This document discusses a gene called makorin. It contains 8 exons with a coding sequence of 1446 base pairs encoding 481 amino acids. It is located on the reverse DNA strand and is approximately 22.66 kilobases long. The document also compares the BLAST and BLAT bioinformatics tools, explaining that BLAST performs sequence alignments while BLAT is used to align queries against databases using short 4-11 mer matches.

1. 20
DB
2008/08/07
kaneko.satoko(at)ocha.ac.jp

3. molecular_function [GO:0003674]
molecular transducer activity [GO:0060089]
signal transducer activity [GO:0004871]
receptor activity [GO:0004872]
transmembrane receptor activity [GO:0004888]
G-protein coupled receptor activity [GO:0004930]
rhodopsin-like receptor activity [GO:0001584]

5. 22.66kb Reverse strand
8 exons, CDS 1446bp (481a.a.)

8. (5) processed (pseudo)gene,
unprocessed (pseudo)gene
a
a'
unprocessed gene
duplicated gene
a
mRNA splicing
a''
processed gene
pseudogene premature stop codon (insertion) (deletion)

9. ID ID

13. 1
[apple mark+C]
2 CotEditor
[apple mark+V]
makorin.fasta
blat
3 BLAST

14. 1
[apple mark+V]
2 Mus musculus
dna database
3 Search Tool BLAT
RUN
BLAT

16. [apple mark+A]
[apple mark+C]
CotEditor [apple mark
+C] makorin.blat

18. [Alignment Locations vs. Karyotype]
[Alignment Locations vs. Query]
query
[Alignment Summary]
query

19. query

24. (6)
BLAST (Basic Local Alignment Search Tool)
alignment
Arg Ser Val
Thr Ser Gly
Tyr Val Arg
5'-tacgtcaggta-3'
3'-atgcagtccat-5'
Met Gln Ser
Cys Ser Pro
Ala Val His
BLAT (Blast Like Alignment Tool)
query/database 4,11(amino acid, DNA)-mer
EST