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Machine learning in medicine:
calm down
Ben Van Calster
Department of Development and Regeneration, KU Leuven (B)
Department of Biomedical Data Sciences, LUMC (NL)
Research Ethics Committee, University Hospitals Leuven (B)
Epi-Centre, KU Leuven (B)
Innsbruck, November 8th, 2019
I’m calm
2
No holy grail
3Indiana Jones and the Last Crusade, 1989.
Contents
• What are we talking about? AI, ML, and its applications
• ML instead of traditional statistics: success guaranteed?
• Typical applications of ML in medicine
• Ten concerns for model development, validation and implementation
• Beyond the hype
4
What are we talking about?
5
Artificial intelligence (AI)
6
Attributed to John McCarthy (Stanford) in 1955:
“Every aspect of learning or intelligence can in principle
be so precisely described that a machine can be made
to simulate it.”
Russell and Norvig (2010):
- Think like a human
- Act like a human
- Think rationally
- Act rationally
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
McCarthy et al. A proposal for the Dartmouth summer research project on artificial intelligence, 1955. URL http://www-formal.stanford.edu/jmc/history/dartmouth/dartmouth.html.
https://www.independent.co.uk/news/obituaries/john-mccarthy-computer-scientist-known-as-the-father-of-ai-6255307.html
Russell & Norvig. Artificial Intelligence: A Modern Approach (3rd ed). New Jersey: Prentice Hall, 2010.
Machine learning
7
Branch of AI, term attributed to Arthur Lee Samuel (IBM) in 1959.
Wikipedia (sorry):
Algorithms are developed to perform a specific task without using explicit instructions, relying
on patterns and inference instead.
Shillan et al (2019): form of AI in which a model learns from examples rather then pre-
programmed rules.
History-computer.com
Shillan et al. Crit Care 2019;23:284.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Gaming
8https://www.trendhunter.com/trends/hello-neighbor
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Gaming
9https://towardsdatascience.com/using-deep-learning-to-improve-fifa-18-graphics-529ec44ea37e
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Speech recognition (e.g. Siri, Bixby)
10https://focalcode.com/blog/10-real-world-examples-of-machine-learning-and-ai-2018-2/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Credit card fraud
11https://www.slideshare.net/dalpozz/adaptive-machine-learning-for-credit-card-fraud-detection
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Shoplifting
12https://newatlas.com/vaak-vaakeye-ai-theft-detection/59263/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Non-exhaustive list
13
Gaming
Natural Language Processing (Siri etc)
Fraud detection
Shoplifting
Object recognition (e.g. for driverless cars)
Facial recognition
Traffic analysis and predictions (e.g. Waze app)
Electrical load forecasting
(Social) media and advertising (people you may know, movie suggestions, …)
Spam filtering
Search engines (e.g. Google PageRank)
Handwriting recognition
Also less positive applications, such as ‘deepfake’ adult movies
And… medicine and healthcare
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine learning in medicine: overview
14Intellspot.com
Input and
output data
Input
data
PREDICTION PATTERNS
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Popularity skyrocketing
15Search on https://www.ncbi.nlm.nih.gov/pubmed/ on (performed Oct 18, 2019)
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Funding
16
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Start-ups
17https://medicalstartups.org/top/ai/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Reason for popularity
18
“Typical machine learning algorithms are highly flexible
So will uncover associations we could not find before
Hence better predictions and management decisions”
→ One of the master keys, with guaranteed success!
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine learning
(vs traditional statistics):
success guaranteed?
19
AI in medicine vs elsewhere
• AI is everywhere
o You get ads for products you’ve just been searching (e.g. a cruise)
o You get recommendations for movies based on movies that you watched
• If 1/3 of the ads/movies are of interest to me, performance is poor but it ‘worked’
• Consequences in medicine are different: 1/3 decent predictions is unacceptable
20
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Traditional Statistics vs Machine Learning
21Breiman. Stat Sci 2001;16:199-231.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
A wild oversimplification
22Used visualizations from: Topol, Nat Med 2019;25:44-56; Van Calster et al, Ultrasound Obstet Gynecol 2007;29:496-504; kdnuggets.com.
X1
X2
X3
X4
X5
X6
X7
X8
Y
Classical statistical modeling
(regression)
Flexible algorithms
(machine learning)
Artificial neural networks (incl deep learning),
Support vector machines, Decision trees,
Random forests, boosted tree models, …
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Traditional Statistics vs Machine Learning
23
Shmueli. Keynote talk at 2019 ISBIS conference, Kuala Lumpur; taken from slideshare.net
Bzdok. Nature Methods 2018;15:233-4.
