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IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
______________________________________________________________________________________
Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 288
A THEORETICAL STUDY ON PARTIALLY AUTOMATED METHOD
FOR (PROSTATE) CANCER PINPOINT USING MAGNETIC
RESONANCE IMAGING (MRI)
M.Venkatesh Kumar1
, P.Kalamani2
, M. ChithambaraThanu3
1
Sr. Lecturer, 2
Asst. Prof, 3
Asst. Prof.,Dept. Of CSE, SSEC, Bangalore, India.
Abstract
A Partially Automated method for (Prostate) Cancer pinpoint using Multi-parametric magnetic resonance imaging has been
proposed in this paper, which can be used in guiding surgery. A Random Walker (RW) algorithm has been analyzed with seed
initialization to perform (Prostate) cancer pinpoint using Magnetic Resonance Imaging (MRI). Segmentation can be done by
using Random Walker (RW) algorithm which has to be considered to be a fastest method. Random Walker (RW) method can be
used with multi-parametric magnetic resonance imaging (MRI) and then by using Support Vector Machine (SVM) method, we can
determine the seed points in a partially automated manner. By using this method, more weights to the image can be assigned in
order to produce improved segmentation process. The proposed method can also give high specificity rate without reducing the
sensitivity which is better than earlier methods and fisher sign test can be also used to find the statistical differences.
Index terms:Support Vector Machine, Random Walker, Magnetic Prediction, Magnetic Resonance.
---------------------------------------------------------------------***---------------------------------------------------------------------
1. INTRODUCTION
A (Prostate) cancer develops in a gland i.e. male
reproductive system. It is one of the typical cancers which
spreads in other parts of the human body especially bones
and lymph nodes. Pain while urinating, sexual intercourse
and erectile dysfunction are some of the symptoms of this
cancer. Initial treatment is more important which the
prostate specific antigen testing increases cancer detection,
but does not decreases mortality [3], [10].
Fig-1: Prostate Cancer in human body
1.1 Prostate Imaging
The imaging methods used for (Prostate) cancer detection
are Ultrasound (US) and Magnetic Resonance Imaging
(MRI). The main drawback of Ultrasound (US) technique is
poor tissue resolution, which cannot be used clinically. But
compared to Ultrasound (US), MRI (Good Soft tissue
Resolution) uses magnetic fields to locate and characterize
(prostate) cancer [7], [19]. Multi-parametric prostate
Magnetic Resonance Imaging (MRI) consists of 4 types
which are follows:
1. Weighed Imaging (WI).
2. Diffusion Weighed Imaging (DWI).
3. Magnetic Resonance Spectroscopic Imaging
(MRSI).
4. Dynamic Construct Enhanced Imaging (DCEI).
2. LITERATURE SURVEY
Accurate Automatic Analysis of Cardiac
Cineimages
In this automated approach, they are 3 steps for analyzing
the thickness and thickening of the images. First step is to
segment then inner and outer wall tissue borders by using
the geometric deformable model. In Second step, using
Laplace equation, point-to-point correspondence between
inner and outer borders of the tissue was found. In last step,
Gauss Markov Random Field (GGMRF) model is used to
reduce the errors. In this approach, the segmentation is
based upon the ROC (Receiver Operating Characteristic)
and DSC (Dice similarity Coefficients for higher accuracy
[12] – [25].
3. EXISTING METHOD & DRAWBACKS
In earlier method, manual and fully (i.e. supervised and
unsupervised) segmentation had been performed using
multi-parametric MRI. By using semi-supervised cancer
pinpoint, labeling of data requires laborious human
annotation. According to Tiwari et al., representation of
individual data is combined multi-kernel which is followed
by semi-supervised dimensionally reduction, incorporated to
a high dimensional data in a reduced space.
IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
______________________________________________________________________________________
Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 289
3.1 Drawbacks of Existing system
In previous method, Weighed and Apparent diffusion
coefficient method is used instead of Random Walker (RW)
and Support Vector Machine (SVM) method for prostate
cancer localization [Artan et al.]. Manual seeds are
initialized rather than all the multi-parametric images.
4. PROPOSED METHOD & ADVANTAGES
In the proposed method, Random Walker (RW) technique
can be used for image segmentation which is used in multi-
parametric images. This method combines multiple image
segmentation [Wattaya et al.] results in which each can be
obtained by using Random Walker (RW) algorithm after
varying the number of user assigned seeds. Then it is
compared with Locality preserving projections (LPP)
method of [Grady et al.] and [Levin et.al] for edge weights
by applying linear transformation to RGB color.
