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Maarten van Smeden, PhD
UHD lecture
November 21, 2022
Improving the understanding,
use and reporting of
clinical prediction models
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
APGAR score (1958)
Apgar et al. JAMA, 1958
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
“65% of U.S. physicians used MDCalc on a weekly basis”
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
PREDICTION MODELS USED IN PRACTICE
PREDICTION MODELS THAT WILL NEVER BE USED IN PRACTICE
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Example: living review
COVID-19 prediction
models
• 731 prediction models between
March 2020 and February 2021
• Many models poorly reported
• Only 4% low risk of bias
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
External validations
COVID-19 prediction
models
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Landscape of clinical prediction models
• 42 models for kidney failure in chronic kidney disease (Ramspek, 2019)
• 40 models for incident heart failure (Sahle, 2017)
• 37 models for treatment response in pulmonary TB (Peetluk, 2021)
• 35 models for in vitro fertilisation (Ratna, 2020)
• 34 models for stroke in type-2 diabetes (Chowdhury, 2019)
• 34 models for graft failure in kidney transplantation (Kabore, 2017)
• 31 models for length of stay in ICU (Verburg, 2016)
• 30 models for low back pain (Haskins, 2015)
• 27 models for pediatric early warning systems (Trubey, 2019)
• 27 models for malaria prognosis (Njim, 2019)
• 26 models for postoperative outcomes colorectal cancer (Souwer, 2020)
• 26 models for childhood asthma (Kothalawa, 2020)
• 25 models for lung cancer risk (Gray, 2016)
• 25 models for re-admission after admitted for heart failure (Mahajan, 2018)
• 23 models for recovery after ischemic stroke (Jampathong, 2018)
• 23 models for delirium in older adults (Lindroth, 2018)
• 21 models for atrial fibrillation detection in community (Himmelreich, 2020)
• 19 models for survival after resectable pancreatic cancer (Stijker, 2019)
• 18 models for recurrence hep. carc. after liver transplant (Al-Ameri, 2020)
• 18 models for future hypertension in children (Hamoen, 2018)
• 18 models for risk of falls after stroke (Walsh, 2016)
• 18 models for mortality in acute pancreatitis (Di, 2016)
• 17 models for bacterial meningitis (van Zeggeren, 2019)
• 17 models for cardiovascular disease in hypertensive population (Cai, 2020)
• 14 models for ICU delirium risk (Chen, 2020)
• 14 models for diabetic retinopathy progression (Haider, 2019)
• 1382 models for cardiovascular disease (Wessler, 2021)
• 731 models related to COVID-19 (Wynants, 2020)
• 408 models for COPD prognosis (Bellou, 2019)
• 363 models for cardiovascular disease general population (Damen, 2016)
• 327 models for toxicity prediction after radiotherapy (Takada, 2022)
• 263 prognosis models in obstetrics (Kleinrouweler, 2016)
• 258 models mortality after general trauma (Munter, 2017)
• 160 female-specific models for cardiovascular disease (Baart, 2019)
• 142 models for mortality prediction in preterm infants (van Beek, 2021)
• 119 models for critical care prognosis in LMIC (Haniffa, 2018)
• 101 models for primary gastric cancer prognosis (Feng, 2019)
• 99 models for neck pain (Wingbermühle, 2018)
• 81 models for sudden cardiac arrest (Carrick, 2020)
• 74 models for contrast-induced acute kidney injury (Allen, 2017)
• 73 models for 28/30 day hospital readmission (Zhou, 2016)
• 68 models for preeclampsia (De Kat, 2019)
• 68 models for living donor kidney/iver transplant counselling (Haller, 2022)
• 67 models for traumatic brain injury prognosis (Dijkland, 2019)
• 64 models for suicide / suicide attempt (Belsher, 2019)
• 61 models for dementia (Hou, 2019)
