MySQL 5.6 introduces several new query optimization features over MySQL 5.5, including:
1) Filesort optimization for queries with a filesort but a short LIMIT, improving performance over 2x in one example.
2) Index Condition Pushdown which pushes conditions from the WHERE clause into the index tree evaluation, improving a query over 5x faster by reducing the number of rows accessed.
3) Other optimizations like Multi-Range Read which improve performance of queries that access multiple ranges or indexes in a single query. The document provides examples comparing execution plans and performance between MySQL 5.5 and 5.6 to demonstrate the benefits of the new optimization features.