Fig- 2: Segmentation Process
4.1 Advantages of Proposed Method:
• To identify (Prostate) cancer pinpoint with multi-
parametric MRI.
• Automated Seed initialization for RW algorithm.
• Several MR image types are combined optimally
and automate the seed generation process for RW
algorithm using discriminative learning techniques.
4.2 Algorithm
Step1:Laplacian-Support Vector Machine (Lap-SVM) is
used to produce a rough estimate on tumor locations for a
given a set of multi-parametric MR images.
Step2:Isolated pixels are removed from Lap-SVM
(Laplacian-Support Vector Machine) output, and
eccentricity values are determined for each of the connected
components in the resulting binary image
Step 3: Applying erosion operation on the binary image.
Step4:Assigning a positive seed at the center of the
remaining connected component(s) and a negative seed to
the location corresponding to the minimum Lap-SVM
(Laplacian-Support Vector Machine) value in the
unthresholded Lap-SVM (Laplacian-Support Vector
Machine) output.
5. ARCHITECTURE
In previous work, segmentation method is designed by
combining conditional random fields (CRF) with a cost-
sensitive SVM, which allowed incorporating spatial
information in the segmentation process. Incorporation of
spatial information is achieved through seed points that are
selected via SVM (Support Vector Machine) in the proposed
method. These seed points allow us to accurately localize
desired regions, higher specificity and sensitivity rates
compared to (seeded) spatial algorithm in our segmentation
scheme.
List of Modules:
1. Normalization
2. Anisotropic Filtering
3. Multi-parametric RW
4. Seed Generation using Laplacian SVM
5.1 Normalization
Multi-parametric MRI dataset can be used, which can
consist of three different types of MR images. Each multi-
parametric component represents a particular anatomical
and functional response of the prostate gland. Feature
vectors used in our segmentation framework are the
intensity values of the multi-parametric MR images. The
prostate consists of various zones such as CG (Central
Gland) and PZ (Peripheral Zone). PZ (Peripheral Zone)
region is located at the back of the prostate gland, which is
close to the rectum [23- 27].
Fig-3: Normalization process
For each of the multi-parametric images, PZ (Peripheral
Zone) region intensities were normalized such that
intensities in the PZ (Peripheral Zone) region had zero mean
and unit standard deviation for all the training and testing
subjects for a particular multi-parametric image type. This
process brings intensities of different types of MR
(Magnetic Resonance) images within the same dynamic
range, improving the segmentation methods [5], [10], [11].
5.2 Anisotropic Filtering
Magnetic resonance images are typically corrupted by
thermal noise due to receiver coils. Therefore, many earlier
studies proposed various filtering schemes to remove noise
before doing any further processing on them [30]. However,
while suppressing the noise, we want to simultaneously
preserve the information-bearing structures such as edge
boundaries. Anisotropic filtering allows us to smooth PZ
(Peripheral Zone) regions of multi-parametric images
without blurring the tumor nodule edges. The diffusion
equation for an image u is given by,
(1)
Equation encourages smoothing within PZ (Peripheral
Zone) region while preserving tumor boundaries. This
method will not cause interregional blurring as often caused
IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
______________________________________________________________________________________
Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 290
by traditional smoothing techniques. Note that anisotropic
filtering needs to be applied on the median-filtered and
normalized images for a successful application as noted in
our earlier study [25-29].
5.3 Multi-Parametric RW
RW (Random Walker) algorithm is a seeded segmentation
technique that formulates the classical segmentation
problem in terms of a discrete combinatorial problem. An
edge connecting two vertices is denoted as eij. A weighted
graph has a value assigned to each edge called a weight
denoted by wij . In the original RW formulation and used
the typical Gaussian weighting function given
by, (2)
Where, gi indicates the image intensity at pixel i, and the
value of the scalar is selected based on experience. Linear
weighted combination of features yields a final image that
yields improved RW (Random Walker) segmentation for the
given set of seeds. Edge weights for the multi-parametric
problem wij can now be written as,
(3)
5.4 Seed Generation Using Laplacian SVM
In this algorithm, the Seeds are manually initialized.