??
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Traditional Statistics vs Machine Learning
24
Traditional regression modeling can be used for prediction, is used for
prediction, and is able to do prediction very well!
Steyerberg. Clinical prediction models (2nd ed). New York: Springer, 2019.
Riley et al. Prognosis Research in healthcare. Oxford: OUP, 2019.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine Learning: success guaranteed?
25Christodoulou et al. J Clin Epidemiol 2019;110:12-22.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Traditional Statistics vs Machine Learning
26Christodoulou et al. J Clin Epidemiol 2019;110:12-22.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Typical applications of
ML in medicine
27
Deep learning for medical images
28Topol. Nat Med 2019;25:44-56.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Deep learning for medical images
29
Topol. Nat Med 2019;25:44-56.
Titano et al. Nat Med 2018;24:1337-41; Nam et al. Radiology 2019;290:218-28; Ehteshami Bejnordi et al. JAMA 2017;318:2199-210;
Esteva et al. Nature 2017;542:115-8; De Fauw et al. Nat Med 2018;24:1342-50; Raman et al. Eye 2019;33:97-109.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Deep learning for medical images
30Liu et al. Lancet Dig Health 2019;1:e271-97.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine Learning for EHR data
31
Rajkomar et al. Npj Digit Med 2018;1:18.
Rose. JAMA Netw Open 2018;1:e181404.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine Learning for EHR data
32Rajkomar et al. Npj Digit Med 2018;1:18.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Machine Learning for EHR data
33Goldstein et al. J Am Med Inform Assoc 2017;24:198-208.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Clustering
34Ahlqvist et al. Lancet Diabetes Endocrinol 2018;6:361-9.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Concerns for development,
validation, and
implementation
35
Ten concerns for predictive analytics
36
 1. Poor study design makes choice of algorithm irrelevant
 2. Flexible algorithms are data hungry, but rich datasets have poor quality
 3. There is large heterogeneity between settings and studies
 4. The modeling strategy and reporting is often problematic
 5. The signal-to-noise ratio in medicine is often low
 6. Using a model makes it invalid (a ‘prediction paradox’)
 7. Flexible algorithms are hard to interpret
 8. Algorithms should be available and free from conflict of interest
 9. Regulatory approval does not guarantee that it works well
10. Algorithms can be unfair for subgroups
(we do not even touch upon actual clinical utility)
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
1. Study design trumps algorithm choice
37
Do you have a clear research question?
Do you have data that help you answer the question?
What is the quality of the data?
Dilbert.com
Riley. Nature 2019;275:27-9.
One simple example: EHR data were not collected for research purposes
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example
38
Uses ANN, Random Forests, Naïve Bayes, and Logistic Regression.
(Logistic regression performed best, AUC 0.92)
Hernandez-Suarez et al. JACC Cardiovasc Interv 2019;12:1328-38.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example (contd)
39
The model also uses postoperative information.
David J Cohen, MD: “The model can’t be run properly until you know about both the presence and the absence of
those complications, but you don’t know about the absence of a complication until the patient has left the hospital.”
https://www.tctmd.com/news/machine-learning-helps-predict-hospital-mortality-post-tavr-skepticism-abounds
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example 2
40
Predictions based on whether ruler was on image. This
implied that the clinician was concerned about the lesion.
Paper mentioned that people could do it themselves
using smartphone: that is completely different
Esteva et al. Nature 2017;542:115-8.
https://towardsdatascience.com/is-the-medias-reluctance-to-admit-ai-s-weaknesses-putting-us-at-risk-c355728e9028
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example 3
41Winkler et al. JAMA Dermatol 2019; in press.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example 4
42Khazendar et al. Facts Views Vis ObGyn 2015;7:7-15.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
2. Flexible algorithms are data hungry
43http://www.portlandsports.com/hot-dog-eating-champ-kobayashi-hits-psu/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Flexible algorithms are data hungry
44Van der Ploeg et al. BMC Med Res Methodol 2014;14:137.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Flexible algorithms are data hungry
45
https://simplystatistics.org/2017/05/31/deeplearning-vs-leekasso/
Marcus. arXiv 2018; arXiv:1801.00631
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
3. Large heterogeneity
46
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Large heterogeneity in healthcare
47
Riley et al. BMJ 2016;353:i3140.
