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ELENA MARTÍN-GONZÁLEZ,UNIVERSIDAD DEVALLADOLID
RODRIGO DE-LUIS-GARCÍA,UNIVERSIDAD DEVALLADOLID
J.P. CASASECA-DE-LA-HIGUERA, UNIVERSIDAD DEVALLADOLID
J.R. GARMENDIA-LEIZA, COMPLEJOASISTENCIAL UNIVERSITARIO DE PALENCIA
J.ANDRÉS-DE-LLANO, COMPLEJOASISTENCIAL UNIVERSITARIO DE PALENCIA
CARLOS ALBEROLA-LÓPEZ, UNIVERSIDAD DEVALLADOLID
MAPPING RAW ACCELERATION DATA ON ACTIGRAPH
COUNTS:A MACHINE LEARNING APPROACH
Salamanca, October 2018
 Actimetry is a valuable tool for the objective diagnosis and the monitoring of different pathologies
 There are different types of actimeters in the market
26/10/2018 2ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
 A mapping must be found between data recorded with an approved clinical diagnostic actimeter
(counts) and acceleration data recorded with a commercial actimeter
Goal
Map raw acceleration data from a commercial actimeter
on ActiGraph counts, using a machine learning approach.
Is it possible to use commercial devices, not approved for medical
use, to obtain information that has some clinical relevance ?
MOTIVATION
 12 healthy volunteers (5 women, 7 men; 15-56 years)
 Both actimeters on the wrist of their non-dominant hand
 Records between 13 and 83 min (walking and spontaneous physical activity)
 MSB data: in-house mobile application
 Raw data: 31.25Hz
 ACT data:Actilife software
 Raw data: 30Hz
 Counts: 1s
26/10/2018 3ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
MATERIALS
ActiGraph wGT3X-BT Microsoft Band 2 Smartband
26/10/2018 4ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
Step 1. Preprocessing: resampling and alignment
Step 2. Correspondence between MSB raw data and ACT counts
Step 3.Approximation machine learning neural networks
 Train different architectures of neural networks
METHODS
CONFIGURATIONS
One hidden layer (7 networks)
[10 – 70; 10] neurons
Two hidden layers (16 networks)
[10 – 40; 10] neurons
[2 – 8; 2] neurons
1
2
1
Scheme
ො𝑥 ≃ 𝑔(𝒚)
RESULTS (I)
26/10/2018 5ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
Neural network with 1 hidden layer
10 neurons
Correlation coefficient: 0.893005
Slope: 45.01º
95.13% of the differences are within the 95
per cent confidence interval
RESULTS (II)
26/10/2018 6ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
Correlation coefficient: 0.899548
Slope: 44.98º
95.11% of the differences are within the 95
per cent confidence interval
Neural network with 2 hidden layers
10, 6 neurons
 It is possible to approximate the function that provides counts from the MSB acceleration RD
 Any actimeter available in the market (even if it does not have validity in clinical diagnosis).
 Use of these actimeters in studies of the matter, given that these devices are available on the market to
the general public, not only limited to physicians and researchers
 Limitations:
 The database of MSB records has a small amount of subjects
 The brevity of the records
 Future work:
 Extend the database
 Test other machine learning, such as random forests or deep learning
26/10/2018 7ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
CONCLUSIONS
 Simultaneous records from ACT and MSB actimeters
 Preprocessing
 Correspondence between MSB raw data and ACT counts
 Function approximation machine learning neural networks
 Train
 Test
 We can approximate the function that provides counts from the MSB acceleration RD
 This fact favors the use of these actimeters in studies of the matter, given that these devices are available
on the market to the general public, not only limited to physicians and researchers
26/10/2018 8ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA
SUMMARY
Goal
Map raw acceleration data from a commercial actimeter
on ActiGraph counts, using a machine learning approach.