Therefore, we have compared various methods, namely,
support vector machines (SVM), transductive support vector
machines (TSVM) and Laplacian support vector machines
(Lap-SVM), to develop a seed selection technique most
suited for (prostate) cancer pinpoint. SVM (Support Vector
Machine) method is used only for seed generation for the
RW algorithm, not the actual segmentation [15]. The
geometry of data is modeled as a
graph in which nodes represents the labeled and unlabeled
samples connected by weights wij resulting,
(4)
6. CONCLUSIONS
We presented a framework for automatically localizing
prostate cancer with multi-parametric MR images using a
new approach of partially supervised segmentation in this
paper. Proposed Random Walker [RW] method produce
improved segmentation results by assigning more weights to
the images. Our study show that significantly improved
segmentation results could be obtained with the proposed
method compared to earlier developed methods. Fisher’s
sign test can be also used to show improvements with our
method are statistically significant. Multiple initializations
for the optimum values increases the computation cost
slightly, and decreasing this computation is a subject of our
future study.
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IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308
______________________________________________________________________________________
Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 291
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A theoretical study on partially automated method

  • 1. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 ______________________________________________________________________________________ Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 288 A THEORETICAL STUDY ON PARTIALLY AUTOMATED METHOD FOR (PROSTATE) CANCER PINPOINT USING MAGNETIC RESONANCE IMAGING (MRI) M.Venkatesh Kumar1 , P.Kalamani2 , M. ChithambaraThanu3 1 Sr. Lecturer, 2 Asst. Prof, 3 Asst. Prof.,Dept. Of CSE, SSEC, Bangalore, India. Abstract A Partially Automated method for (Prostate) Cancer pinpoint using Multi-parametric magnetic resonance imaging has been proposed in this paper, which can be used in guiding surgery. A Random Walker (RW) algorithm has been analyzed with seed initialization to perform (Prostate) cancer pinpoint using Magnetic Resonance Imaging (MRI). Segmentation can be done by using Random Walker (RW) algorithm which has to be considered to be a fastest method. Random Walker (RW) method can be used with multi-parametric magnetic resonance imaging (MRI) and then by using Support Vector Machine (SVM) method, we can determine the seed points in a partially automated manner. By using this method, more weights to the image can be assigned in order to produce improved segmentation process. The proposed method can also give high specificity rate without reducing the sensitivity which is better than earlier methods and fisher sign test can be also used to find the statistical differences. Index terms:Support Vector Machine, Random Walker, Magnetic Prediction, Magnetic Resonance. ---------------------------------------------------------------------***--------------------------------------------------------------------- 1. INTRODUCTION A (Prostate) cancer develops in a gland i.e. male reproductive system. It is one of the typical cancers which spreads in other parts of the human body especially bones and lymph nodes. Pain while urinating, sexual intercourse and erectile dysfunction are some of the symptoms of this cancer. Initial treatment is more important which the prostate specific antigen testing increases cancer detection, but does not decreases mortality [3], [10]. Fig-1: Prostate Cancer in human body 1.1 Prostate Imaging The imaging methods used for (Prostate) cancer detection are Ultrasound (US) and Magnetic Resonance Imaging (MRI). The main drawback of Ultrasound (US) technique is poor tissue resolution, which cannot be used clinically. But compared to Ultrasound (US), MRI (Good Soft tissue Resolution) uses magnetic fields to locate and characterize (prostate) cancer [7], [19]. Multi-parametric prostate Magnetic Resonance Imaging (MRI) consists of 4 types which are follows: 1. Weighed Imaging (WI). 2. Diffusion Weighed Imaging (DWI). 3. Magnetic Resonance Spectroscopic Imaging (MRSI). 4. Dynamic Construct Enhanced Imaging (DCEI). 2. LITERATURE SURVEY Accurate Automatic Analysis of Cardiac Cineimages In this automated approach, they are 3 steps for analyzing the thickness and thickening of the images. First step is to segment then inner and outer wall tissue borders by using the geometric deformable model. In Second step, using Laplace equation, point-to-point correspondence between inner and outer borders of the tissue was found. In last step, Gauss Markov Random Field (GGMRF) model is used to reduce the errors. In this approach, the segmentation is based upon the ROC (Receiver Operating Characteristic) and DSC (Dice similarity Coefficients for higher accuracy [12] – [25]. 3. EXISTING METHOD & DRAWBACKS In earlier method, manual and fully (i.e. supervised and unsupervised) segmentation had been performed using multi-parametric MRI. By using semi-supervised cancer pinpoint, labeling of data requires laborious human annotation. According to Tiwari et al., representation of individual data is combined multi-kernel which is followed by semi-supervised dimensionally reduction, incorporated to a high dimensional data in a reduced space.
