 pilot use cases aligned with European Commission challenges. Workshops and webinars are held to engage stakeholders and show societal value. The project coordinates integration of tools for data acquisition, storage, processing, analytics and semantics.

Intact danish workshop_20171001

Dirk Pieper

Primers or Reminders? The Effects of Existing Review Comments on Code Review

SFScon21 - Simone Tritini - The Environmental Data Platform web portal

South Tyrol Free Software Conference

A helper for data scientists The EDP (Environmental Data Platform), manage by Center for Sensing Solutions of Eurac Research, is a compound of several open-source software and components for data and metadata management. In particular, it provides tools to (i) discover the types of data available, to (ii) process big datasets and to (iii) visualize them. The EDP encompasses openEO, JupyterHub, Maps (based on Geonode) and Geonetwork software, among others. The EDP portal is a web application which helps the viewer accessing and exploring the environmental data platform, acting as unique access point to the EDP platform. In more detail, the EDP portal has three main features: an intuitive data discovery interface, a dedicated data processing environment (for python and R scripting) and a comprehensive documentation repository.

Inspire2011 shibb am_fs_paper_v3

EDINA, University of Edinburgh

1. The document discusses using Shibboleth Access Management Federations as an organizational model for securing Spatial Data Infrastructures (SDIs) under INSPIRE. 2. Access Management Federations allow secure sharing of authentication information across administrative domains through a "circle of trust" and can provide single sign-on for cross-border applications to access protected geospatial resources. 3. The 12 attributes proposed in the paper argue that Access Management Federations based on open standards like SAML satisfy the security, privacy, and interoperability requirements for pan-European SDIs under INSPIRE.

OpenAIRE Infrastructure & Services: we need your input!

OpenAIRE provides open science services and infrastructure for researchers, content providers, funders, and other stakeholders. It operates a pan-European network of 34 nodes that provide training, support, and advice on open access policy alignment and technical assistance. OpenAIRE's digital infrastructure integrates over 23 million publications, 616,000 datasets, and links them to over 1 million projects funded by 15 funders. It provides dashboards, tools, and APIs to support the entire research lifecycle and aims to place open science on the agenda of all research organizations.

PaNOSC Overview - ExPaNDS kick-off meeting - September 2019

PaNOSC

OpenAIRE services and tools for Open Science

Helix Nebula The Science Cloud

OpenAIRE provides services and tools to support open science, including 34 national open access desks and technical services. It offers an infrastructure commons with linked publications, research data, CRIS systems, and other repositories. Key stakeholders can access services for research impact, project reporting, open access trends, and more. Researchers can search, browse, and deposit interlinked research outputs through OpenAIRE and get open access helpdesk support. Content providers benefit from repository validation, notifications, and analytics. The document outlines OpenAIRE's role in supporting open access and open data policies through guidelines, monitoring, and reporting services for funders.

HNSciCloud Overview

The document discusses the Helix Nebula Science Cloud (HNSciCloud) project. Key points: - HNSciCloud is a joint procurement by 10 research institutions to provide a common cloud platform for the European research community. - It aims to increase computing and storage capabilities for scientific data analysis through a hybrid cloud model combining procurers' data centers, commercial cloud providers, and high-speed networks. - The project has progressed through different phases including requirements analysis, prototype development, and pilots with two commercial providers to test cloud services for high-energy physics and other research workflows.

Access Control in ESDIN: Shibboleth

EDINA, University of Edinburgh

The document discusses access control for geospatial data using Shibboleth federated identity management. It summarizes work done in the ESDIN project to set up a prototype Shibboleth federation between national mapping agencies. It also describes an OGC interoperability experiment where several software vendors modified their OWS clients to work with Shibboleth single sign-on. The document concludes by discussing potential next steps, such as establishing an INSPIRE Shibboleth federation and holding a workshop at the INSPIRE conference.

Open Research Gateway for the ELIXIR-GR Infrastructure (Part 3)