Reinforcement learning for context-dependent control of emergency outbreaks o...EuFMD
The 2018 Open Session of the EuFMD Standing Technical Committee was held in Borgo Egnazia - Italy, 29-31 October 2018 . The session theme was on global vaccine security
The European Commission for the Control of Foot-and-Mouth Disease (EuFMD), one of FAO’s oldest Commissions, came into being on the 12th June 1954, with the pledge of the sixth founding member state to the principles of a coordinated and common action against Foot-and-mouth Disease.
Marine Species Distributions: From Data to Predictive ModelsSamuel Bosch
Presentation of my PhD as used at the public defence in June 2017.
Thesis outline:
Chapter 1: General Introduction
Chapter 2: Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases
Chapter 3: sdmpredictors: an R package for species distribution modelling predictor datasets
Chapter 4: In search of relevant predictors for marine species distribution modelling using the MarineSPEED benchmark dataset
Chapter 5: Spatio-temporal patterns of introduced seaweeds in European waters, a critical review
Chapter 6: A risk assessment of aquarium trade introductions of seaweed in European waters
Chapter 7: Modelling the past, present and future distribution of invasive seaweeds in Europe
Chapter 8: General discussion
Ecological Niche Modelling of Potential RVF Vector Mosquito Species and their...Nanyingi Mark
In Kenya, RVF outbreaks have occurred cyclically in 1996 to 2007. Characterizing RVF vector habitat requirements allows for the identification of areas at risk of viral amplification and transmission. Ecological niche models were developed using records of potential RVF Kenyan vector mosquito species to predict their habitat suitability range and to investigate possible geographical associations with RVF outbreak occurrence in Kenya in 2006 -2007. The contribution of different environmental variables to the niche models was also assessed. Suitable habitats for Culex pipiens, Culex univittatus, Culex quinquefasciatus and Culex zambaensis were widely distributed in the county stretching from the western to the coastal strip while ; Aedes quasiunivittatus, Aedes aegypti were concentrated in Eastern Kenya with occupations in Rift Valley, Central and the coastal areas. High precipitation variables showed the highest predictive power for aedes while length of dry months determined the Culex distribution. It would be important to investigate the contributions of ruminant host population and landscape variables. RVF outbreaks had a significantly higher probability to occur in habitats suitable for both Aedes and Culex species, providing circumstantial evidence that the potential distribution of these two species coincides geographically with the observed distribution of the disease.
Reinforcement learning for context-dependent control of emergency outbreaks o...EuFMD
The 2018 Open Session of the EuFMD Standing Technical Committee was held in Borgo Egnazia - Italy, 29-31 October 2018 . The session theme was on global vaccine security
The European Commission for the Control of Foot-and-Mouth Disease (EuFMD), one of FAO’s oldest Commissions, came into being on the 12th June 1954, with the pledge of the sixth founding member state to the principles of a coordinated and common action against Foot-and-mouth Disease.
Marine Species Distributions: From Data to Predictive ModelsSamuel Bosch
Presentation of my PhD as used at the public defence in June 2017.
Thesis outline:
Chapter 1: General Introduction
Chapter 2: Fishing for data and sorting the catch: assessing the data quality, completeness and fitness for use of data in marine biogeographic databases
Chapter 3: sdmpredictors: an R package for species distribution modelling predictor datasets
Chapter 4: In search of relevant predictors for marine species distribution modelling using the MarineSPEED benchmark dataset
Chapter 5: Spatio-temporal patterns of introduced seaweeds in European waters, a critical review
Chapter 6: A risk assessment of aquarium trade introductions of seaweed in European waters
Chapter 7: Modelling the past, present and future distribution of invasive seaweeds in Europe
Chapter 8: General discussion
Ecological Niche Modelling of Potential RVF Vector Mosquito Species and their...Nanyingi Mark
In Kenya, RVF outbreaks have occurred cyclically in 1996 to 2007. Characterizing RVF vector habitat requirements allows for the identification of areas at risk of viral amplification and transmission. Ecological niche models were developed using records of potential RVF Kenyan vector mosquito species to predict their habitat suitability range and to investigate possible geographical associations with RVF outbreak occurrence in Kenya in 2006 -2007. The contribution of different environmental variables to the niche models was also assessed. Suitable habitats for Culex pipiens, Culex univittatus, Culex quinquefasciatus and Culex zambaensis were widely distributed in the county stretching from the western to the coastal strip while ; Aedes quasiunivittatus, Aedes aegypti were concentrated in Eastern Kenya with occupations in Rift Valley, Central and the coastal areas. High precipitation variables showed the highest predictive power for aedes while length of dry months determined the Culex distribution. It would be important to investigate the contributions of ruminant host population and landscape variables. RVF outbreaks had a significantly higher probability to occur in habitats suitable for both Aedes and Culex species, providing circumstantial evidence that the potential distribution of these two species coincides geographically with the observed distribution of the disease.
Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sust...maranlar
Paper at the ACM Multimedia 2016 Brave New Ideas Session on Societal Impact of Multimedia Research:
Alexis Joly, Hervé Goëau, Julien Champ, Samuel Dufour-Kowalski, Henning Müller, and Pierre Bonnet. 2016. Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sustain our Planet. In Proceedings of the 2016 ACM on Multimedia Conference (MM '16). ACM, New York, NY, USA, 958-967.
Paper: https://hal-lirmm.ccsd.cnrs.fr/hal-01373762/document
Pl@ntNet app:
https://play.google.com/store/apps/details?id=org.plantnet&hl=en
Survey Design for Monitoring North American Native BeesSam Droege
This slide show was presented at the 2009 North American Pollinator Protection Campaign meetings in Washington D.C. It was designed to brief the participants about plans to develop a statistically relevant but inexpensive means of determining if our bees are declining. Details can be obtained from Sam Droege (sdroege@usgs.gov).
Persistence of Rift Valley fever virus in East AfricaILRI
Presentation by J. Gachohi, F. Hansen, B. Bett and P. Kitala at the 13th conference of the International Society of Veterinary Epidemiology and Economics, Maastricht, the Netherlands, 20-24 August 2012.
Dr. Amy Kinsley - Managing Complexity: Simplifying Assumptions of Foot-and-Mo...John Blue
Managing Complexity: Simplifying Assumptions of Foot-and-Mouth Disease Models for Swine - Dr. Amy Kinsley, College of Veterinary Medicine, University of Minnesota, from the 2017 Allen D. Leman Swine Conference, September 16-19, 2017, St. Paul, Minnesota, USA.
More presentations at http://www.swinecast.com/2017-leman-swine-conference-material
Modelling tick densities using VGI and machine learning (2016)Irene Garcia-Marti
Slides used during the guest lecture in the KIT & ITC course on "Using Geographic Information Systems in disease control programs". Link: https://www.kit.nl/health/training/using-geographic-information-systems-disease-control-programs-gis/
Session 06, Introduction to biodiversity sample-based data publishing at the ...Alberto González-Talaván
This presentation sets the basic principles for the publishing of biodiversity information coming from sampling efforts. It was first presented in the training event for GBIF Participant nodes part of the 22nd meeting of the GBIF Governing Board.
Slide deck developed and presented by L. Smirnova (Royal Museum for Central Africa - Belgium).
Saving Lives with Geospatial AI - Pycon Indonesia 2020Gramener
There’s a powerful way to fight dengue. Infect a mosquito with Wolbachia, release it in highly populated regions, and wait for it to infect all mosquitoes in the region.
But this process is expensive, and we need to release it in the most densely populated regions in a city.
And no one really knows what population density is at a 100m x 100m level.
Can we use satellite imagery and use this to identify building density?
Ensuring successful introduction of Wolbachia in natural populations of Aedes...FGV Brazil
The control of the spread of dengue fever by introduction of the intracellular parasitic bacterium Wolbachia in populations of the vector Aedes aegypti, is presently one of the most promising tools for eliminating dengue, in the absence of an efficient vaccine. The success of this operation requires locally careful planning to determine the adequate number of individuals carrying the wolbachia parasite that need to be introduced into the natural population. The introduced mosquitoes are expected to eventually replace the Wolbachia-free population and guarantee permanent protection against the transmission of dengue to human. In this study, we propose and analyze a model describing the fundamental aspects of the competition between mosquitoes carrying Wolbachia and mosquitoes free of the parasite. We then use feedback control techniques to devise an introduction protocol which is proved to guarantee that the population converges to a stable equilibrium where the totality of mosquitoes carry Wolbachia.
Date: 2015-03-19
Authors:
Bliman, Pierre-Alexandre
Soledad Aronna, Maria
Coelho, Flávio Codeço
Silva, Moacyr da
Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sust...maranlar
Paper at the ACM Multimedia 2016 Brave New Ideas Session on Societal Impact of Multimedia Research:
Alexis Joly, Hervé Goëau, Julien Champ, Samuel Dufour-Kowalski, Henning Müller, and Pierre Bonnet. 2016. Crowdsourcing Biodiversity Monitoring: How Sharing your Photo Stream can Sustain our Planet. In Proceedings of the 2016 ACM on Multimedia Conference (MM '16). ACM, New York, NY, USA, 958-967.
