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Purple Mushrooms, Pygmy
Rabbits, and Big-Eared Bats
Extracting and Analyzing Biological Observations from Disparate Datastores
20
22
FME
User
Conference
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22
FME
User
Conference
Daniel Karnes, GISP, PhD
• Surveyor
• Cartographer (pen and ink)
• Cartographer (digital)
• GIS Analyst
• Professor (GIS)
• Geospatial Intelligence Analyst
• Developer
Geographer
20
22
FME
User
Conference
In any large project, there
will be the easy problem
and the real problem.
The easy problem is
finding the general
approach.
The real problem is in the
details.
Details can be dealt with:
•Approach
•Tools
20
22
FME
User
Conference
Defining the Task
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22
FME
User
Conference
The Task Defined
Develop a way to count biological observations and sites
of sensitive and special status (SSS) species on US Forest
Service (FS) and Bureau of Land Management (BLM) land
in FS Region 6 and BLM State of Oregon.
Unpacking the Task
● FS (Department of Agriculture) and BLM
(Department of Interior) have separate computer
networks and biological sites & obs databases
● SSS list is jointly maintained by Regional Forester
(FS) and Oregon State Director (BLM)
● FS Region 6 and BLM Oregon State are almost the
same geography
20
22
FME
User
Conference
Two Separate Systems
• BLM: GeoBOB (Geographic
Biological Observations)
• Regional extent
• Point and polygon geometry
• USFS: NRM (Natural Resource
Manager)
• National extent (Region 6 extract
shared with Oregon BLM)
• Polygon geometry (mostly)
20
22
FME
User
Conference
The Species List(s)
• Sensitive and Special Status Species
• 950+ records
• Birds, bryophytes, fungi, reptiles, amphibians,
freshwater mussels, slugs, snails, insects,
lichens, mammals, vascular plants
• Priority SSS
• 90 records – subset of SSS list
• Occasional single-species queries
20
22
FME
User
Conference
The Geographic Extent
• BLM & FS: 39% of OR & WA
• Other Fed: 8%
20
22
FME
User
Conference
The Easy Problem (This Will Vary)
● Three separate databases
● Schemas
● Business rules
● Data collection protocols
The Actual Problem (This Is Constant)
● Documentation consistency and completeness
● Requirement mutation
20
22
FME
User
Conference
Solving Both Problems
• The Easy One
• Three conceptual phases
• Standardize
• Analyze
• Visualize
• The Other One
• Iterative design – build
• Exploratory workspaces
• Full-featured GIS
• Consult SMEs
20
22
FME
User
Conference
Extract and Standardize
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22
FME
User
Conference
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22
FME
User
Conference
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FME
User
Conference
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22
FME
User
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FME
User
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Analyze
20
22
FME
User
Conference
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22
FME
User
Conference
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22
FME
User
Conference
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22
FME
User
Conference
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22
FME
User
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FME
User
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Visualize
20
22
FME
User
Conference
20
22
FME
User
Conference
20
22
FME
User
Conference
20
22
FME
User
Conference
20
22
FME
User
Conference
20
22
FME
User
Conference
In any large project, there
will be the easy problem
and the real problem.
The easy problem is
finding the general
approach.
The real problem is in the
details.
Details can be dealt with by:
•Iterative design-build
•Exploratory workspaces (FME)
•Using full-featured data
visualization tools
•Working with customers/SMEs
Thank You!
daniel.karnes@nv5.com

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