• 58 models for breast cancer prognosis (Phung, 2019)
• 52 models for pre‐eclampsia (Townsend, 2019)
• 52 models for colorectal cancer risk (Usher-Smith, 2016)
• 48 models for incident hypertension (Sun, 2017)
• 46 models for melanoma (Kaiser, 2020)
• 46 models for prognosis after carotid revascularisation (Volkers, 2017)
• 43 models for mortality in critically ill (Keuning, 2019)
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Landscape of clinical prediction models
• 42 models for kidney failure in chronic kidney disease (Ramspek, 2019)
• 40 models for incident heart failure (Sahle, 2017)
• 37 models for treatment response in pulmonary TB (Peetluk, 2021)
• 35 models for in vitro fertilisation (Ratna, 2020)
• 34 models for stroke in type-2 diabetes (Chowdhury, 2019)
• 34 models for graft failure in kidney transplantation (Kabore, 2017)
• 31 models for length of stay in ICU (Verburg, 2016)
• 30 models for low back pain (Haskins, 2015)
• 27 models for pediatric early warning systems (Trubey, 2019)
• 27 models for malaria prognosis (Njim, 2019)
• 26 models for postoperative outcomes colorectal cancer (Souwer, 2020)
• 26 models for childhood asthma (Kothalawa, 2020)
• 25 models for lung cancer risk (Gray, 2016)
• 25 models for re-admission after admitted for heart failure (Mahajan, 2018)
• 23 models for recovery after ischemic stroke (Jampathong, 2018)
• 23 models for delirium in older adults (Lindroth, 2018)
• 21 models for atrial fibrillation detection in community (Himmelreich, 2020)
• 19 models for survival after resectable pancreatic cancer (Stijker, 2019)
• 18 models for recurrence hep. carc. after liver transplant (Al-Ameri, 2020)
• 18 models for future hypertension in children (Hamoen, 2018)
• 18 models for risk of falls after stroke (Walsh, 2016)
• 18 models for mortality in acute pancreatitis (Di, 2016)
• 17 models for bacterial meningitis (van Zeggeren, 2019)
• 17 models for cardiovascular disease in hypertensive population (Cai, 2020)
• 14 models for ICU delirium risk (Chen, 2020)
• 14 models for diabetic retinopathy progression (Haider, 2019)
• 1382 models for cardiovascular disease (Wessler, 2021)
• 731 models related to COVID-19 (Wynants, 2020)
• 408 models for COPD prognosis (Bellou, 2019)
• 363 models for cardiovascular disease general population (Damen, 2016)
• 327 models for toxicity prediction after radiotherapy (Takada, 2022)
• 263 prognosis models in obstetrics (Kleinrouweler, 2016)
• 258 models mortality after general trauma (Munter, 2017)
• 160 female-specific models for cardiovascular disease (Baart, 2019)
• 142 models for mortality prediction in preterm infants (van Beek, 2021)
• 119 models for critical care prognosis in LMIC (Haniffa, 2018)
• 101 models for primary gastric cancer prognosis (Feng, 2019)
• 99 models for neck pain (Wingbermühle, 2018)
• 81 models for sudden cardiac arrest (Carrick, 2020)
• 74 models for contrast-induced acute kidney injury (Allen, 2017)
• 73 models for 28/30 day hospital readmission (Zhou, 2016)
• 68 models for preeclampsia (De Kat, 2019)
• 68 models for living donor kidney/iver transplant counselling (Haller, 2022)
• 67 models for traumatic brain injury prognosis (Dijkland, 2019)
• 64 models for suicide / suicide attempt (Belsher, 2019)
• 61 models for dementia (Hou, 2019)
• 58 models for breast cancer prognosis (Phung, 2019)
• 52 models for pre‐eclampsia (Townsend, 2019)
• 52 models for colorectal cancer risk (Usher-Smith, 2016)
• 48 models for incident hypertension (Sun, 2017)
• 46 models for melanoma (Kaiser, 2020)
• 46 models for prognosis after carotid revascularisation (Volkers, 2017)
• 43 models for mortality in critically ill (Keuning, 2019)
Over 260 systematic reviews of clinical prediction models
It is difficult to make
predictions, especially
about the future.
