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Bob Eisenberg
Penn State August 2016
Electricity is Different
‘Charge’ is an Abstraction
with
VERY different Physics
in different systems
Available as DOI: 10.13140/RG.2.1.2584.8569
at implicit link and at explicit link
https://www.researchgate.net/publication/306119626_Electricity_is_Different_August_2016_Penn_State_Mathematics
For me (and maybe few others)
Cezanne’s
Mont Sainte-Victoire*
vu des Lauves
3
*one of two at Philadelphia Museum of Art
is a
See the fraternal twins
(i.e., not identical)
in the
Philadelphia Museum of Art
it is worth a visit,
and see the Barnes as well
Incomparable
Barnes Foundation
Philadelphia
Continuity of Current is
a Miracle because
It is EXACT and UNIVERSAL
even though
Physics of Current Flow
Varies Profoundly
Electricity is Different
One percent change in density does
almost nothing
8
Electricity is Different
Density and Concentration Fields
are
Weak
The Electric Field is Strong
One percent change in charge
lifts the Earth,
9
slight paraphrase of third paragraph, p. 1-1 of
Feynman, R. P., R. B. Leighton, and M. Sands. 1963. The
Feynman: Lectures on Physics, Mainly Electromagnetism
and Matter. New York: Addison-Wesley Publishing Co.,
also at http://www.feynmanlectures.caltech.edu/II_toc.html.
If you were standing at arm’s length from someone and
each of you had
One percent more electrons than protons,
the force
would lift the
Entire Earth!
The Electric Field is Strong
Electricity is Different
 
1
2
0
0
0 0
is electric field, is magnetic field
is the current of particles with mass
is charge density (of all types)
is the permittivity of a vacuum
is the permeability of a vacuum
velocity o



 


E B
J
f light (!)
is the operator
is the operator




curl
divergence
0


 E 0 B
t

  

B
E
{
0 0 0
t
  

  

E
B J
Maxwell Equations
are Universal and Exact
Displacement
Current
Everywhere!
Inside atoms
What is this?
NOT exact
NOT universal
What is this?
NOT exact
NOT universal
Electricity is Different
As written by Heaviside, using Gibbs notation
Generalized Current
is
Conserved
0 0 0
t
  

  

E
B J
Displacement
Current
Everywhere!
Inside Atoms
Maxwell Equation
0
0; so, 0
t

      
 
E
B J
1 44 2 4 43
Vector Identity Conservation law
Generalized Current
EXACT & UNIVERSAL
What is this?
NOT exact
NOT universal
0 0 0
t
  

  

E
B JMaxwellEquation implies
0
t




E
J is conserved EXACTLY and UNIVERSALLY
0
t




E
J
is conserved EXACTLY and UNIVERSALLY
0 t  E
Technical Comment
Description of charge  is problematic because it exists in so many forms with such
complex properties. Universal representation of  does not exist!
Conservation of current does NOT depend on the properties of charge.
Conservation of current depends on the existence of J but not on its properties.
J exists if magnetism B exists.
Displacement Current occurs in vacuum. Atoms and matter are mostly
vacuum. Only nuclei of atoms contain mass and they are tiny radius 10-15 m,
atom is 10-10 m. Volume of nucleus/volume of atom is about 10-15.
Continuity of Current is Exact and Universal
no matter what carries the current
even though
Physics of Charge Flow
Varies Profoundly
even Creating Plasmas!
Maxwell Equations are
Special
‘Charge’ is an Abstraction
with
VERY different Physics
in different systems
*
di E t  When we unplug a
computer power supply,
we often
CREATE
SPARKS,
i.e., a PLASMA,
a NEW KIND
of current flow
Mathematics of Continuity
in Maxwell equations can
Create New Kind of Physics,
New Kind of Charge
Physics of Charge Flow
Varies Profoundly
but
Conservation of Current is
EXACT and UNIVERSAL
*
i E t  
‘Charge’ is an Abstraction
with different Physics in different systems
but Conservation of Current is EXACT and UNIVERSAL
No matter what ‘charge’ carries the current!
Discussed in Detail in http://arxiv.org/abs/1502.07251
  i D t
D = permittivity  E
Ag AgClAg AgCl
‘Charge’ is an Abstraction
with different Physics
in different systems
but Conservation of Current is
EXACT and UNIVERSAL
No matter what ‘charge’ carries the current!
Electrodynamics
and
Ions in Chemistry
20
Applied Electric Field ZERO
Applied Electric Field
NOT ZERO
Law of Mass Action
is how chemists have described chemicals,
not flows
Page 21
f
b
k
k
A Bˆ ˆ ˆ†‡ ˆ ˆˆ
       ;f b
d d
A k A B k B
dt dt
   
k is constant
[ A] means the activity or approximately the concentration of species A,
i.e., the number density of A
“ … incomplete truths
learned on the way
may become ingrained
and taken as the whole truth….…
what is true
and what is only sometimes true
will become confused.”
Richard Feynman
from p.15-61 “The Feynman: Lectures on Physics, Mainly
Electromagnetism and Matter. Vol. 2” 1963, New York: Addison-
Wesley Publishing Co., also at available on line
Page 23
[X] means the concentration, really activity of species Z, i.e., concentration is the number density
xy
yx zy
kk yz
k k
X Y Z  
   
   
net
xy xy yx
xy yx
xy x xy y yx
J J J
k X k Y
I z Fk X z Fk Y
 
 
 