Paper: https://hal-lirmm.ccsd.cnrs.fr/hal-01373762/document
Pl@ntNet app:
https://play.google.com/store/apps/details?id=org.plantnet&hl=en
Survey Design for Monitoring North American Native BeesSam Droege
This slide show was presented at the 2009 North American Pollinator Protection Campaign meetings in Washington D.C. It was designed to brief the participants about plans to develop a statistically relevant but inexpensive means of determining if our bees are declining. Details can be obtained from Sam Droege (sdroege@usgs.gov).
Persistence of Rift Valley fever virus in East AfricaILRI
Presentation by J. Gachohi, F. Hansen, B. Bett and P. Kitala at the 13th conference of the International Society of Veterinary Epidemiology and Economics, Maastricht, the Netherlands, 20-24 August 2012.
Dr. Amy Kinsley - Managing Complexity: Simplifying Assumptions of Foot-and-Mo...John Blue
Managing Complexity: Simplifying Assumptions of Foot-and-Mouth Disease Models for Swine - Dr. Amy Kinsley, College of Veterinary Medicine, University of Minnesota, from the 2017 Allen D. Leman Swine Conference, September 16-19, 2017, St. Paul, Minnesota, USA.
More presentations at http://www.swinecast.com/2017-leman-swine-conference-material
Modelling tick densities using VGI and machine learning (2016)Irene Garcia-Marti
Slides used during the guest lecture in the KIT & ITC course on "Using Geographic Information Systems in disease control programs". Link: https://www.kit.nl/health/training/using-geographic-information-systems-disease-control-programs-gis/
Session 06, Introduction to biodiversity sample-based data publishing at the ...Alberto González-Talaván
This presentation sets the basic principles for the publishing of biodiversity information coming from sampling efforts. It was first presented in the training event for GBIF Participant nodes part of the 22nd meeting of the GBIF Governing Board.
Slide deck developed and presented by L. Smirnova (Royal Museum for Central Africa - Belgium).
Saving Lives with Geospatial AI - Pycon Indonesia 2020Gramener
There’s a powerful way to fight dengue. Infect a mosquito with Wolbachia, release it in highly populated regions, and wait for it to infect all mosquitoes in the region.
But this process is expensive, and we need to release it in the most densely populated regions in a city.
And no one really knows what population density is at a 100m x 100m level.
Can we use satellite imagery and use this to identify building density?
Ensuring successful introduction of Wolbachia in natural populations of Aedes...FGV Brazil
The control of the spread of dengue fever by introduction of the intracellular parasitic bacterium Wolbachia in populations of the vector Aedes aegypti, is presently one of the most promising tools for eliminating dengue, in the absence of an efficient vaccine. The success of this operation requires locally careful planning to determine the adequate number of individuals carrying the wolbachia parasite that need to be introduced into the natural population. The introduced mosquitoes are expected to eventually replace the Wolbachia-free population and guarantee permanent protection against the transmission of dengue to human. In this study, we propose and analyze a model describing the fundamental aspects of the competition between mosquitoes carrying Wolbachia and mosquitoes free of the parasite. We then use feedback control techniques to devise an introduction protocol which is proved to guarantee that the population converges to a stable equilibrium where the totality of mosquitoes carry Wolbachia.
Date: 2015-03-19
Authors:
Bliman, Pierre-Alexandre
Soledad Aronna, Maria
Coelho, Flávio Codeço
Silva, Moacyr da
ECOL203403 – Ecology Populations to Ecosystems Assignment .docxbudabrooks46239
ECOL203/403 – Ecology: Populations to Ecosystems
Assignment 2: Predator-Prey Interactions
T1 2020
Figure 0. Tarantula Theraphosa blondi pulling a captured giant earthworm (presumably
Rhinodrilus sp.) into its burrow in rainforest in French Guiana. Photo by C.E. Timothy Paine. Find
more information about earthworm-eating tarantulas in Nyffler et. al. 2017. Journal of
Arachnology 45:242–247.
Objective
The purpose of this assignment is for you to run a manipulative experiment using
a realistic predator-prey model. In so doing, you will
1. explore how predators affect prey populations and vice versa
2. explore the linkages between ecological processes and their
representations in models
3. design and execute an ecological experiment
Introduction
This assignment demonstrates how the actions of individuals compound to
generate population dynamics. We know that all populations can grow
exponentially, and we also know that never occurs for long, as the resources
available to populations eventually restrict their growth. In this practical, you will
explore how and when this occurs. You will further explore conditions under
which more complicated – and even interesting – population dynamics occur.
