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© 2013 ExcelR Solutions. All Rights Reserved
Advanced Regression
AGENDA	
Mul)nomial	
Regression	
Zero	Inflated	
Poisson	
Regression	
Nega)ve	
Binomial
© 2013 ExcelR Solutions. All Rights Reserved
Multinomial Regression
•  Logis'c	regression	(Binomial	distribu'on)	is	used	when	output	has	‘2’	categories	
•  Mul'nomial	regression	(classifica'on	model)	is	used	when	output	has	>	‘2’	categories	
•  Extension	to	logis'c	regression	
	
•  No	natural	ordering	of	categories	
•  Response	variable	has	>	‘2’	categories	&	hence	we	apply	mul'logit	
•  Understand	the	impact	of	cost	&	'me	on	the	various	modes	of	transport	
Mode	of	
transport	
Car	 Carpool	 Bus	 Rail	 All	modes	
Count	 218	 32	 81	 122	 453	
Probability	 0.48	 0.07	 0.18	 0.27	 1
© 2013 ExcelR Solutions. All Rights Reserved
Multinomial Regression
•  Whether	we	have	‘Y’	(response)	or	‘X’	(predictor),	which	is	categorical	with	‘s’	categories	
ü  Lowest	in	numerical	/	lexicographical	value	is	chosen	as	baseline	/	reference	
ü  Missing	level	in	output	is	baseline	level	
ü  We	can	choose	the	baseline	level	of	our	choice	based	on	‘relevel’	func'on	in	R	
ü  Model	formulates	the	rela'onship	between	transformed	(logit)	Y	&	numerical	X	linearly	
ü  Modeling	quan'ta've	variables	linearly	might	not	always	be	correct
© 2013 ExcelR Solutions. All Rights Reserved
Multinomial Regression - Output
Itera'on	History:		
•  Itera've	procedure	is	used	to	compute	maximum	likelihood	es'mates	
•  #	itera'ons	&	convergence	status	is	provided	
•  -2logL	=	2	*	nega've	log	likelihood	
•  -2logL	has	χ2	distribu'on,	which	is	used	for	hypothesis	tes'ng	of	goodness	of	fit	
#	parameters	=	27
© 2013 ExcelR Solutions. All Rights Reserved
Multinomial Regression - Output
Log(P(choice	=	carpool	|	x)	/	P(choice	=	car	|	x)	=	β20	+	β21	*	cost.car	+	β22	*	cost.carpool	+	…………….		
	
This	equa'on	compares	the	log	of	probabili'es	of	carpool	to	car			
•  ‘car’	has	been	chosen	as	baseline	
•  x	=	vector	represen'ng	the	values	of	all	inputs	
•  The	regression	coefficient	0.636	indicates	that	for	a	‘1’	unit	increases	the	‘cost.car’,	the	log	odds	of	‘carpool’	to	‘car’	
increases	by	0.636	
•  Intercept	value	does	not	mean	anything	in	this	context	
	
•  If	we	have	a	categorical	X	also,	say	Gender	(female	=	0,	male	=	1),	then	regression	coefficient	(say	0.22)	indicates	
that	rela've	to	females,	males	increase	the	log	odds	of	‘carpool’	to	‘car’	by	0.22
© 2013 ExcelR Solutions. All Rights Reserved
Probability
•  Let	p	=	p(x	|	A)	be	the	probability	of	any	event	(say	airi'on)	under	condi'on	A	(say	
gender	=	female)		
	
•  Then		p(x	|	A)	÷	(1	-	p(x	|	A)	is	called	the	odds	associated	with	the	event	
Odds
•  If	there	are	two	condi'ons	A	(gender	=	female)	&	B	(gender	=	male)	then	the	ra'o	
						p(x	|	A)	÷	(1	-	p(x	|	A)	/	p(x	|	B)	÷	(1	-	p(x	|	B)		is	called	as	odds	ra'o	of	A	with	respect	to	B	
Odds Ratio
•  p(x	|	A)	÷	p(x	|	B)	is	called	as	rela've	risk	
Relative Risk
hips://en.wikipedia.org/wiki/Rela've_risk
© 2013 ExcelR Solutions. All Rights Reserved
•  Odds	ra'o	is	computed	from	the	coefficients	in	the	linear	model	equa'on	by	simply	
exponen'a'ng	
•  Exponen'ated	regression	coefficients	are	odds	ra'o	for	a	unit	change	in	a	predictor	
variable	
•  The	odds	ra'o	for	a	unit	increase	in	cost.car	is	1.88	for	choosing	carpool	vs	car	
Odds Ratio
© 2013 ExcelR Solutions. All Rights Reserved
Goodness of fit
Linear	 GLM	
Analysis	of	Variance	 Analysis	of	Deviance	
Residual	Deviance	 Residual	Sum	of	Squares	
OLS	 Maximum	Likelihood	
•  Residual	Deviance	is	-2	log	L	
•  Adding	more	parameters	to	the	model	will	reduce	Residual	Deviance	even	if	it	is	not	
going	to	be	useful	for	predic'on	
•  In	order	to	control	this,	penalty	of	“2	*	number	of	parameters”	is	added	to	to	
Residual	deviance	
•  This	penalized	value	of	-2	log	L	is	called	as	AIC	criterion	
•  AIC	=	-2	log	L	+	2	*	number	of	parameters	
Note:	“Mul'logit	Model	with	Interac(on”

