Maven is a build tool that manages projects and dependencies. It aims to make the build process easy and provide a uniform system. With Java 9, Maven faces challenges due to the module system's differences from the classpath. Specifically, the modulepath does not support all file types like the classpath. This causes issues for Maven which relies on dependencies being on the classpath. Additionally, automatic modules generated from JAR files can cause problems for projects. Maven cannot directly generate module descriptors but tools like Jdeps can assist with initial descriptors. Overall, while challenges exist, Maven can still be used for most projects with Java 9.