In simple models, one could assume that all predators had access to all prey at
all times. In reality, however, populations have spatial structure, because
individuals are located at specific locations in space. This has several effects on
their ecology. First, an individual’s spatial location restricts the set of individuals
that it can interact with to be those in its local neighborhood. Second, space
(together with the sensory organs of the organism in question) affects the
detectability of predators and prey. Third, heterogeneity in the spatial distribution
of resource availability, refuges, mates, and abiotic conditions (etc) can strongly
influence ecological processes. Finally, the viscosity (or ‘thickness’) of the
environment, together with the dispersal abilities of the organism, affects how
quickly they can move through space. All of these factors influence ecological
interactions among organisms. A final consideration is the dimensionality of
space. For terrestrial organisms, the world is (to a first approximation) flat,
whereas for aquatic, marine or airborne organisms it is three-dimensional. In the
sky, a predator may be above you. In water, predators may lurk above or below
you. In this model, we assume that the predators and prey exist in a flat (two-
dimensional) homogeneous field.
Modeling platform
You will use a modeling platform, NetLogo, in which the spatially explicit two-
species model has been developed. NetLogo is a multi-agent programmable
modeling environment used by tens of thousands of students, teachers and
researchers worldwide. Models are written in the NetLogo language, which
provides a graphical user interface for users.
Description of model
ARENA: You will si.
ECOL203403 – Ecology Populations to Ecosystems Assignment .docxtidwellveronique
ECOL203/403 – Ecology: Populations to Ecosystems
Assignment 2: Predator-Prey Interactions
T1 2020
Figure 0. Tarantula Theraphosa blondi pulling a captured giant earthworm (presumably
Rhinodrilus sp.) into its burrow in rainforest in French Guiana. Photo by C.E. Timothy Paine. Find
more information about earthworm-eating tarantulas in Nyffler et. al. 2017. Journal of
Arachnology 45:242–247.
Objective
The purpose of this assignment is for you to run a manipulative experiment using
a realistic predator-prey model. In so doing, you will
1. explore how predators affect prey populations and vice versa
2. explore the linkages between ecological processes and their
representations in models
3. design and execute an ecological experiment
Introduction
This assignment demonstrates how the actions of individuals compound to
generate population dynamics. We know that all populations can grow
exponentially, and we also know that never occurs for long, as the resources
available to populations eventually restrict their growth. In this practical, you will
explore how and when this occurs. You will further explore conditions under
which more complicated – and even interesting – population dynamics occur.
In simple models, one could assume that all predators had access to all prey at
all times. In reality, however, populations have spatial structure, because
individuals are located at specific locations in space. This has several effects on
their ecology. First, an individual’s spatial location restricts the set of individuals
that it can interact with to be those in its local neighborhood. Second, space
(together with the sensory organs of the organism in question) affects the
detectability of predators and prey. Third, heterogeneity in the spatial distribution
of resource availability, refuges, mates, and abiotic conditions (etc) can strongly
influence ecological processes. Finally, the viscosity (or ‘thickness’) of the
environment, together with the dispersal abilities of the organism, affects how
quickly they can move through space. All of these factors influence ecological
interactions among organisms. A final consideration is the dimensionality of
space. For terrestrial organisms, the world is (to a first approximation) flat,
whereas for aquatic, marine or airborne organisms it is three-dimensional. In the
sky, a predator may be above you. In water, predators may lurk above or below
you. In this model, we assume that the predators and prey exist in a flat (two-
dimensional) homogeneous field.
Modeling platform
You will use a modeling platform, NetLogo, in which the spatially explicit two-
species model has been developed. NetLogo is a multi-agent programmable
modeling environment used by tens of thousands of students, teachers and
researchers worldwide. Models are written in the NetLogo language, which
provides a graphical user interface for users.
Description of model
ARENA: You will si.
Evolution of North American MicruracarusRachel Shoop
My research focuses on the evolution of North American water mites in the genus Arrenurus, Subgenus Micruracarus. In this presentation, I discuss why I chose to study these little known critters, and present some preliminary findings. Please contact me for more info.
This slideshow was created for the VCE Environmental Science Online Course, Unit 3: Biodiversity. It explains different methods of assessing biodiversity and discusses several indices for measurement.
