CIP Genebank and GLIS DOI's - July 2020

1. The Good, the Bad, and the
Ugly of GLIS-DOIs:
implementations at CIP
Noelle Anglin and Edwin Rojas

2. CIP Genebank
• One of world’s largest in vitro genebank
• In vitro started in the early ‘80s
• ~12,000 accessions maintained in vitro
• Mostly Annex 1 crops
• All collections held in trust for ITPGRFA
• Distribute collections freely, globally with SMTA for
research, training and breeding

3. Clonal Collections
CULTIVATED
SWEETPOTATO
• 6,981 accessions
• One species
• Reference genome ??
• Virtually all 6X
ANDEAN ROOT &
TUBERS
• 2,031 accessions, 7
crops
• 1 reference genome
•CULTIVATED POTATO
• 4,845 accessions
• 7 species/9 taxa
• Reference genome
• 2X (11%), 3X (4%), 4X
(85%), 5X (<1%)

4. Seed Collections
WILD SWEETPOTATO
RELATIVES
• 1,092 accessions
• 67 species/19
countries
• 2X, 4X, 6X
ANDEAN ROOT & TUBERS
• 495 Wilds + maca & ahipa
•WILD POTATO
RELATIVES
• 2,329 accessions
• 140 species/9
countries
• 2X, 3X, 4X, 5X

5. First out of the Gate -
2017
First assigned GLIS DOI
for CG genebanks CIP -
ulloco - doi:10.18730/11

6. Crop/#Accs Potato Sweetpotat
o
ARTC Total
Inactive
accs with
DOIs
247 5 0 252
DOIs in
trust
collection
7174 8059 2526 17,759
99.93% of our
active
collection has
a GLIS- DOI
assigned
GLIS DOIs in CIP Genebank Collection

7. Genebank
Catalogs

8. GLIS DOIs in the
genebank
Cyro vials
In Vitro Distributions

9. Seed Packets Herbarium Specimens

10. GLIS -
DOIs
on
Website –
order tool
https://cipotato.org/genebankcip/

11. Germplasm distribution – List of materials for clients

12. DOIs EASY-SMTA

14. Capacity Building Efforts
CePaCT – Fiji
 Promote use of DOIs
 ICRAF
 ILRI
 CePaCT
 CIP Breeding
 CIP Breeding team
 CIP – Ghana – 279
accs
 CIP – 100 best bets
 CIP – 170 potato accs -
BSF

15. The Good
• Complete adoption in the
CIP genebank
• Permanent ID for each
accession
• GLIS allow linkage of DOIs
between genebanks
• GLIS periodically queries
internet to link DOIs
automatically to
published datasets or
publications
• GLIS link DOIs
automatically with other
databases like Genesys,
FAO WIEWS, Svalbard and
GRIN-Global

16. The Bad and Ugly
• Minting GLIS DOIs at the accession level is quick - support from FAO (Marco
Marsella) but linking GLIS DOIs between genebanks - manual data curation
• CIP and CePaCT linked only 106 sweetpotato accessions
• Acquisition data and basic passport is required which can be tough for old
accessions without much data
• Linking GLIS DOIs to publications or datasets is not automatic (GLIS periodically
queries internet)
• GLIS DOIs not in references then it’s a slower/manual process
• Mostly breeding accessions (~5K) conserved in the genebank do not have GLIS
DOIs – slower adoption from breeders
• Require compliance and understanding by users (distribution recipient or
provider) - i.e. - national genebank just sent the accessions list but without GLIS
DOIs.
• Standardization on how users employ GLIS DOIs?

17. THANKS for your ATTENTION