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BMS 631 - LECTURE 9 Flow Cytometry: Theory Hansen Hall, B050 Purdue University Office: 494 0757 Fax 494 0517 Email:  [email_address] WEB  http://www.cyto.purdue.edu Data Collection:  Linear, log, ratios…. 3 rd  Ed.Shapiro  163-171 J. Paul Robinson Professor of Immunopharmacology Professor of Biomedical Engineering Purdue University
Linear and Log circuits ,[object Object],[object Object],[object Object],[object Object]
Linear circuits ,[object Object],[object Object],[object Object],[object Object],[object Object]
Why use linear amps? ,[object Object],[object Object],[object Object],[object Object],10  100  1000  10000 1  100mv  10mv  1mv Factor reduction pulse output
How many bits? ,[object Object],[object Object],0 50 100 150 200  250 10V 1V 100mV Channels
Ideal log amp 0 50 100 150 200 250 10 V 1 V 100 mV 0 50 100 150 200 250 10 V 1 mV Channels Linear Log 1 V 100 mV 10 mV Log amp
Where is the inaccuracy? ,[object Object],[object Object],[object Object],[object Object],[object Object]
Log amps & dynamic range ,[object Object]
Log/lin display
Ratio circuits ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
4 colors - simultaneous collection Emission wavelength (nm) 530    580 630  680  730  780 FITC PE PE- TR PE-CY5
Digital Signal Processing (DSP) ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Fluorescence compensation ,[object Object],[object Object],[object Object]
Precision - C.V. ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Conclusion Shapiro’s 7th Law of Flow Cytometry: No Data Analysis Technique Can Make  Good Data Out of Bad Data!!!
Coefficient of Variation ,[object Object],[object Object],[object Object],[object Object],MEAN CV=3.0 CV=3.0 %CV Definition = St.Dev x 100 MEAN
Quantitative Units - ABC A ntiboidy  B inding  C apacity ,[object Object],[object Object]
0 50 100 150 200 250 1 10 100 1,000 10,000 100,000 1,000,000 Histogram Channel Antibody Binding Capacity Mean 98% Detection Threshold (noise) Slide from Dr. Abe Schwartz
What is the Importance of      the Detection Threshold? Indicates the lowest level that a specific antibody  may be detected by the instrument.  Indicates if the noise level will interfere with the assay.
Coefficient of Response ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Slide from Dr. Abe Schwartz
Zero Channel Value? ,[object Object],[object Object],[object Object],Slide from Dr. Abe Schwartz
Comparison of Windows of Analysis  in Sample Space Coef. of Res = 85.3 (3 decade log amp) Coef. of Res = 64.0 (4 decade Log amp) ABC Sample Space Zero  Channel Value 255 0 Slide from Dr. Abe Schwartz
Determination of Unknowns Antibody Binding Capacity Detection Level Non-specific Binding  Specific Binding Slide from Dr. Abe Schwartz Cells Standards 200 400 600 800 0 1 10 100 1,000 10,000 100,000
Important Components ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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Flow cytometry

  • 1. BMS 631 - LECTURE 9 Flow Cytometry: Theory Hansen Hall, B050 Purdue University Office: 494 0757 Fax 494 0517 Email: [email_address] WEB http://www.cyto.purdue.edu Data Collection: Linear, log, ratios…. 3 rd Ed.Shapiro 163-171 J. Paul Robinson Professor of Immunopharmacology Professor of Biomedical Engineering Purdue University
  • 2.
  • 3.
  • 4.
  • 5.
  • 6. Ideal log amp 0 50 100 150 200 250 10 V 1 V 100 mV 0 50 100 150 200 250 10 V 1 mV Channels Linear Log 1 V 100 mV 10 mV Log amp
  • 7.
  • 8.
  • 10.
  • 11. 4 colors - simultaneous collection Emission wavelength (nm) 530 580 630 680 730 780 FITC PE PE- TR PE-CY5
  • 12.
  • 13.
  • 14.
  • 15. Conclusion Shapiro’s 7th Law of Flow Cytometry: No Data Analysis Technique Can Make Good Data Out of Bad Data!!!
  • 16.
  • 17.
  • 18. 0 50 100 150 200 250 1 10 100 1,000 10,000 100,000 1,000,000 Histogram Channel Antibody Binding Capacity Mean 98% Detection Threshold (noise) Slide from Dr. Abe Schwartz
  • 19. What is the Importance of     the Detection Threshold? Indicates the lowest level that a specific antibody may be detected by the instrument. Indicates if the noise level will interfere with the assay.
  • 20.
  • 21.
  • 22. Comparison of Windows of Analysis in Sample Space Coef. of Res = 85.3 (3 decade log amp) Coef. of Res = 64.0 (4 decade Log amp) ABC Sample Space Zero Channel Value 255 0 Slide from Dr. Abe Schwartz
  • 23. Determination of Unknowns Antibody Binding Capacity Detection Level Non-specific Binding Specific Binding Slide from Dr. Abe Schwartz Cells Standards 200 400 600 800 0 1 10 100 1,000 10,000 100,000
  • 24.