Davis et al. JAMIA 2017;24:1052-61.
Steyerberg et al. Stat Med 2019;38:4290-309.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Heterogeneity of logistics and processes
48Agniel. BMJ 2018;360:k1479.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Heterogeneity between studies
49
Badgeley et al. arXiv 2018; arXiv:1811.03695v1.
Finlayson et al. Science 2019;363:1287-9.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Many possible hidden variables
50Riley. Nature 2019;572:27-9.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example
51
Validation in the same hospital Validation in another hospital
Norgeot et al. JAMA Netw Open 2019;2:e190606.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Reliable risk estimates: the Achilles heel?
52
Shah et al. JAMA 2018;320:27-8.
Van Calster et al. BMC Med, in press.
Rose. JAMA Netw Open 2018;1:e181404.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
4. Poor modeling and unclear reporting
53
Christodoulou et al. J Clin Epidemiol 2019;110:12-22.
Collins and Moons. Lancet 2019;393:1577-9.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Poor modeling and unclear reporting
54
What was done about missing data? 45% fully unclear, 100% poor or unclear
How were continuous predictors modeled? 20% unclear, 25% categorized
How were hyperparameters tuned? 66% unclear, 19% tuned with information
How was performance validated? 68% unclear or biased approach
Was calibration of risk estimates studied? 79% not at all, HL test common
Prognosis: time horizon often ignored completely
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Christodoulou et al. J Clin Epidemiol 2019;110:12-22.
Example
55
“model based on all of the 473 available variables”
Alaa et al. PLoS One 2019;14:e0213653.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
No thank you
56Hutson. Science 2019;365:416-7.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
5. Signal-to-noise ratio (SNR) is often low
57
High SNR: predictors-outcome relationship is clear and sharp, little affected by unwanted
noise
There is support that flexible algorithms work best with high SNR, not with low SNR.
How can methods that look everywhere be better when you do not know where to look or what you look for?
Hand. Stat Sci 2006;21:1-14.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Algorithm flexibility and SNR
58Makridakis et al. PLoS One 2018;13:e0194889.
Ennis et al. Stat Med 1998;17:2501-8.
Goldstein et al. Stat Med 2017;36:2750-63.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Yet…
59Rajkomar et al. NEJM 2019;380:1347-58.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
6. Using a model makes it invalid
60
Peek et al. https://www.bmj.com/content/357/bmj.j2099/rr-0
Challen et al. BMJ Qual Saf 2019;28:231-7.
Coston et al. arXiv 2019; arXiv:1909.00066.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Peek et al (2017): “predictions influencing behaviours that in turn invalidates predictions”
7. Low interpretability
61
??
Deep learning image adapted from: Topol. Nat Med 2019;25:44-56.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
8. Model (un)availability and CoI
62
Panch et al. npj Digit Med 2019;2:77.
Van Calster et al. JAMIA 2019; in press.
Boulesteix et al. Biom J 2019;61:1314-28.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Proprietary algorithms and CoI
63
Van Calster et al. JAMA Intern Med 2019;179:731. Janssens. Genes 2019;10:448.
Van Calster et al. JAMIA 2019; in press.
https://www.theguardian.com/politics/2019/oct/11/dominic-cummings-accused-of-conflict-of-interest-over-nhs-fund?CMP=Share_iOSApp_Other.
“Ethically unacceptable to have a business model
that focuses on selling an algorithm”
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
9. Regulatory approval of AI (FDA, CE,…)
64
® Evolving domain, trying to keep up with reality.
® Approval not easy from academia (non-profit): should be looked at.
® Approval does not mean that it works well or is safe. This is changing (e.g. FDA).
® What with continuously updated algorithms (across time and place)?
® Balance between transparency, commercial interests, IPR, and societal benefit.
Parikh et al. Science 2019;363:810-2.
