This document analyzes the condition factor of 14 commercially important fish species collected from two estuaries in the lower Gangetic delta region of India - the Hooghly estuary and Matla estuary. The Hooghly estuary has lower salinity due to freshwater discharge, while the Matla estuary is hyper saline with no freshwater input. Condition factors were higher for all fish species collected from the Hooghly estuary, indicating that higher salinity adversely affects fish growth and condition. Long-term changes in salinity due to climate change and other factors could significantly impact the fisheries of this region.