1. Cellular respiration is the process that releases energy from food in the presence of oxygen. It involves the breakdown of glucose and other food molecules, capturing some energy to produce ATP and other compounds while releasing carbon dioxide and water.
2. ATP is the "energy currency" of cells. It is used to store and transport chemical energy within cells to power energy-requiring cellular processes. ATP is regenerated through catabolic reactions when its phosphate bonds are broken.
3. NADH and FADH2 act as electron carriers that shuttle energy extracted from nutrients to sites of ATP production through oxidative phosphorylation. NADPH similarly transports energy but for biosynthesis rather than ATP production.
This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
This PPT is meant for undergraduate students to clear the concepts of Microbial metabolism.
The presentation includes the basics of catabolism and anabolism
Describe flow of energy through living systems
Compare chemical processes of autotrophs and heterotrophs
Describe role of ATP in metabolism
Describe how energy released.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Describe flow of energy through living systems
Compare chemical processes of autotrophs and heterotrophs
Describe role of ATP in metabolism
Describe how energy released.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
2. Energy
• Energy: the capacity to do work
• Energy can exist in two states:
– Kinetic energy – energy of motion.
– Potential energy – stored energy.
• Chemical energy – potential energy
stored in bonds, released when bonds
are broken.
• Energy can be transformed form one
state to another.
• Energy can take many forms: chemical,
mechanical, electric current, heat, light
4. Miller, Kenneth R., and Joseph S. Levine.,( 2010), Chapter 9 : Cellular respiration and fermentation, Miller & Levine Biology, 9th Edition, Boston, 1034 pages.
When you are hungry, how do you feel?
Food serves as a source of energy
How does food get converted into a
usable form of energy?
A calorie is the amount of energy needed to raise the temperature of 1 gram
of water 1 degree Celsius.
For example, 1 gram of the sugar glucose releases 3811 calories of heat
energy when it is burned.
https://www.shutterstock.com/video/clip-21796042-stock-footage-macro-of-burning-sugar-with-flames.html
5. 5
Flow of Energy
• Most forms of energy can be converted to heat energy.
• Heat energy is measured in kilocalories.
• One calorie = the amount of heat required to raise the
temp of water by 1oC
1 kilocalorie (kcal) = 1000 calories (Cal.)
6. Cell break down food molecules gradually, capturing a little bit of chemical
energy at key steps.
This enables cells to use the energy stored in the chemical bonds of foods like
glucose to produce compounds such as ATP that directly power the activities of
the cell.
6O2 + C6H12O6 6CO2 + 6H2O + Energy
Cellular respiration is the process that releases energy from
food in the presence of oxygen.
What kind of EN
7. • The precursor is converted into a
product through a series of
metabolic intermediates called
metabolites.
Part 2 : BIOENERGETICS AND METABOLISM
• Metabolism is the sum of all the
chemical transformations taking place in
a cell or organism.
• Metabolism occurs through a series of
enzyme-catalyzed reactions that
constitute metabolic pathways)
Metabolism
8. 8
Two categories of cellular chemical reactions:
1.Anabolic Reactions
Build larger molecules for growth, repair, reproduction
Dehydration Synthesis Reactions
require energy and nutrients
2.Catabolic Reactions
Breakdown larger molecules
Hydrolysis Reactions
mobilize nutrients for energy making it available to the cell
8
Metabolism
9. Catabolism is the degradative phase of metabolism in which organic
nutrient molecules (carbohydrates, fats, and proteins) are converted
into smaller, simpler end products (such as lactic acid, CO2, NH3) and
also release energy, some of which is conserved in the formation of
ATP and reduced electron carriers (NADH, NADPH, and FADH2); the
rest is lost as heat.
In anabolism, also called biosynthesis, small, simple precursors are
built up into larger and more complex molecules, including lipids,
polysaccharides, proteins, and nucleic acids. Anabolic reactions
require an input of energy, generally in the form of the phosphoryl
group transfer potential of ATP and the reducing power of NADH,
NADPH, and FADH2.
Metabolism
10.
11. 11
Metabolism
Metabolism is the sum total of all anabolic and
catabolic reactions that occur in the cell
The metabolism of cells is carried out and controlled
by the enzymes
– There are catabolic enzymes – those that cleave larger
molecules into smaller ones
Ex. Hydrolysis Reactions
– There are also anabolic enzymes – those that assemble
smaller molecules into larger ones
Ex. Dehydration Reactions
11
13. 13
Regulation of Biochemical Pathways
Metabolism is tightly regulated
There is a delicate balance between all of the
reactions that take place in the cell
Metabolism is commonly regulated 3 ways:
1. Enzymatic competition for substrate
2. Gene regulation
3. Enzyme inhibition
13
14. ATP
• ATP is a molecule that is used as an Energy
Currency in cells.
• ATP is the molecule that cells use for store, transfer,
and provide energy.
– ATP’s can be broken down to provide energy for
endergonic reactions.
• The energy from ATP is used to fuel anabolic
reactions.
– recall: for growth, repair, and reproduction
https://www.youtube.com/watch?v=00jbG_cfGuQ
ATP & Respiration: Crash Course Biology #7
15. 15
ATP - Energy Currency of Cells
• ATP = Adenosine TriphosPhate
= + Adenosine (ribose and adenine— as same as RNA)
+ Three inorganic phosphates (functional group PO4)
16. 16
• ATP stores energy in the covalent bonds
between phosphates:
– Phosphates are highly negative, therefore:
• the phosphates repel each other
• much energy is required to keep the phosphates bound
to each other
• Energy is released when the bond between
two phosphates is broken
ATP - Energy Currency of Cells
19. 19
Other Functions of ATP
ATP regulates enzyme activity
Phosphorylation and dephosphorylation -
process of adding or removing phosphate groups
- can activate or deactivate enzymes
ATP serves as a source of phosphate groups
20. NADH and FADH2: The body’s energy shuttles
• When breaking down nutrients, metabolic reaction release
high-energy electrons.
• Further reactions transfer energy from these electrons to ATP.
• One major electron acceptor is NAD+, a derivative of the B
vitamin niacin.
• The other major electron acceptor is FAD, a derivative of the B
vitamin riboflavin. When FAD accepts 2 high-energy electrons,
it picks up 2 protons and forms FADH2.
21. • The metabolic pathways have several energy-
transfer points where an NAD+ accepts 2 high-
energy electrons and 2 hydrogen ions (2
protons- H+) to form NADH+H+.
NADH : The body’s energy shuttles
22. NADPH : An energy shuttle for biosynthesis
• Energy powers: the assembly of building into
complex molecules of carbohydrate, fat, and protein.
• NADPH, an energy-carrying molecule similar to
NADH, delivers much of the energy these
biosynthetic reactions require.
• Although both molecules are energy carriers, their
metabolic roles are vastly different. Whereas the
energy carries by NADH primarily produces ATP,
nearly all the energy carried by NADPH drives
biosynthesis.
• When a reaction transforms NADPH into NADP+,
NADPH release its cargo of two energetic electrons.
23. • Key concept ATP is the energy currency of the body. Your body
extracts energy from food to produce ATP.
• NADH and FADH2 Are hydrogen and electron carriers that shuttle
energy to ATP production sites. NAPH is also and electron carrier,
but it shuttles energy for anabolic processes.