KUKUNIN PO NAMIN ITO DAHIL KAILANGAN NG DATOS YUNG PAGSULAT NAMIN AT ANG PAGHANAP NAMIN NG PAKSA SANA PO AY MAINTINDIHAN NIYO IMPORTANTE PO KASI TRHYEAGFCGCXFSXSSSSSSSSSSXZVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVVFDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFTJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFEREEEEEEEEEAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAERHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Cobb, Seltmann, Franz. 2014. The Current State of Arthropod Biodiversity Data...taxonbytes
Cobb et al. 2014. The Current State of Arthropod Biodiversity Data: Addressing Impacts of Global Change. Presented at https://www.idigbio.org/content/collections-21st-century-symposium Program available at https://www.idigbio.org/wiki/index.php/Collections_for_the_21st_Century
The regulation of ant colony foraging activity without spatial information
merged_document_4
1. Rebecca Wang and Victoria Sunkel
The Effects of microhabitat and predator density on nesting success in Northern
Mockingbirds.
A study focused on obtaining more information on how microhabitats and predator densities at
Northern Mockingbird nesting sites impact reproductive success.
Background:
The subject of our proposed study is the Northern Mockingbird (Mimus polyglottos).
In this study, we will analyze the nesting habitats and success of the Northern Mockingbird
found commonly throughout the city. Being the only species of mockingbird commonly found in
North America, it is culturally treasured and new information about the species ecology in urban
areas is valuable for it’s conservation
Free-ranging domestic cats are estimated to kill 1.3-4.0 billion birds annually (Loss et al.
2013). Besides cats, Northern mockingbird nests may face predation threat from several species
of other predators including various species of owls and hawks as well. The frequency of
predation by each animal remains unknown, as does the respective methods of predation by each
species. Victoria’s focus will be on determining the density of different nest predators in
different neighborhoods (Bywater, Lakeview, and Uptown), and the frequency of predation on
mockingbird nests.
As well as the presence of predators, urbanization disrupts and fragments habitats, which
can negatively impact breeding success in many species (Chamberlain et al. 2009). However,
urban adaptive birds like the Northern mockingbird can thrive in urban settings, and we predict
this is due to their use of high quality microhabitats. Patches of better quality habitat can exist
within densely urbanized areas and birds can utilize these areas for breeding and foraging
(Melles et al. 2003) Their use of good microhabitat can also affect their vulnerability to urban
predators; as such we need to examine these factors together to understand their impact on
breeding success. Rebecca’s focus will be on assessing the importance of microhabitats and how
they interact with predator density to affect nesting success.
Topic 1: (Victoria)
Objective 1: Determine the density of different predators across the city.
Methods: In order to determine which of the above stated nest predators (Cats, Owls,
Hawks, Snakes and Squirrels) is the most abundant in each neighborhood studied, we
will rely on a visual census. Transect surveys though out the neighborhoods will be
conducted several times with the numbers of each predator seen and their distance from
the transect recorded. As predators further from the line will have lower probability of
detection, this will be accounted for in the estimate when determining the common
predator in each neighborhood.
Objective 2: Determine which predator most commonly attacks mockingbird nests.
Methods: In order to accomplish this objective, we will set camouflaged cameras, close
enough to view activity of each nest. The camouflage will prevent the birds from reacting
to the novel presence of the camera. When first found, the location and structure of the
nest will be measured. Twice a week, the nests will be checked on to see their status. If a
2. nest is found to be empty, the camera will be removed and checked to find out the final
outcome of the nest. If the nest was predated, the type of predator and how they
approached will be recorded. We will also be able to determine if the nest failure was a
result of weather or human interference. The total number of attacks and strategy of
predation by each predator will be recorded. Any nest that has sustained the duration of
the study will be quantified and compared between areas of different predator density.
These observations will be used to find a common factor in the placement or building of
nests that increases their likelihood of survival.
Topic 2: (Rebecca)
Objective 1: How does abundance of domestic predators (cats) vary among three distinct New
Orleans neighborhoods (Uptown, Lakeview, and Bywater)?
Predictions: I predict a higher presence and abundance of domestic predators (cats) in
the Uptown area of New Orleans because houses are raised, providing a place to live, and
because my own anecdotal observations suggest that more home owners have cats as
pets.
Methods:
• To better understand the urban environment of the Northern Mockingbirds and
their vulnerability to domestic predators, transect surveys in conjunction with
Victoria’s methods will be conducted throughout the 3 neighborhoods (Uptown,
Lakeview, and Bywater) included in this study. These transect samples would
involve walking a set route at a set pace and counting all the cats seen. Using this
data, we can then estimate the population.