quote often attributed to Niels Bohr, but true source remains controversial
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Methods research and guidance
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Methods research and guidance
On a range of topics, including:
• Sample size for development
• Sample size for validation
• Dealing with measurement error
• Dealing with missing data
• Dealing with competing risks
• Multinomial/ordinal outcomes
• Methods for validation
• Reporting standards
• Performance metrics
• Predictor selection
• Setting risk thresholds
• Multicolinearity
• Hyperparameter tuning
• Class imbalance
• Model updating
• Guidance for systematic reviews
• Risk of bias
• Machine learning and AI
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Methods research and guidance
On a range of topics, including:
• Sample size for development
• Sample size for validation
• Dealing with measurement error
• Dealing with missing data
• Dealing with competing risks
• Multinomial/ordinal outcomes
• Methods for validation
• Reporting standards
• Performance metrics
• Predictor selection
• Setting risk thresholds
• Multicolinearity
• Hyperparameter tuning
• Handle class imbalance
• Model updating
• Guidance for systematic reviews
• Risk of bias
• Machine learning and AI
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Faes et al. doi: 10.3389/fdgth.2022.833912
% studies indexed in Medline with the Medical Subject Heading
(MeSH) term “Artificial Intelligence”
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Approval of AI devices by FDA rapidly growing
Source: https://tinyurl.com/khn4dvyb (accessed 20/11/2022)
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Adversarial example
https://bit.ly/2N4mQFo; https://bit.ly/2W7X9rF
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
https://tinyurl.com/3knkuzs3
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Skin cancer and rulers
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
AI/ML MODELS USED IN PRACTICE
AI/ML MODELS THAT WILL NEVER BE USED IN PRACTICE
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Utopia
Courtesy Anna Lohmann
“SOMETHING USEFUL”
Multivariable
model
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Prediction models are…
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Prediction models are…
• Expensive
• Not one-size-fits-all
• Many alternatives usually available
• Need crash testing (“impact”)
• Require regular MOT (“validation”)
• Require regular maintenance (”updating”)
• Require people to be trained how to operate them
• Can be dangerous when wrongly used
• Regulations apply
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Van Royen et al. ERJ, 2022
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Team science -- UMCU
UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
Email: M.vanSmeden@umcutrecht.nl
Twitter: @MaartenvSmeden
Slides available at:
https://www.slideshare.net/MaartenvanSmeden

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Associate professor lecture

  • 1. Maarten van Smeden, PhD UHD lecture November 21, 2022 Improving the understanding, use and reporting of clinical prediction models
  • 2. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden APGAR score (1958) Apgar et al. JAMA, 1958
  • 3. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 4. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 5. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 6. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 7. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 8. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden “65% of U.S. physicians used MDCalc on a weekly basis”
  • 9. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden PREDICTION MODELS USED IN PRACTICE PREDICTION MODELS THAT WILL NEVER BE USED IN PRACTICE
  • 10. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Example: living review COVID-19 prediction models • 731 prediction models between March 2020 and February 2021 • Many models poorly reported • Only 4% low risk of bias
  • 11. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden External validations COVID-19 prediction models