Schulz et al. Clin Chem 2019;65:10.
https://www.theguardian.com/politics/2019/oct/11/dominic-cummings-accused-of-conflict-of-interest-over-nhs-fund?CMP=Share_iOSApp_Other.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Regulation of AI (FDA, CE, NMPA)
65https://www.fda.gov/media/122535/download
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Regulation of AI (FDA, CE, NMPA)
66
Topol. Nat Med 2019;25:44-56.
https://amp.theguardian.com/society/2019/oct/15/councils-using-algorithms-make-welfare-decisions-benefits?__twitter_impression=true
https://www.digitalhealth.net/2019/10/healthcare-apps-safety-standards/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Example: Babylon’s “GP at hand” app
67
https://www.thetimes.co.uk/article/gp-at-hand-app-babylon-bleeds-cash-dgtnldmqk;
https://www.thetimes.co.uk/article/its-hysteria-not-a-heart-attack-gp-app-tells-women-gm2vxbrqk; http://unitelive.org/matt-hancock-gp-at-hand/;
https://www.newstatesman.com/politics/health/2019/07/computer-will-see-you-now?amp&__twitter_impression=true;
Burki. Lancet 2019;394:457-60.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
10. Algorithms are easily unfair
68
Rajkomar et al. Ann Intern Med 2018;169:866-72.
Obermeyer et al. Science 2019;366:447-53.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Beyond the hype
69
The Gartner hype cycle
70https://www.gartner.com/en/research/methodologies/gartner-hype-cycle
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Let’s go to the ‘plateau of productivity’
71
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Algorithms are only algorithms, and dumb
72
Chen and Asch. NEJM 2017;376:2507-9.
Beam and Kohane. JAMA 2018;319:1317-8.
Maddox et al. JAMA 2019;321:31-2.
https://www.fatml.org/; http://www.equator-network.org/reporting-guidelines/tripod-statement/
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Methodology is key (as always)
73Wiens et al. Nat Med 2019;25:1337-40.
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
Beyond the hype towards added value
74
METHODOLOGY REPORTING
GIGO DATA QUALITY DATA SIZE
PRIOR KNOWLEDGE
HETEROGENEITY INTERPRETABILITY
TRANSPARENCY AVAILABILITY
FAIRNESS
If methodology is poor, ML will not save you.
If methodology is good, ML may or may not improve predictions
My experience:
- You get funding for cool ideas, not for good methodology
- Universities do not really check whether their researchers do high quality research
1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype

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Machine learning in medicine: calm down

  • 1. Machine learning in medicine: calm down Ben Van Calster Department of Development and Regeneration, KU Leuven (B) Department of Biomedical Data Sciences, LUMC (NL) Research Ethics Committee, University Hospitals Leuven (B) Epi-Centre, KU Leuven (B) Innsbruck, November 8th, 2019
  • 3. No holy grail 3Indiana Jones and the Last Crusade, 1989.
  • 4. Contents • What are we talking about? AI, ML, and its applications • ML instead of traditional statistics: success guaranteed? • Typical applications of ML in medicine • Ten concerns for model development, validation and implementation • Beyond the hype 4
  • 5. What are we talking about? 5
  • 6. Artificial intelligence (AI) 6 Attributed to John McCarthy (Stanford) in 1955: “Every aspect of learning or intelligence can in principle be so precisely described that a machine can be made to simulate it.” Russell and Norvig (2010): - Think like a human - Act like a human - Think rationally - Act rationally 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype McCarthy et al. A proposal for the Dartmouth summer research project on artificial intelligence, 1955. URL http://www-formal.stanford.edu/jmc/history/dartmouth/dartmouth.html. https://www.independent.co.uk/news/obituaries/john-mccarthy-computer-scientist-known-as-the-father-of-ai-6255307.html Russell & Norvig. Artificial Intelligence: A Modern Approach (3rd ed). New Jersey: Prentice Hall, 2010.
