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          DNA – Structure, Replication, Transcription, and Translation:
                         Molecular Biology of the Gene


                              DNA                            RNA
The three main parts are…


Shape…


Bases…


Does what…


Found where…




DNA and RNA are polymers of nucleotides


Draw and label a DNA single nucleotide below




Draw and label two DNA nucleotides bound together as a rung of the double helix




                                                     Modified from Ms. Saxe – Dr Fox’s ABlock
2

DNA is a double stranded-helix

Look carefully at the orientation of the sugar-phosphate backbones. What do you notice about
the direction of the two backbones?




     DNA replication depends on specific base pairing.
In DNA replication the strands separate and enzymes use each strand as a template to
assemble the new complementary strands.

                                                                               Fig. 10.4A




                                                     Modified from Ms. Saxe – Dr Fox’s ABlock
3




DNA replication: A closer look
DNA replication begins at specific cites on the double helix called ___________________,
where __________ start the process to replicate DNA. Replication occurs in both directions
(see figure below), however replication can only proceed in the __________direction.
Because of this there is a ____________strand and a ___________ strand. The enzyme
that splits the DNA apart is called __________________.


Why do you think that replication
bubbles usually start at bond
between adenine – thymine?




There will be a supplemental
homework emailed to you
which will give you more
details about DNA replication
and the enzymes involved.




                                                    Modified from Ms. Saxe – Dr Fox’s ABlock
4


            The flow of genetic information from DNA to RNA to protein


10.2   The DNA genotype is expressed as proteins, which provide the molecular basis for
       phenotypic traits.

Central Biology Concept: __________________

____________________________________

____________________________________

____________________________________

____________________________________

__________________________________                       Figure 10.6A

Check in question: In the information flow from DNA to protein, what are the functions of
transcription and translation?




10.3 Genetic information written in codons is translated into amino acid
     sequences.

                                                  On the RNA strand, each bracket contains
                                                  ____ nucleotides. _____ nucleotides are
                                                  called a _______, each codon represents
                                                  an amino acid.

                                                  There are 64 (43) possible code words which
                                                  is more than enough to code for the
                                                  _____amino acids. What does this mean?


Check in question: A particular protein is 100 amino acids long. How many nucleotides make
up the gene for this protein?


                                      STOP
                                 Before we go any
                                 further, go back
                                 and make sure you
                                 get what we have
10.4 The genetic code is the Rosetta stonefar. life
                                    done so of
                                                  Modified from Ms. Saxe – Dr Fox’s ABlock
5



                 Use the codon chart below to answer the following questions.


                                                           1. AUG is the start codon. What
                                                           amino acid does AUG represent
                                                           and how many start codons are
                                                           there?


                                                           2. How many stop codons are
                                                           there? What are they?



                                                           3. Translate this sequence:
                                                                  CCAUUUACG



4. In a set of twins, there was a mistake copying the section of the chromosome which you just
translated. In both situations uracil was replaced by thymine. Dan has the new sequence is
CCAUUCACG and Evan has the sequence CCACUUACG. Translate both of the new sequences
and compare them to the original sequence in question 3.

Translation of the original sequence __________________
Translation of Dan’s sequence       __________________
Translation of Evan’s sequence       __________________

Even though there was only one base change, what happened?



10.5 Transcription produces genetic messages in the form of RNA
Transcription is the process of transferring the genetic material from _______ to _______,
it occurs in the ______________.
                                                      Elongation




                                                                                   Fig. 10.9B



                                                      Modified from Ms. Saxe – Dr Fox’s ABlock
6

10.6 Eukaryotic RNA is processed before leaving the nucleus

The kind of RNA that encodes the amino acid sequence is called _________________
because it conveys genetic information from DNA to the translation machinery of a cell.

Processing of eukaryotic RNA (Fig 10.10)

In eukaryotes, newly transcribed RNA molecules are processed (modified) to make mature
mRNAs. In order to do this a _______ (an extra G) is added at the 5’ end and a
_______(multiple A’s) is added at the 3’ end. _______ is the removal of internal
noncoding sequences (_________).

                                                                   Introns vs. Exons

                                                        Many eukaryotic genes contain non-
                                                          coding        regions      called
                                                          ___________.

                                                        The coding regions are called _______.

                                                        Both introns and exons are transcribed.
                                                           Introns     are     removed       by
                                                           _________.

                                                        Mature mRNA do not contain introns.

                                                        Check in question: Explain why many
                                                           eukaryotic genes are longer than the
                                                           mRNA that leaves the nucleus.




10.7 Transfer RNA (tRNA) molecules serve as interpreters during translation.
A cell that is ready to carry out translation has in its cytoplasm a supply of amino acids, either
obtained from food or made from other chemicals. The amino acids themselves cannot
recognize the codons in the mRNA. tRNA must perform two tasks:

1.


2.


                                                         Modified from Ms. Saxe – Dr Fox’s ABlock
7



tRNA is made up of about 80 nucleotides
and consists of several loops. The bottom
loop contains the anticodon. The
anticodon in this picture is GCG and it
attracts the amino acid ARG (Arginine).