  • 12. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Landscape of clinical prediction models • 42 models for kidney failure in chronic kidney disease (Ramspek, 2019) • 40 models for incident heart failure (Sahle, 2017) • 37 models for treatment response in pulmonary TB (Peetluk, 2021) • 35 models for in vitro fertilisation (Ratna, 2020) • 34 models for stroke in type-2 diabetes (Chowdhury, 2019) • 34 models for graft failure in kidney transplantation (Kabore, 2017) • 31 models for length of stay in ICU (Verburg, 2016) • 30 models for low back pain (Haskins, 2015) • 27 models for pediatric early warning systems (Trubey, 2019) • 27 models for malaria prognosis (Njim, 2019) • 26 models for postoperative outcomes colorectal cancer (Souwer, 2020) • 26 models for childhood asthma (Kothalawa, 2020) • 25 models for lung cancer risk (Gray, 2016) • 25 models for re-admission after admitted for heart failure (Mahajan, 2018) • 23 models for recovery after ischemic stroke (Jampathong, 2018) • 23 models for delirium in older adults (Lindroth, 2018) • 21 models for atrial fibrillation detection in community (Himmelreich, 2020) • 19 models for survival after resectable pancreatic cancer (Stijker, 2019) • 18 models for recurrence hep. carc. after liver transplant (Al-Ameri, 2020) • 18 models for future hypertension in children (Hamoen, 2018) • 18 models for risk of falls after stroke (Walsh, 2016) • 18 models for mortality in acute pancreatitis (Di, 2016) • 17 models for bacterial meningitis (van Zeggeren, 2019) • 17 models for cardiovascular disease in hypertensive population (Cai, 2020) • 14 models for ICU delirium risk (Chen, 2020) • 14 models for diabetic retinopathy progression (Haider, 2019) • 1382 models for cardiovascular disease (Wessler, 2021) • 731 models related to COVID-19 (Wynants, 2020) • 408 models for COPD prognosis (Bellou, 2019) • 363 models for cardiovascular disease general population (Damen, 2016) • 327 models for toxicity prediction after radiotherapy (Takada, 2022) • 263 prognosis models in obstetrics (Kleinrouweler, 2016) • 258 models mortality after general trauma (Munter, 2017) • 160 female-specific models for cardiovascular disease (Baart, 2019) • 142 models for mortality prediction in preterm infants (van Beek, 2021) • 119 models for critical care prognosis in LMIC (Haniffa, 2018) • 101 models for primary gastric cancer prognosis (Feng, 2019) • 99 models for neck pain (Wingbermühle, 2018) • 81 models for sudden cardiac arrest (Carrick, 2020) • 74 models for contrast-induced acute kidney injury (Allen, 2017) • 73 models for 28/30 day hospital readmission (Zhou, 2016) • 68 models for preeclampsia (De Kat, 2019) • 68 models for living donor kidney/iver transplant counselling (Haller, 2022) • 67 models for traumatic brain injury prognosis (Dijkland, 2019) • 64 models for suicide / suicide attempt (Belsher, 2019) • 61 models for dementia (Hou, 2019) • 58 models for breast cancer prognosis (Phung, 2019) • 52 models for pre‐eclampsia (Townsend, 2019) • 52 models for colorectal cancer risk (Usher-Smith, 2016) • 48 models for incident hypertension (Sun, 2017) • 46 models for melanoma (Kaiser, 2020) • 46 models for prognosis after carotid revascularisation (Volkers, 2017) • 43 models for mortality in critically ill (Keuning, 2019)
  • 13. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Landscape of clinical prediction models • 42 models for kidney failure in chronic kidney disease (Ramspek, 2019) • 40 models for incident heart failure (Sahle, 2017) • 37 models for treatment response in pulmonary TB (Peetluk, 2021) • 35 models for in vitro fertilisation (Ratna, 2020) • 34 models for stroke in type-2 diabetes (Chowdhury, 2019) • 34 models for graft failure in kidney transplantation (Kabore, 2017) • 31 models for length of stay in ICU (Verburg, 2016) • 30 models for low back pain (Haskins, 2015) • 27 models for pediatric early warning systems (Trubey, 2019) • 27 models for malaria prognosis (Njim, 2019) • 26 models for postoperative outcomes colorectal cancer (Souwer, 2020) • 26 models for childhood asthma (Kothalawa, 2020) • 25 models for lung cancer risk (Gray, 2016) • 25 models for re-admission after admitted for heart failure (Mahajan, 2018) • 23 models for recovery after ischemic stroke (Jampathong, 2018) • 23 models for delirium in older adults (Lindroth, 2018) • 21 models for atrial fibrillation detection in community (Himmelreich, 2020) • 19 models for survival after resectable pancreatic cancer (Stijker, 2019) • 18 models for recurrence hep. carc. after liver transplant (Al-Ameri, 2020) • 18 models for future hypertension in children (Hamoen, 2018) • 18 models for risk of falls after stroke (Walsh, 2016) • 18 models for mortality in acute pancreatitis (Di, 2016) • 17 models for bacterial meningitis (van Zeggeren, 2019) • 17 models for cardiovascular disease in hypertensive population (Cai, 2020) • 14 models for ICU delirium risk (Chen, 2020) • 14 models for diabetic retinopathy progression (Haider, 2019) • 1382 models for cardiovascular disease (Wessler, 2021) • 731 models related to COVID-19 (Wynants, 2020) • 408 models for COPD prognosis (Bellou, 2019) • 363 models for cardiovascular disease general population (Damen, 2016) • 327 models for