  • 7. Machine learning 7 Branch of AI, term attributed to Arthur Lee Samuel (IBM) in 1959. Wikipedia (sorry): Algorithms are developed to perform a specific task without using explicit instructions, relying on patterns and inference instead. Shillan et al (2019): form of AI in which a model learns from examples rather then pre- programmed rules. History-computer.com Shillan et al. Crit Care 2019;23:284. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 8. Gaming 8https://www.trendhunter.com/trends/hello-neighbor 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 9. Gaming 9https://towardsdatascience.com/using-deep-learning-to-improve-fifa-18-graphics-529ec44ea37e 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 10. Speech recognition (e.g. Siri, Bixby) 10https://focalcode.com/blog/10-real-world-examples-of-machine-learning-and-ai-2018-2/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 11. Credit card fraud 11https://www.slideshare.net/dalpozz/adaptive-machine-learning-for-credit-card-fraud-detection 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 12. Shoplifting 12https://newatlas.com/vaak-vaakeye-ai-theft-detection/59263/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 13. Non-exhaustive list 13 Gaming Natural Language Processing (Siri etc) Fraud detection Shoplifting Object recognition (e.g. for driverless cars) Facial recognition Traffic analysis and predictions (e.g. Waze app) Electrical load forecasting (Social) media and advertising (people you may know, movie suggestions, …) Spam filtering Search engines (e.g. Google PageRank) Handwriting recognition Also less positive applications, such as ‘deepfake’ adult movies And… medicine and healthcare 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 14. Machine learning in medicine: overview 14Intellspot.com Input and output data Input data PREDICTION PATTERNS 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 15. Popularity skyrocketing 15Search on https://www.ncbi.nlm.nih.gov/pubmed/ on (performed Oct 18, 2019) 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 16. Funding 16 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 17. Start-ups 17https://medicalstartups.org/top/ai/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 18. Reason for popularity 18 “Typical machine learning algorithms are highly flexible So will uncover associations we could not find before Hence better predictions and management decisions” → One of the master keys, with guaranteed success! 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 19. Machine learning (vs traditional statistics): success guaranteed? 19
  • 20. AI in medicine vs elsewhere • AI is everywhere o You get ads for products you’ve just been searching (e.g. a cruise) o You get recommendations for movies based on movies that you watched • If 1/3 of the ads/movies are of interest to me, performance is poor but it ‘worked’ • Consequences in medicine are different: 1/3 decent predictions is unacceptable 20 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 21. Traditional Statistics vs Machine Learning 21Breiman. Stat Sci 2001;16:199-231. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 22. A wild oversimplification 22Used visualizations from: Topol, Nat Med 2019;25:44-56; Van Calster et al, Ultrasound Obstet Gynecol 2007;29:496-504; kdnuggets.com. X1 X2 X3 X4 X5 X6 X7 X8 Y Classical statistical modeling (regression) Flexible algorithms (machine learning) Artificial neural networks (incl deep learning), Support vector machines, Decision trees, Random forests, boosted tree models, … 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 23. Traditional Statistics vs Machine Learning 23 Shmueli. Keynote talk at 2019 ISBIS conference, Kuala Lumpur; taken from slideshare.net Bzdok. Nature Methods 2018;15:233-4. ?? 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 24. Traditional Statistics vs Machine Learning 24 Traditional regression modeling can be used for prediction, is used for prediction, and is able to do prediction very well! Steyerberg. Clinical prediction models (2nd ed). New York: Springer, 2019. Riley et al. Prognosis Research in healthcare. Oxford: OUP, 2019. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 25. Machine Learning: success guaranteed? 25Christodoulou et al. J Clin Epidemiol 2019;110:12-22. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 26. Traditional Statistics vs Machine Learning 26Christodoulou et al. J Clin Epidemiol 2019;110:12-22. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 27. Typical applications of ML in medicine 27
  • 28. Deep learning for medical images 28Topol. Nat Med 2019;25:44-56. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 29. Deep learning for medical images 29 Topol. Nat Med 2019;25:44-56. Titano et al. Nat Med 2018;24:1337-41; Nam et al. Radiology 2019;290:218-28; Ehteshami Bejnordi et al. JAMA 2017;318:2199-210; Esteva et al. Nature 2017;542:115-8; De Fauw et al. Nat Med 2018;24:1342-50; Raman et al. Eye 2019;33:97-109. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 30. Deep learning for medical images 30Liu et al. Lancet Dig Health 2019;1:e271-97. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 31. Machine Learning for EHR data 31 Rajkomar et al. Npj Digit Med 2018;1:18. Rose. JAMA Netw Open 2018;1:e181404. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 32. Machine Learning for EHR data 32Rajkomar et al. Npj Digit Med 2018;1:18. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 33. Machine Learning for EHR data 33Goldstein et al. J Am Med Inform Assoc 2017;24:198-208. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 34. Clustering 34Ahlqvist et al. Lancet Diabetes Endocrinol 2018;6:361-9. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 35. Concerns for development, validation, and implementation 35