• Each transect will be walked at a slow, steady place (1.5-3 mph) and may last
between 60-120 minutes depending on the length of the transect and number of
cats observed. All transects are to be completed in the morning times between
sunrise and 11AM. At the start of each transect, temperature and weather
conditions will be recorded. On rainy days, transects surveys will not be
conducted.
• If a cat is spotted, we will record the time and location, and place a pin on the
Easy GPS application in which the lateral and longitudinal coordinates will be
recorded.
• Because of the limitations with conducting transect surveys during the daytime
due to the fact that cats are nocturnal, video footage of predator activity near
nesting sites will be captured at or nearby the nest sites.
Objective 2: Microhabitats of nesting sites: What are the environmental conditions of
Northern mockingbirds in areas of high and low lead concentrations? What are environmental
factors besides lead contamination present in sampling sites that may also affect Northern
mockingbird physiology or behavioral aggression?
Predictions: I predict a more natural habitat in Lakeview where the housing density is
lower and there is more green space relative to areas like the Bywater and Uptown. I
predict that more natural habitat will result in greater nesting success in Northern
Mockingbirds.
Methods:
3. • soil quality tests, proximity to houses measured by meter tape.
• Randomly select n= 30 nesting sites from each neighborhood from which to
collect data on microhabitat and create a 15 m radial plot from a center point.
• Record percent foliage cover at ground level, eye-level (~2 m), and 15 m above
the ground.
• Number of trees, shrubs, and telephone poles within the 15 m radial plot as well
as the number of cars and people that passed in a 5-minute period recorded in
Excel File to estimate disturbance.
• In residential areas record the number of stories, width of lot, and the number of
trees and shrubs on the property.
Objective 3: What is the relative impact of predator presence/abundance and microhabitat
on mockingbird nesting success?
Methods:
• My coworkers and I will find at least 15 active nests in each of the 3 neighborhoods.
We will monitor the nests via visits every 3-4 days.
• At a subset of these nests, we will set up camera traps. This will allow us to quantify
parental provisioning of young and, more important, the source of nest failure (ie,
we will be able to record if and when the nest is predated by a potential predator
such as a cat).
• 9 camera traps will allow me to rotate 3 camera traps in each neighborhood, so that
over the course of the breeding season I can get data on 15 nests per neighborhood.
• Data collected from the aforementioned methods can be coupled with data on
mockingbird densities based on nesting sites, nest size, and number of adult or
juvenile birds in each neighborhood in order to understand if there is a correlation
between mockingbird densities and presence/abundance of domestic predators.
• Risk of nest predation can be assessed through mounted motion sense cameras
mounted at eye level or 1m above nests. Other interested project participants and I
will review the footage in order to determine the extent of nest predation by
domestic cats.
Newcomb Mission (Rebecca)
I am personally and deeply committed to Newcomb mission of empowering women by
integrating teaching, research, and community engagement at Tulane University. This year, I
have participated in Tulane’s Girls in STEM event, which involves professors, graduate students,
and undergraduate students from a range of STEM fields who all come together to host a fun day
of science workshops designed to inspire middle school girls from around the New Orleans area
to pursue a career in the male –dominated STEM fields. This past semester, I helped to
demonstrate water quality testing through my service-learning course at a welcome table at the
event. My partners and I showed the girls how to perform a dissolved oxygen test, clarity test,
pH test, and temperature readings. My female professors that I’ve had in the past or for whom I
volunteer in the lab are all deeply committed to Girls in STEM and all lead workshops on the day
of. This semester I’ll be heading another welcome table for etymology where the students will be
4. able to observe firsthand the biodiversity showcased in the insect collections of students from Dr.
Vanbael’s Insect Biology and Etymology classes.
Budget
Camera traps (10 units @ $130/unit) $1,300
Memory cards (10 units @ $12/unit) $120
Cable locks (10x @ $10/unit) $100
Battery charger (2x @ $20/unit) $ 40
Rechargeable batteries (2x 20 packs @ 32.99/unit) $65.98
Fuel to sites (50 trips @ $4 per trip) $200
TOTAL: $1825.98
References:
Chamberlain, D. E., Cannon, A. R., Toms, M. P., Leech, D. I., Hatchwell, B. J., & Gaston, K. J.
(2009). Avian productivity in urban landscapes: a review and meta‐analysis. Ibis, 151(1),
1-18.