Law of Mass Action
is about
Conservation of Mass and Matter
It is not about conservation of charge
Page 24
[X] means the concentration, really activity of species Z, i.e., concentration is the number density
xy
yx zy
kk yz
k k
X Y Z  
    0xy x xy y yx
I z Fk X z Fk Y  
0xy
I 
25
17
10
under all conditions
AB DEI I



Kirchoff Current Law
requires
ALWAYS , or so
Kirchoff Current Law
and
Maxwell Equations
are nearly the same thing
Bhat & Osting (2011). IEEE Trans Antennas and Propagation 59: 3772-3778
Heras (2007) American Journal of Physics 75: 652-657
Heras (2011) American Journal of Physics 79: 409
Itzykson & Zuber Quantum Field Theory (1990) p. 10
26
‘Current-in’
does not automatically equal
‘Current-out’
in Rate Models
if rate constants are independent
and
Currents are Uncorrelated
AB DE
AB BC CD DE
I I
k k k k
A B C D E
but Kirchoff Current Law
ˆ ˆ ˆ† ˆ ˆ ˆ† ˆ ˆ ˆ† ˆ ˆ ˆ †‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ
requires
DEABI = I
AB DEI I
Page 27
Correlation
between currents
is in fact
ALWAYS
0.999 999 999 999 999 999
because
Continuity of Current is Exact
Kirchoff Continuity of Current Law
including displacement current
is another form of Maxwell’s Equations
Heras, J.A.: Am J Phys 75: 652 (2007); Eur J Phys 30: 845 (2009); Am J Ph79: 409 (2011)
Electricity is Different
Page 28
Engineering
is about
Signal Flow
not chemicals
Page 29
Chemistry
is about
Chemicals
not signals
How can this be?
Page 30
Maxwell’s Equations
Kirchoff’s Current Law
compute
Signals
from Conservation of Charge
and
Continuity of Current,
including displacement current
31
Parameterization is not Possible
under more than one condition
Rate constants chosen at one boundary charge or one potential
cannot work for different charges or potentials
Currents in Rate Models
are
Independent of Charge and Potential
but
in the real world
Currents depend on Charge and Potential
Cause of Frustration
Biochemical Models are
Rarely TRANSFERRABLE
Do Not Fit Data
even approximately
in more than one solution*
Editors: Charlie Brenner, Angela Hopp
American Society for Biochemistry and
Molecular Biology
*i.e., in more than one concentration or type of salt, like Na+Cl− or K+Cl
−
Note: Biology occurs in different solutions from those used in most measurements
Title chosen by Editor Charlie Brenner
32
ASBMB Today (2014) 13:36-38
extended in http://arxiv.org/abs/1409.0243
Physical Chemists are
Frustrated by Real Solutions
35
All of Biology occurs in Salt Solutions
of definite composition and concentration
and that matters!
Salt Water is the Liquid of Life
Pure H2O is toxic to cells and molecules!
Salt Water is a Complex Fluid
Main Ions are Hard Spheres, close enough
Sodium Na+ Potassium K+ Calcium Ca2+ Chloride Cl
-
3 Å
K+Na+ Ca++ Cl
-
“Sometimes it is necessary
to put a veil
on the past,
For the Sake of the Future”
Henry Clay, the Essential American
p. 375 D.S. & J.T. Heidler
History of Derivations of Law of Mass Action
37
Learned from Doug Henderson, J.-P. Hansen, Stuart Rice, among others…Thanks!
Ions
in a solution are a
Highly Compressible Plasma
Central Result of Physical Chemistry
although the
Solution is Incompressible
Free energy of an ionic solution is mostly determined by the
Number density of the ions.
Density varies from 10-11 to 101M
in typical biological system of proteins, nucleic acids, and channels.
Electrolytes are Complex Fluids
38
Treating a
Complex Fluid
as if it were a
Simple Fluid
will produce
Elusive Results
39
It is not surprising that
Inconsistent Treatments
of ionic solutions
have been so
Unsuccessful
despite more than a century of work by fine scientists
and mathematicians
“It is still a fact that over the last decades,
it was easier to fly to the moon
than to describe the
free energy of even the simplest salt
solutions
beyond a concentration of 0.1M or so.”
Kunz, W. "Specific Ion Effects"
World Scientific Singapore, 2009; p 11.
Werner Kunz:
“It is still a fact that over the last decades,
it was easier to fly to the
moon
than to describe the
free energy
of even the simplest salt
solutions
beyond a concentration of 0.1M or so.”
Kunz, W. "Specific Ion Effects"
World Scientific Singapore, 2009; p 11.
Werner Kunz
The classical text of Robinson and Stokes
(not otherwise noted for its emotional content)
gives a glimpse of these feelings when it says
“In regard to concentrated solutions,
many workers adopt a counsel of
despair, confining their interest to
concentrations below about 0.02 M, ... ”
p. 302 Electrolyte Solutions (1959) Butterworths , also
Dover (2002)
Good Data
4
43
It is difficult to even define
in a unique way
Properties of One Ion
when
Tremendous Opportunity for Applied Mathematics
Everything
Interacts
with
Everything
Electrolytes are Complex Fluids
44
After 690 pages and 2604 references, properties of
SINGLE Ions
are
Elusive*
because
Every Ion
Interacts
with
Everything
*’elusive’ is in the authors’ choice in the title
but emphasis is added
Hünenberger & Reif (2011)
“Single-Ion Solvation
… Approaches to Elusive* Thermodynamic Quantities”
45
Everything
Interacts
with
Everything
Ions in Water are the Liquid of Life
They are not ideal solutions
For Modelers and Mathematicians
Tremendous Opportunity for Applied Mathematics
because
‘law’ of mass action assumes nothing interacts
Chun Liu’s Energetic Variational Principle
EnVarA
1. >139,175 Data Points [Sept 2011] on-line
IVC-SEP Tech Univ of Denmark
http://www.cere.dtu.dk/Expertise/Data_Bank.aspx
2. Kontogeorgis, G. and G. Folas, 2009:
Models for Electrolyte Systems. Thermodynamic
John Wiley & Sons, Ltd. 461-523.
3. Zemaitis, J.F., Jr., D.M. Clark, M. Rafal, and N.C. Scrivner,
1986,
Handbook of Aqueous Electrolyte
Thermodynamics.
American Institute of Chemical Engineers
4. Pytkowicz, R.M., 1979,
Activity Coefficients in Electrolyte Solutions. Vol. 1.
Boca Raton FL USA: CRC. 288.
Good Data
Compilations of Specific Ion Effect
47
Mathematics of Chemistry
must deal
Naturally
with
Interactions
Everything Interacts
‘Law of Mass Action’ assumes nothing interacts
So this is a great opportunity for new mathematics and applications!
Page 48
‘Law’ of Mass Action
including
Interactions
From Bob Eisenberg p. 1-6, in this issue
Variational Approach
EnVarA
1
2- 0E 
 