toxicity prediction after radiotherapy (Takada, 2022) • 263 prognosis models in obstetrics (Kleinrouweler, 2016) • 258 models mortality after general trauma (Munter, 2017) • 160 female-specific models for cardiovascular disease (Baart, 2019) • 142 models for mortality prediction in preterm infants (van Beek, 2021) • 119 models for critical care prognosis in LMIC (Haniffa, 2018) • 101 models for primary gastric cancer prognosis (Feng, 2019) • 99 models for neck pain (Wingbermühle, 2018) • 81 models for sudden cardiac arrest (Carrick, 2020) • 74 models for contrast-induced acute kidney injury (Allen, 2017) • 73 models for 28/30 day hospital readmission (Zhou, 2016) • 68 models for preeclampsia (De Kat, 2019) • 68 models for living donor kidney/iver transplant counselling (Haller, 2022) • 67 models for traumatic brain injury prognosis (Dijkland, 2019) • 64 models for suicide / suicide attempt (Belsher, 2019) • 61 models for dementia (Hou, 2019) • 58 models for breast cancer prognosis (Phung, 2019) • 52 models for pre‐eclampsia (Townsend, 2019) • 52 models for colorectal cancer risk (Usher-Smith, 2016) • 48 models for incident hypertension (Sun, 2017) • 46 models for melanoma (Kaiser, 2020) • 46 models for prognosis after carotid revascularisation (Volkers, 2017) • 43 models for mortality in critically ill (Keuning, 2019) Over 260 systematic reviews of clinical prediction models
  • 14. It is difficult to make predictions, especially about the future. quote often attributed to Niels Bohr, but true source remains controversial
  • 15. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 16. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Methods research and guidance
  • 17. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Methods research and guidance On a range of topics, including: • Sample size for development • Sample size for validation • Dealing with measurement error • Dealing with missing data • Dealing with competing risks • Multinomial/ordinal outcomes • Methods for validation • Reporting standards • Performance metrics • Predictor selection • Setting risk thresholds • Multicolinearity • Hyperparameter tuning • Class imbalance • Model updating • Guidance for systematic reviews • Risk of bias • Machine learning and AI
  • 18. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Methods research and guidance On a range of topics, including: • Sample size for development • Sample size for validation • Dealing with measurement error • Dealing with missing data • Dealing with competing risks • Multinomial/ordinal outcomes • Methods for validation • Reporting standards • Performance metrics • Predictor selection • Setting risk thresholds • Multicolinearity • Hyperparameter tuning • Handle class imbalance • Model updating • Guidance for systematic reviews • Risk of bias • Machine learning and AI
  • 19. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Faes et al. doi: 10.3389/fdgth.2022.833912 % studies indexed in Medline with the Medical Subject Heading (MeSH) term “Artificial Intelligence”
  • 20. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Approval of AI devices by FDA rapidly growing Source: https://tinyurl.com/khn4dvyb (accessed 20/11/2022)
  • 21. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Adversarial example https://bit.ly/2N4mQFo; https://bit.ly/2W7X9rF
  • 22. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden https://tinyurl.com/3knkuzs3
  • 23. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Skin cancer and rulers
  • 24. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden AI/ML MODELS USED IN PRACTICE AI/ML MODELS THAT WILL NEVER BE USED IN PRACTICE
  • 25. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Utopia Courtesy Anna Lohmann “SOMETHING USEFUL” Multivariable model
  • 26. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Prediction models are…
  • 27. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Prediction models are… • Expensive • Not one-size-fits-all • Many alternatives usually available • Need crash testing (“impact”) • Require regular MOT (“validation”) • Require regular maintenance (”updating”) • Require people to be trained how to operate them • Can be dangerous when wrongly used • Regulations apply
  • 28. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 29. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Van Royen et al. ERJ, 2022
  • 30. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden
  • 31. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Team science -- UMCU
  • 32. UHD Lecture, November 18 2022 Twitter: @MaartenvSmeden Email: M.vanSmeden@umcutrecht.nl Twitter: @MaartenvSmeden Slides available at: https://www.slideshare.net/MaartenvanSmeden