ELENA MARTÍN-GONZÁLEZ, UNIVERSIDAD DEVALLADOLID
emargon@lpi.tel.uva.es
THANKYOU FOR LISTENING
MAPPING RAW ACCELERATION DATA ON ACTIGRAPH
COUNTS:A MACHINE LEARNING APPROACH
Salamanca, October 2018

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Mapping Raw Acceleration Data on ActiGraph Counts: A Machine Learning Approach

  • 1. ELENA MARTÍN-GONZÁLEZ,UNIVERSIDAD DEVALLADOLID RODRIGO DE-LUIS-GARCÍA,UNIVERSIDAD DEVALLADOLID J.P. CASASECA-DE-LA-HIGUERA, UNIVERSIDAD DEVALLADOLID J.R. GARMENDIA-LEIZA, COMPLEJOASISTENCIAL UNIVERSITARIO DE PALENCIA J.ANDRÉS-DE-LLANO, COMPLEJOASISTENCIAL UNIVERSITARIO DE PALENCIA CARLOS ALBEROLA-LÓPEZ, UNIVERSIDAD DEVALLADOLID MAPPING RAW ACCELERATION DATA ON ACTIGRAPH COUNTS:A MACHINE LEARNING APPROACH Salamanca, October 2018
  • 2.  Actimetry is a valuable tool for the objective diagnosis and the monitoring of different pathologies  There are different types of actimeters in the market 26/10/2018 2ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA  A mapping must be found between data recorded with an approved clinical diagnostic actimeter (counts) and acceleration data recorded with a commercial actimeter Goal Map raw acceleration data from a commercial actimeter on ActiGraph counts, using a machine learning approach. Is it possible to use commercial devices, not approved for medical use, to obtain information that has some clinical relevance ? MOTIVATION
  • 3.  12 healthy volunteers (5 women, 7 men; 15-56 years)  Both actimeters on the wrist of their non-dominant hand  Records between 13 and 83 min (walking and spontaneous physical activity)  MSB data: in-house mobile application  Raw data: 31.25Hz  ACT data:Actilife software  Raw data: 30Hz  Counts: 1s 26/10/2018 3ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA MATERIALS ActiGraph wGT3X-BT Microsoft Band 2 Smartband
  • 4. 26/10/2018 4ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA Step 1. Preprocessing: resampling and alignment Step 2. Correspondence between MSB raw data and ACT counts Step 3.Approximation machine learning neural networks  Train different architectures of neural networks METHODS CONFIGURATIONS One hidden layer (7 networks) [10 – 70; 10] neurons Two hidden layers (16 networks) [10 – 40; 10] neurons [2 – 8; 2] neurons 1 2 1 Scheme ො𝑥 ≃ 𝑔(𝒚)
  • 5. RESULTS (I) 26/10/2018 5ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA Neural network with 1 hidden layer 10 neurons Correlation coefficient: 0.893005 Slope: 45.01º 95.13% of the differences are within the 95 per cent confidence interval
  • 6. RESULTS (II) 26/10/2018 6ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA Correlation coefficient: 0.899548 Slope: 44.98º 95.11% of the differences are within the 95 per cent confidence interval Neural network with 2 hidden layers 10, 6 neurons
  • 7.  It is possible to approximate the function that provides counts from the MSB acceleration RD  Any actimeter available in the market (even if it does not have validity in clinical diagnosis).  Use of these actimeters in studies of the matter, given that these devices are available on the market to the general public, not only limited to physicians and researchers  Limitations:  The database of MSB records has a small amount of subjects  The brevity of the records  Future work:  Extend the database  Test other machine learning, such as random forests or deep learning 26/10/2018 7ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA CONCLUSIONS
  • 8.  Simultaneous records from ACT and MSB actimeters  Preprocessing  Correspondence between MSB raw data and ACT counts  Function approximation machine learning neural networks  Train  Test  We can approximate the function that provides counts from the MSB acceleration RD  This fact favors the use of these actimeters in studies of the matter, given that these devices are available on the market to the general public, not only limited to physicians and researchers 26/10/2018 8ELENA MARTÍN GONZÁLEZ | TEEM 2018, SALAMANCA SUMMARY Goal Map raw acceleration data from a commercial actimeter on ActiGraph counts, using a machine learning approach.
  • 9. ELENA MARTÍN-GONZÁLEZ, UNIVERSIDAD DEVALLADOLID emargon@lpi.tel.uva.es THANKYOU FOR LISTENING MAPPING RAW ACCELERATION DATA ON ACTIGRAPH COUNTS:A MACHINE LEARNING APPROACH Salamanca, October 2018