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Data science 3

  • 1. © 2013 ExcelR Solutions. All Rights Reserved Advanced Regression AGENDA Mul)nomial Regression Zero Inflated Poisson Regression Nega)ve Binomial
  • 2. © 2013 ExcelR Solutions. All Rights Reserved Multinomial Regression •  Logis'c regression (Binomial distribu'on) is used when output has ‘2’ categories •  Mul'nomial regression (classifica'on model) is used when output has > ‘2’ categories •  Extension to logis'c regression •  No natural ordering of categories •  Response variable has > ‘2’ categories & hence we apply mul'logit •  Understand the impact of cost & 'me on the various modes of transport Mode of transport Car Carpool Bus Rail All modes Count 218 32 81 122 453 Probability 0.48 0.07 0.18 0.27 1
  • 3. © 2013 ExcelR Solutions. All Rights Reserved Multinomial Regression •  Whether we have ‘Y’ (response) or ‘X’ (predictor), which is categorical with ‘s’ categories ü  Lowest in numerical / lexicographical value is chosen as baseline / reference ü  Missing level in output is baseline level ü  We can choose the baseline level of our choice based on ‘relevel’ func'on in R ü  Model formulates the rela'onship between transformed (logit) Y & numerical X linearly ü  Modeling quan'ta've variables linearly might not always be correct
  • 4. © 2013 ExcelR Solutions. All Rights Reserved Multinomial Regression - Output Itera'on History: •  Itera've procedure is used to compute maximum likelihood es'mates •  # itera'ons & convergence status is provided •  -2logL = 2 * nega've log likelihood •  -2logL has χ2 distribu'on, which is used for hypothesis tes'ng of goodness of fit # parameters = 27
  • 5. © 2013 ExcelR Solutions. All Rights Reserved Multinomial Regression - Output Log(P(choice = carpool | x) / P(choice = car | x) = β20 + β21 * cost.car + β22 * cost.carpool + ……………. This equa'on compares the log of probabili'es of carpool to car •  ‘car’ has been chosen as baseline •  x = vector represen'ng the values of all inputs •  The regression coefficient 0.636 indicates that for a ‘1’ unit increases the ‘cost.car’, the log odds of ‘carpool’ to ‘car’ increases by 0.636 •  Intercept value does not mean anything in this context •  If we have a categorical X also, say Gender (female = 0, male = 1), then regression coefficient (say 0.22) indicates that rela've to females, males increase the log odds of ‘carpool’ to ‘car’ by 0.22
  • 6. © 2013 ExcelR Solutions. All Rights Reserved Probability •  Let p = p(x | A) be the probability of any event (say airi'on) under condi'on A (say gender = female) •  Then p(x | A) ÷ (1 - p(x | A) is called the odds associated with the event Odds •  If there are two condi'ons A (gender = female) & B (gender = male) then the ra'o p(x | A) ÷ (1 - p(x | A) / p(x | B) ÷ (1 - p(x | B) is called as odds ra'o of A with respect to B Odds Ratio •  p(x | A) ÷ p(x | B) is called as rela've risk Relative Risk hips://en.wikipedia.org/wiki/Rela've_risk
  • 7. © 2013 ExcelR Solutions. All Rights Reserved •  Odds ra'o is computed from the coefficients in the linear model equa'on by simply exponen'a'ng •  Exponen'ated regression coefficients are odds ra'o for a unit change in a predictor variable •  The odds ra'o for a unit increase in cost.car is 1.88 for choosing carpool vs car Odds Ratio
  • 8. © 2013 ExcelR Solutions. All Rights Reserved Goodness of fit Linear GLM Analysis of Variance Analysis of Deviance Residual Deviance Residual Sum of Squares OLS Maximum Likelihood •  Residual Deviance is -2 log L •  Adding more parameters to the model will reduce Residual Deviance even if it is not going to be useful for predic'on •  In order to control this, penalty of “2 * number of parameters” is added to to Residual deviance •  This penalized value of -2 log L is called as AIC criterion •  AIC = -2 log L + 2 * number of parameters Note: “Mul'logit Model with Interac(on”