Check in question part 1: If a mRNA
anticodon is AAA what is the amino acid
that it would bind with? ** Use the codon
chart on page 5 of the packet to help you **

Check in question part 2: What is an
anticodon and what is its function?




10.8 Ribosomes build proteins

In chapter 4 we learned that ribosomes make proteins, much like a factory makes products.
Just like a factory has specific areas for production, a ribosome does too.

Ribosomes have a large and a small subunit and two binding sites:

________ – holds tRNA carrying growing polypeptide.

________ – holds tRNA carrying the next amino acid to be added.




          Check in question: How does a ribosome function during protein synthesis?

                                                     Modified from Ms. Saxe – Dr Fox’s ABlock
8




10.9 An initiation codon marks the start of an mRNA message

Translation can be divided into the same three phases as transcription:
   1.
   2.
   3.
Initiation occurs in two steps (see figure below). Looking at the pictures below, describe (in
your own words) what is happening in steps 1 and two.



                                   Figure
                                   10.13B




Check in question: What would happen if a genetic mutation changed a start codon to some
other codon?



10.10 Elongation adds amino acids to the polypeptide chain until a stop codon
      terminates translation.




                                                       Modified from Ms. Saxe – Dr Fox’s ABlock
9


                                           1. Codon recognition




                                           2. Peptide bond formation




                                           3. Translocation




10.11 Review: The flow of genetic information in the cell is DNA  RNA 
      Protein

Look back through section 10.6 to 10.14, working alone or with a partner, draw or summarize
the flow of genetic information. Be sure to include where transcription and translation happen
and the main products. Also, use this time to make note of any concepts you are confused
about so that you can ask questions.




                                                      Modified from Ms. Saxe – Dr Fox’s ABlock
10




10.12 Mutations can change the meaning of genes.

Deletion or insertion of a nucleotide within the Normal Gene
coding sequence will result in the shift in the       mRNA
reading frame and will change the amino acid         Protein
sequence after the mutation. This is also
known as
__________________________________                       Base
                                                  Substitution
______________ – creation of mutation

______________ – agents that induce
                                                        Base
mutagenesis
                                                     Deletion
Examples: ________________________

Most mutagens are also
____________(cancer causing agents).


                                 Viruses: Genes in Packages

10.13 Viral DNA may become part of the host chromosome

There are two types of reproductive cycles for viruses: ___________ and _____________



                                                          Modified from Ms. Saxe – Dr Fox’s ABlock
11




  Connections 10.18-10.20: Viruses threaten plants, animals and human health.

10.21 HIV is a retrovirus.




                                             Modified from Ms. Saxe – Dr Fox’s ABlock
11




  Connections 10.18-10.20: Viruses threaten plants, animals and human health.

10.21 HIV is a retrovirus.




                                             Modified from Ms. Saxe – Dr Fox’s ABlock
11




  Connections 10.18-10.20: Viruses threaten plants, animals and human health.

10.21 HIV is a retrovirus.




                                             Modified from Ms. Saxe – Dr Fox’s ABlock

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Dna rtt packet comprehensive (1 3 to start)