Melles, S. , Glenn, S. & Martin, K. (2003) Urban bird diversity and landscape complexity:
species-environment associations along a multiscale habitat gradient. Conservation
Ecology, 7, 5.
Loss, S. R., Will, T., & Marra, P. P. (2013). The impact of free-ranging domestic cats on wildlife
of the United States. Nature communications, 4, 1396.
5. Fall Session: Funds available for spring or summer 2016. Deadline to submit: October 30, 2015.
Spring Session: Funds available for summer or fall 2016. Deadline to submit: March 4, 2016.
Name Email
Campus (local) address Phone
Permanent mailing address
Current class freshman sophomore junior senior 4+1
(You must be enrolled full-time in Newcomb-Tulane College during the semester you are funded)
Major(s) Minor
Faculty Sponsor Department
Project title and description of 50 words or less summary
Total requested from Newcomb Grants Program $ (should match amount from your proposed budget)
Will you be traveling internationally? To where?
Please read the Guidelines for Student Grant Proposals on our website and become familiar with IRB and CITI course
requirements if applicable before submitting your proposal packet.
The proposal packet should include:
1.! This form
2.! Faculty sponsor approval form
3.! A detailed description of the project, including a timeline and discussion of the significance of the project to the
Newcomb College Institute’s mission. (2-3 pages)
4.! Budget worksheet (from the NCI website)
5.! One-page resumé.
Application package should be emailed, preferably as one pdf document, to lwolford@tulane.edu.
Victoria Sunkel vsunkel@tulane.edu
31 Macalister 847 922 7865
1121 Vernon Drive
Evolutionary Biology and Ecology Spanish and Psychology
Jordan Karubian Ebio
Mockingbird nesting and Predation Habits
1550
no
6. Faculty sponsor must be a Newcomb Fellow
Deadline for student to submit application packet is October 30, 2015 for Fall cycle and March 4, 2016 for Spring cycle.
Student Department
Faculty sponsor Department
Sponsor’s email Phone
Title of project
Describe the extent and nature of the student’s involvement in her project
What is the probability of completion/success?
If the project is part of your research, describe the ways in which her request is related to the larger project and its funding.
NOTE: You must be a Newcomb Fellow to be a faculty sponsor and should be sufficiently familiar with the student and her
work to agree that this project is viable and has a good chance of completion. The faculty sponsor agrees to assist the student
with the IRB procedure and with the CITI course requirements of Tulane University if applicable to this project.
Faculty sponsor signature Date
Faculty sponsor should return this form to the student.
504-865-5549
research project in coordination with a group of other students under my supervison.
jk@tulane.edu
Victoria will be conducting a semester long
Ecology & Evol. Bio
Jordan Karubain
Victoria Sunkel
EE Biology
The effect of predator density on Northern Mockingbird nesting success.
Dr. Ribeiro and I have conducted research on how lead and habit impact adult condition and breeding.
Very high - all methods have successfully been used in my lab
This research question adds to this previous work. We do not have any funding for it.
and mockingbirds are very common in New Orleans
3/1/16
7. Fall Session: Funds available for spring or summer 2016. Deadline to submit: October 30, 2015.
Spring Session: Funds available for summer or fall 2016. Deadline to submit: March 4, 2016.
Name Email
Campus (local) address Phone
Permanent mailing address
Current class freshman sophomore junior senior 4+1
(You must be enrolled full-time in Newcomb-Tulane College during the semester you are funded)
Major(s) Minor
Faculty Sponsor Department
Project title and description of 50 words or less summary
Total requested from Newcomb Grants Program $ (should match amount from your proposed budget)
Will you be traveling internationally? To where?
Please read the Guidelines for Student Grant Proposals on our website and become familiar with IRB and CITI course
requirements if applicable before submitting your proposal packet.
The proposal packet should include:
1.! This form
2.! Faculty sponsor approval form
3.! A detailed description of the project, including a timeline and discussion of the significance of the project to the
Newcomb College Institute’s mission. (2-3 pages)
4.! Budget worksheet (from the NCI website)
5.! One-page resumé.
Application package should be emailed, preferably as one pdf document, to lwolford@tulane.edu.
8. Faculty sponsor must be a Newcomb Fellow
Deadline for student to submit application packet is October 30, 2015 for Fall cycle and March 4, 2016 for Spring cycle.
Student Department
Faculty sponsor Department
Sponsor’s email Phone
Title of project
Describe the extent and nature of the student’s involvement in her project
What is the probability of completion/success?
If the project is part of your research, describe the ways in which her request is related to the larger project and its funding.