  • 36. Ten concerns for predictive analytics 36  1. Poor study design makes choice of algorithm irrelevant  2. Flexible algorithms are data hungry, but rich datasets have poor quality  3. There is large heterogeneity between settings and studies  4. The modeling strategy and reporting is often problematic  5. The signal-to-noise ratio in medicine is often low  6. Using a model makes it invalid (a ‘prediction paradox’)  7. Flexible algorithms are hard to interpret  8. Algorithms should be available and free from conflict of interest  9. Regulatory approval does not guarantee that it works well 10. Algorithms can be unfair for subgroups (we do not even touch upon actual clinical utility) 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 37. 1. Study design trumps algorithm choice 37 Do you have a clear research question? Do you have data that help you answer the question? What is the quality of the data? Dilbert.com Riley. Nature 2019;275:27-9. One simple example: EHR data were not collected for research purposes 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 38. Example 38 Uses ANN, Random Forests, Naïve Bayes, and Logistic Regression. (Logistic regression performed best, AUC 0.92) Hernandez-Suarez et al. JACC Cardiovasc Interv 2019;12:1328-38. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 39. Example (contd) 39 The model also uses postoperative information. David J Cohen, MD: “The model can’t be run properly until you know about both the presence and the absence of those complications, but you don’t know about the absence of a complication until the patient has left the hospital.” https://www.tctmd.com/news/machine-learning-helps-predict-hospital-mortality-post-tavr-skepticism-abounds 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 40. Example 2 40 Predictions based on whether ruler was on image. This implied that the clinician was concerned about the lesion. Paper mentioned that people could do it themselves using smartphone: that is completely different Esteva et al. Nature 2017;542:115-8. https://towardsdatascience.com/is-the-medias-reluctance-to-admit-ai-s-weaknesses-putting-us-at-risk-c355728e9028 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 41. Example 3 41Winkler et al. JAMA Dermatol 2019; in press. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 42. Example 4 42Khazendar et al. Facts Views Vis ObGyn 2015;7:7-15. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 43. 2. Flexible algorithms are data hungry 43http://www.portlandsports.com/hot-dog-eating-champ-kobayashi-hits-psu/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 44. Flexible algorithms are data hungry 44Van der Ploeg et al. BMC Med Res Methodol 2014;14:137. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 45. Flexible algorithms are data hungry 45 https://simplystatistics.org/2017/05/31/deeplearning-vs-leekasso/ Marcus. arXiv 2018; arXiv:1801.00631 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 46. 3. Large heterogeneity 46 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 47. Large heterogeneity in healthcare 47 Riley et al. BMJ 2016;353:i3140. Davis et al. JAMIA 2017;24:1052-61. Steyerberg et al. Stat Med 2019;38:4290-309. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 48. Heterogeneity of logistics and processes 48Agniel. BMJ 2018;360:k1479. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 49. Heterogeneity between studies 49 Badgeley et al. arXiv 2018; arXiv:1811.03695v1. Finlayson et al. Science 2019;363:1287-9. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 50. Many possible hidden variables 50Riley. Nature 2019;572:27-9. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 51. Example 51 Validation in the same hospital Validation in another hospital Norgeot et al. JAMA Netw Open 2019;2:e190606. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 52. Reliable risk estimates: the Achilles heel? 52 Shah et al. JAMA 2018;320:27-8. Van Calster et al. BMC Med, in press. Rose. JAMA Netw Open 2018;1:e181404. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 53. 4. Poor modeling and unclear reporting 53 Christodoulou et al. J Clin Epidemiol 2019;110:12-22. Collins and Moons. Lancet 2019;393:1577-9. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 54. Poor modeling and unclear reporting 54 What was done about missing data? 45% fully unclear, 100% poor or unclear How were continuous predictors modeled? 20% unclear, 25% categorized How were hyperparameters tuned? 66% unclear, 19% tuned with information How was performance validated? 68% unclear or biased approach Was calibration of risk estimates studied? 79% not at all, HL test common Prognosis: time horizon often ignored completely 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype Christodoulou et al. J Clin Epidemiol 2019;110:12-22.