  • 2. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 ______________________________________________________________________________________ Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 289 3.1 Drawbacks of Existing system In previous method, Weighed and Apparent diffusion coefficient method is used instead of Random Walker (RW) and Support Vector Machine (SVM) method for prostate cancer localization [Artan et al.]. Manual seeds are initialized rather than all the multi-parametric images. 4. PROPOSED METHOD & ADVANTAGES In the proposed method, Random Walker (RW) technique can be used for image segmentation which is used in multi- parametric images. This method combines multiple image segmentation [Wattaya et al.] results in which each can be obtained by using Random Walker (RW) algorithm after varying the number of user assigned seeds. Then it is compared with Locality preserving projections (LPP) method of [Grady et al.] and [Levin et.al] for edge weights by applying linear transformation to RGB color. Fig- 2: Segmentation Process 4.1 Advantages of Proposed Method: • To identify (Prostate) cancer pinpoint with multi- parametric MRI. • Automated Seed initialization for RW algorithm. • Several MR image types are combined optimally and automate the seed generation process for RW algorithm using discriminative learning techniques. 4.2 Algorithm Step1:Laplacian-Support Vector Machine (Lap-SVM) is used to produce a rough estimate on tumor locations for a given a set of multi-parametric MR images. Step2:Isolated pixels are removed from Lap-SVM (Laplacian-Support Vector Machine) output, and eccentricity values are determined for each of the connected components in the resulting binary image Step 3: Applying erosion operation on the binary image. Step4:Assigning a positive seed at the center of the remaining connected component(s) and a negative seed to the location corresponding to the minimum Lap-SVM (Laplacian-Support Vector Machine) value in the unthresholded Lap-SVM (Laplacian-Support Vector Machine) output. 5. ARCHITECTURE In previous work, segmentation method is designed by combining conditional random fields (CRF) with a cost- sensitive SVM, which allowed incorporating spatial information in the segmentation process. Incorporation of spatial information is achieved through seed points that are selected via SVM (Support Vector Machine) in the proposed method. These seed points allow us to accurately localize desired regions, higher specificity and sensitivity rates compared to (seeded) spatial algorithm in our segmentation scheme. List of Modules: 1. Normalization 2. Anisotropic Filtering 3. Multi-parametric RW 4. Seed Generation using Laplacian SVM 5.1 Normalization Multi-parametric MRI dataset can be used, which can consist of three different types of MR images. Each multi- parametric component represents a particular anatomical and functional response of the prostate gland. Feature vectors used in our segmentation framework are the intensity values of the multi-parametric MR images. The prostate consists of various zones such as CG (Central Gland) and PZ (Peripheral Zone). PZ (Peripheral Zone) region is located at the back of the prostate gland, which is close to the rectum [23- 27]. Fig-3: Normalization process For each of the multi-parametric images, PZ (Peripheral Zone) region intensities were normalized such that intensities in the PZ (Peripheral Zone) region had zero mean and unit standard deviation for all the training and testing subjects for a particular multi-parametric image type. This process brings intensities of different types of MR (Magnetic Resonance) images within the same dynamic range, improving the segmentation methods [5], [10], [11]. 5.2 Anisotropic Filtering Magnetic resonance images are typically corrupted by thermal noise due to receiver coils. Therefore, many earlier studies proposed various filtering schemes to remove noise before doing any further processing on them [30]. However, while suppressing the noise, we want to simultaneously preserve the information-bearing structures such as edge boundaries. Anisotropic filtering allows us to smooth PZ (Peripheral Zone) regions of multi-parametric images without blurring the tumor nodule edges. The diffusion equation for an image u is given by, (1) Equation encourages smoothing within PZ (Peripheral Zone) region while preserving tumor boundaries. This method will not cause interregional blurring as often caused