NOTE: You must be a Newcomb Fellow to be a faculty sponsor and should be sufficiently familiar with the student and her
work to agree that this project is viable and has a good chance of completion. The faculty sponsor agrees to assist the student
with the IRB procedure and with the CITI course requirements of Tulane University if applicable to this project.
Faculty sponsor signature Date
Faculty sponsor should return this form to the student.
11. Rebecca S. Wang
2411 Jay St. New Orleans, LA 70122
(504) 406-7262 rwang7@tulane.edu
Education
B.S. Environmental Biology, Tulane University expected May 2018
Benjamin Franklin High School graduated, 2014
Research Experience
Fall 2015-present
• Volunteer in microbial ecology laboratory at Tulane university
- Assisted on fungal endophyte study based on samples collected in Panama; Learned sterile
tissue technique; Attended lab meetings; Assisted in tree planting at Hebert Center
Winter 2015 (Dec. 20 – Jan. 10)
• Assistant to Ongoing Research at Tulane University
- New Orleans Rat Project
- Part of Rat Team - Making bait and trap setting (Tomahawk and Sherman traps)
- Rat and mice necropsies: collected lung, liver, kidney, urine, and blood samples used for
screening of pathogens; tails for DNA; dissected lungs to collect parasites
Summer 2015
• Assistant to Ongoing Research at Tulane University
- U.S. Forestry Service Urban Ecology Project with Tulane University
- Part of Vegetation/Forestry Team; field days twice a week which involved driving to USFS
designated plots located in different neighborhoods of New Orleans and recording data from
vegetation plots (plant species, percent coverage, etc) and tree measurements (DBH, Crown to
base, width NS and WE, percent dieback, percent missing, etc.).
Summer 2013
• Independent Research Project: Programmed Cell Death of Cultured A549 Lung Epithelial Cells
Induced by Exposure to Sodium Arsenite Exposure
- 3rd
place at Benjamin Franklin High School Science Fair
- 2nd
place at Greater New Orleans Science and Engineering Fair
- 4th
place at Louisiana Science and Engineering Fair (January 2014)
Activities and Extracurriculars
Tulane University
Tulane University Vietnamese Association
Public Relations Officer (Spring 2015-present)
Bridging Generations at Tulane University
Cofounder; Vice President
Project Coordinator designated to Poydras Home
Classical Piano
- Piano lessons; studied with Faina Lushtak (Fall 2014-Fall 2015); studying with Daniel
Weilbaecher (Spring 2016)
Volunteer Work
Mission Trip to Honduras (Winter 2014): Visited villages in Sierra del Merendón, tiled floor of medical
clinic, attended mass with residents, community outreach – visited homes in village, played with children there,
portioned clothing and toy donations to each village visited
Animal Rescue New Orleans (Summer 2015)
Volunteer in Dr. Vanbael lab
Awards and Honors
Platzer Award of Artistic Excellence $300 awarded by the Junior Philharmonic Society of New Orleans
(2013)
Tulane Musicianship Award (2014-2016): $5,000 per year
12. VICTORIA SUNKEL
1121 Vernon Drive Glenview, IL 60025
(847) 922-7865
EDUCATION
2014-Present TULANE UNIVERSITY New Orleans, LA
Candidate for Master of Ecology and Evolutionary Biology, Spring
2019
Candidate for Graduation, spring 2018
Majors in Ecology and Evolutionary Biology
Member, Pi Beta Phi, Green Club
2010-2014 GLENBROOK SOUTH HIGHSCHOOL Glenview, IL
Graduated June 2014
National Honors Society, Academic Athletic Excellence Award
EXPERIENCE
2015-Present REFUGIO DEL GAVILÁN Ecuador
Social Media Volunteer
• Researched animals native to the area to create a brochure
• Spread awareness by posting on social media
2013- Present RIVER TRAILS NATURE CENTER Glenview, IL
Animal Care Volunteer
• Oversaw well being of animals including feeding, training,
cleaning, and playtime
• Maintained the landscape of natural plants inside and outside
• Educated visitors on the animals and environment
2013-2015 HEARTLAND ANIMAL SHELTER Northbrook, IL
Cat Room Volunteer
• Click here to insert details regarding position
Summer 2012 YELLOWSTONE AND CALAVASES NATIONAL PARKS California
Forest Work Volunteer
• Repaired and cleaned areas of both parks on a week long
service trip
ADDITIONAL DATA
Languages: Spanish
Computer: Knowledge of Mac and PC
LNT Certified