  • 1. 1 DNA – Structure, Replication, Transcription, and Translation: Molecular Biology of the Gene DNA RNA The three main parts are… Shape… Bases… Does what… Found where… DNA and RNA are polymers of nucleotides Draw and label a DNA single nucleotide below Draw and label two DNA nucleotides bound together as a rung of the double helix Modified from Ms. Saxe – Dr Fox’s ABlock
  • 2. 2 DNA is a double stranded-helix Look carefully at the orientation of the sugar-phosphate backbones. What do you notice about the direction of the two backbones? DNA replication depends on specific base pairing. In DNA replication the strands separate and enzymes use each strand as a template to assemble the new complementary strands. Fig. 10.4A Modified from Ms. Saxe – Dr Fox’s ABlock
  • 3. 3 DNA replication: A closer look DNA replication begins at specific cites on the double helix called ___________________, where __________ start the process to replicate DNA. Replication occurs in both directions (see figure below), however replication can only proceed in the __________direction. Because of this there is a ____________strand and a ___________ strand. The enzyme that splits the DNA apart is called __________________. Why do you think that replication bubbles usually start at bond between adenine – thymine? There will be a supplemental homework emailed to you which will give you more details about DNA replication and the enzymes involved. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 4. 4 The flow of genetic information from DNA to RNA to protein 10.2 The DNA genotype is expressed as proteins, which provide the molecular basis for phenotypic traits. Central Biology Concept: __________________ ____________________________________ ____________________________________ ____________________________________ ____________________________________ __________________________________ Figure 10.6A Check in question: In the information flow from DNA to protein, what are the functions of transcription and translation? 10.3 Genetic information written in codons is translated into amino acid sequences. On the RNA strand, each bracket contains ____ nucleotides. _____ nucleotides are called a _______, each codon represents an amino acid. There are 64 (43) possible code words which is more than enough to code for the _____amino acids. What does this mean? Check in question: A particular protein is 100 amino acids long. How many nucleotides make up the gene for this protein? STOP Before we go any further, go back and make sure you get what we have 10.4 The genetic code is the Rosetta stonefar. life done so of Modified from Ms. Saxe – Dr Fox’s ABlock
  • 5. 5 Use the codon chart below to answer the following questions. 1. AUG is the start codon. What amino acid does AUG represent and how many start codons are there? 2. How many stop codons are there? What are they? 3. Translate this sequence: CCAUUUACG 4. In a set of twins, there was a mistake copying the section of the chromosome which you just translated. In both situations uracil was replaced by thymine. Dan has the new sequence is CCAUUCACG and Evan has the sequence CCACUUACG. Translate both of the new sequences and compare them to the original sequence in question 3. Translation of the original sequence __________________ Translation of Dan’s sequence __________________ Translation of Evan’s sequence __________________ Even though there was only one base change, what happened? 10.5 Transcription produces genetic messages in the form of RNA Transcription is the process of transferring the genetic material from _______ to _______, it occurs in the ______________. Elongation Fig. 10.9B Modified from Ms. Saxe – Dr Fox’s ABlock
  • 6. 6 10.6 Eukaryotic RNA is processed before leaving the nucleus The kind of RNA that encodes the amino acid sequence is called _________________ because it conveys genetic information from DNA to the translation machinery of a cell. Processing of eukaryotic RNA (Fig 10.10) In eukaryotes, newly transcribed RNA molecules are processed (modified) to make mature mRNAs. In order to do this a _______ (an extra G) is added at the 5’ end and a _______(multiple A’s) is added at the 3’ end. _______ is the removal of internal noncoding sequences (_________). Introns vs. Exons Many eukaryotic genes contain non- coding regions called ___________. The coding regions are called _______. Both introns and exons are transcribed. Introns are removed by _________. Mature mRNA do not contain introns. Check in question: Explain why many eukaryotic genes are longer than the mRNA that leaves the nucleus. 10.7 Transfer RNA (tRNA) molecules serve as interpreters during translation. A cell that is ready to carry out translation has in its cytoplasm a supply of amino acids, either obtained from food or made from other chemicals. The amino acids themselves cannot recognize the codons in the mRNA. tRNA must perform two tasks: 1. 2. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 7. 7 tRNA is made up of about 80 nucleotides and consists of several loops. The bottom loop contains the anticodon. The anticodon in this picture is GCG and it attracts the amino acid ARG (Arginine). Check in question part 1: If a mRNA anticodon is AAA what is the amino acid that it would bind with? ** Use the codon chart on page 5 of the packet to help you ** Check in question part 2: What is an anticodon and what is its function? 10.8 Ribosomes build proteins In chapter 4 we learned that ribosomes make proteins, much like a factory makes products. Just like a factory has specific areas for production, a ribosome does too. Ribosomes have a large and a small subunit and two binding sites: ________ – holds tRNA carrying growing polypeptide. ________ – holds tRNA carrying the next amino acid to be added. Check in question: How does a ribosome function during protein synthesis? Modified from Ms. Saxe – Dr Fox’s ABlock
  • 8. 8 10.9 An initiation codon marks the start of an mRNA message Translation can be divided into the same three phases as transcription: 1. 2. 3. Initiation occurs in two steps (see figure below). Looking at the pictures below, describe (in your own words) what is happening in steps 1 and two. Figure 10.13B Check in question: What would happen if a genetic mutation changed a start codon to some other codon? 10.10 Elongation adds amino acids to the polypeptide chain until a stop codon terminates translation. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 9. 9 1. Codon recognition 2. Peptide bond formation 3. Translocation 10.11 Review: The flow of genetic information in the cell is DNA  RNA  Protein Look back through section 10.6 to 10.14, working alone or with a partner, draw or summarize the flow of genetic information. Be sure to include where transcription and translation happen and the main products. Also, use this time to make note of any concepts you are confused about so that you can ask questions. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 10. 10 10.12 Mutations can change the meaning of genes. Deletion or insertion of a nucleotide within the Normal Gene coding sequence will result in the shift in the mRNA reading frame and will change the amino acid Protein sequence after the mutation. This is also known as __________________________________ Base Substitution ______________ – creation of mutation ______________ – agents that induce Base mutagenesis Deletion Examples: ________________________ Most mutagens are also ____________(cancer causing agents). Viruses: Genes in Packages 10.13 Viral DNA may become part of the host chromosome There are two types of reproductive cycles for viruses: ___________ and _____________ Modified from Ms. Saxe – Dr Fox’s ABlock
  • 11. 11 Connections 10.18-10.20: Viruses threaten plants, animals and human health. 10.21 HIV is a retrovirus. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 12. 11 Connections 10.18-10.20: Viruses threaten plants, animals and human health. 10.21 HIV is a retrovirus. Modified from Ms. Saxe – Dr Fox’s ABlock
  • 13. 11 Connections 10.18-10.20: Viruses threaten plants, animals and human health. 10.21 HIV is a retrovirus. Modified from Ms. Saxe – Dr Fox’s ABlock