  • 3. IJRET: International Journal of Research in Engineering and Technology eISSN: 2319-1163 | pISSN: 2321-7308 ______________________________________________________________________________________ Volume: 03 Issue: 01 | Jan-2014, Available @ http://www.ijret.org 290 by traditional smoothing techniques. Note that anisotropic filtering needs to be applied on the median-filtered and normalized images for a successful application as noted in our earlier study [25-29]. 5.3 Multi-Parametric RW RW (Random Walker) algorithm is a seeded segmentation technique that formulates the classical segmentation problem in terms of a discrete combinatorial problem. An edge connecting two vertices is denoted as eij. A weighted graph has a value assigned to each edge called a weight denoted by wij . In the original RW formulation and used the typical Gaussian weighting function given by, (2) Where, gi indicates the image intensity at pixel i, and the value of the scalar is selected based on experience. Linear weighted combination of features yields a final image that yields improved RW (Random Walker) segmentation for the given set of seeds. Edge weights for the multi-parametric problem wij can now be written as, (3) 5.4 Seed Generation Using Laplacian SVM In this algorithm, the Seeds are manually initialized. Therefore, we have compared various methods, namely, support vector machines (SVM), transductive support vector machines (TSVM) and Laplacian support vector machines (Lap-SVM), to develop a seed selection technique most suited for (prostate) cancer pinpoint. SVM (Support Vector Machine) method is used only for seed generation for the RW algorithm, not the actual segmentation [15]. The geometry of data is modeled as a graph in which nodes represents the labeled and unlabeled samples connected by weights wij resulting, (4) 6. CONCLUSIONS We presented a framework for automatically localizing prostate cancer with multi-parametric MR images using a new approach of partially supervised segmentation in this paper. Proposed Random Walker [RW] method produce improved segmentation results by assigning more weights to the images. Our study show that significantly improved segmentation results could be obtained with the proposed method compared to earlier developed methods. Fisher’s sign test can be also used to show improvements with our method are statistically significant. Multiple initializations for the optimum values increases the computation cost slightly, and decreasing this computation is a subject of our future study. REFERENCES [1] American Cancer Society, Surveillance and Health Policy Research, 2010. [2] B. Turkbey, P.S. Albert, K. Kurdziel, P. L. Choyke, “Imaging localized prostate cancer: current approaches and new developments,” American Journal of Roentgenology, vol. 192, no. 6, pp. 1471-1480, June 2009. [3] H. Ito, K. Kamoi, K. Yokoyama, K. Yamada, T. Nishimura, “Visualization of prostate cancer using dynamic contrast-enhanced MRI: comparison with transrectal power doppler ultrasound,” British Journal of Radiology, vol. 76, no. 909, pp. 617-624, Sep. 2003. [4] F. A. van Dorsten, M. van der Graaf, M.R. Engelbrecht, G.J. van Leenders, A. Verhofstad, M. Ripkema, J. J. de la Rosette, A. Heerschap, “Combined quantitative enhanced MR imaging and (1)H MR spectroscopic imaging of human prostate cancer,” Journal of Magnetic Resonance Imaging, vol. 20, no. 2, pp. 279-287, Aug. 2004. [5] J. Futterer, S. Heijmink, T. W. Scheenen, J. Veltman, H. J. Huisman, Vos P, C.A. Hulsbergen-Van de Kaa, J. A. Witjes, P. F. Krabbe, A. Heerschap, J. O. Barentsz, “Prostate cancer localization with dynamic contrastenhanced MR imaging and Proton MR spectroscopic imaging,” Radiology, vol. 241, no. 2, pp. 449-458, Nov. 2006. [6] N. Altaf, L. Daniels, P. Morgan, J. Lowe, J. Gladman, S. MacSweeney, A. Moody, and D. Auer, “Cerebral white matter hyperintense lesions areassociated with unstable carotid plaques,” Eur. J. Vasc. and Endovasc. Surg., vol. 31, pp. 8–13, 2006. [7] Z. Lao, D. Shen, A. Jawad, B. Karacali, D. Liu, E. Melhem, R. Bryan, and C. Davatzikos, “Automated segmentation of white matter lesions in 3D brain MRI, using multivariate pattern classification,” in Proc. IEEE Int. Symp. Biomed. Imaging (ISBI), 2006, pp. 307–310. [8] P. Anbeek, K. L. Vincken,M. J. van Osch, R. H. Bisschops, and J. van der Grond, “Automatic segmentation of different-sized white matter lesions by voxel probability estimation,” Med. Image Anal., vol. 8, no. 3, pp. 205– 215, 2004. [9] P. Anbeek, K. Vincken, M. van Osch, R. Bisschops, and J. van der Grond, “Probabilistic segmentation ofwhite matter lesions inMRimaging,” NeuroImage, vol. 21, no. 3, pp. 1037–44, 2004. [10] R. de Boer, F. van der Lijn, H. A. Vrooman,M.W. Vernooij, M. A. Ikram, M. M. Breteler, andW. J. Niessen, “Automatic segmentation of brain tissue andwhite matter lesions in MRI,” in Proc. IEEE Int. Symp. Biomed. Imag., 2007, pp. 652–655.
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