  • 55. Example 55 “model based on all of the 473 available variables” Alaa et al. PLoS One 2019;14:e0213653. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 56. No thank you 56Hutson. Science 2019;365:416-7. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 57. 5. Signal-to-noise ratio (SNR) is often low 57 High SNR: predictors-outcome relationship is clear and sharp, little affected by unwanted noise There is support that flexible algorithms work best with high SNR, not with low SNR. How can methods that look everywhere be better when you do not know where to look or what you look for? Hand. Stat Sci 2006;21:1-14. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 58. Algorithm flexibility and SNR 58Makridakis et al. PLoS One 2018;13:e0194889. Ennis et al. Stat Med 1998;17:2501-8. Goldstein et al. Stat Med 2017;36:2750-63. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 59. Yet… 59Rajkomar et al. NEJM 2019;380:1347-58. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 60. 6. Using a model makes it invalid 60 Peek et al. https://www.bmj.com/content/357/bmj.j2099/rr-0 Challen et al. BMJ Qual Saf 2019;28:231-7. Coston et al. arXiv 2019; arXiv:1909.00066. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype Peek et al (2017): “predictions influencing behaviours that in turn invalidates predictions”
  • 61. 7. Low interpretability 61 ?? Deep learning image adapted from: Topol. Nat Med 2019;25:44-56. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 62. 8. Model (un)availability and CoI 62 Panch et al. npj Digit Med 2019;2:77. Van Calster et al. JAMIA 2019; in press. Boulesteix et al. Biom J 2019;61:1314-28. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 63. Proprietary algorithms and CoI 63 Van Calster et al. JAMA Intern Med 2019;179:731. Janssens. Genes 2019;10:448. Van Calster et al. JAMIA 2019; in press. https://www.theguardian.com/politics/2019/oct/11/dominic-cummings-accused-of-conflict-of-interest-over-nhs-fund?CMP=Share_iOSApp_Other. “Ethically unacceptable to have a business model that focuses on selling an algorithm” 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 64. 9. Regulatory approval of AI (FDA, CE,…) 64 ® Evolving domain, trying to keep up with reality. ® Approval not easy from academia (non-profit): should be looked at. ® Approval does not mean that it works well or is safe. This is changing (e.g. FDA). ® What with continuously updated algorithms (across time and place)? ® Balance between transparency, commercial interests, IPR, and societal benefit. Parikh et al. Science 2019;363:810-2. Schulz et al. Clin Chem 2019;65:10. https://www.theguardian.com/politics/2019/oct/11/dominic-cummings-accused-of-conflict-of-interest-over-nhs-fund?CMP=Share_iOSApp_Other. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 65. Regulation of AI (FDA, CE, NMPA) 65https://www.fda.gov/media/122535/download 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 66. Regulation of AI (FDA, CE, NMPA) 66 Topol. Nat Med 2019;25:44-56. https://amp.theguardian.com/society/2019/oct/15/councils-using-algorithms-make-welfare-decisions-benefits?__twitter_impression=true https://www.digitalhealth.net/2019/10/healthcare-apps-safety-standards/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 67. Example: Babylon’s “GP at hand” app 67 https://www.thetimes.co.uk/article/gp-at-hand-app-babylon-bleeds-cash-dgtnldmqk; https://www.thetimes.co.uk/article/its-hysteria-not-a-heart-attack-gp-app-tells-women-gm2vxbrqk; http://unitelive.org/matt-hancock-gp-at-hand/; https://www.newstatesman.com/politics/health/2019/07/computer-will-see-you-now?amp&__twitter_impression=true; Burki. Lancet 2019;394:457-60. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 68. 10. Algorithms are easily unfair 68 Rajkomar et al. Ann Intern Med 2018;169:866-72. Obermeyer et al. Science 2019;366:447-53. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 70. The Gartner hype cycle 70https://www.gartner.com/en/research/methodologies/gartner-hype-cycle 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 71. Let’s go to the ‘plateau of productivity’ 71 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 72. Algorithms are only algorithms, and dumb 72 Chen and Asch. NEJM 2017;376:2507-9. Beam and Kohane. JAMA 2018;319:1317-8. Maddox et al. JAMA 2019;321:31-2. https://www.fatml.org/; http://www.equator-network.org/reporting-guidelines/tripod-statement/ 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 73. Methodology is key (as always) 73Wiens et al. Nat Med 2019;25:1337-40. 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype
  • 74. Beyond the hype towards added value 74 METHODOLOGY REPORTING GIGO DATA QUALITY DATA SIZE PRIOR KNOWLEDGE HETEROGENEITY INTERPRETABILITY TRANSPARENCY AVAILABILITY FAIRNESS If methodology is poor, ML will not save you. If methodology is good, ML may or may not improve predictions My experience: - You get funding for cool ideas, not for good methodology - Universities do not really check whether their researchers do high quality research 1. What are we talking about 2. Success guaranteed? 3. Applications 4. Concerns 5. Beyond the hype