 
6 7 8 6 7 8r
r r
x u
Conservative Dissipative
Mathematics
of
Interactions
in
Complex Fluids
49
Shielding
is a defining property of
Complex Fluids
It is VERY hard to Simulate at Equilibrium
and (in my opinion)
IMPOSSIBLE to Simulate in nonequilibrium
Like Batteries or Nerve Fibers
because flows involve
Far Field (macroscopic) boundaries
50
Shielding Dominates
Electric Properties of Channels,
Proteins, as it does Ionic Solutions
Shielding is ignored in traditional treatments
of Ion Channels and of Active Sites of proteins
Rate Constants Depend on Shielding
and so
Rate Constants Depend on Concentration and Charge
Main Qualitative Result
51
Main Qualitative Result
Shielding in Gramicidin
Hollerbach & Eisenberg
Reconciling
Mass Action
and
Maxwell/Kirchoff
will no doubt be a
Long Journey
“ … incomplete truths
learned on the way
may become ingrained
and taken as the whole truth….…
what is true
and what is only sometimes true
will become confused.”
Richard Feynman
from p.15-61 “The Feynman: Lectures on Physics, Mainly
Electromagnetism and Matter. Vol. 2” 1963, New York: Addison-
Wesley Publishing Co., also at available on line
“Sometimes it is necessary
to put a veil
on the past,
For the Sake of the Future”
Henry Clay, the Essential American
p. 375 D.S. & J.T. Heidler
History of Derivations of Law of Mass Action
“Journey
of a thousand miles
starts
with a single step”
in the right direction,
I beg to add to this Chinese
saying
As a Chicago Surgeon put it
You better head in the
right direction,
if you want to get anywhere
That direction needs to include the
Electric Field
calculated and calibrated,
global and local,
if the journey is ever to end,
in my view.
58
Replacement of
“Law of Mass Action”
is
Feasible for
Ionic Solutions
using the
All Spheres
(primitive = implicit solvent model of ionic solutions)
and
Theory of Complex Fluids
‘Law’ of Mass Action
including
Interactions
From Bob Eisenberg p. 1-6, in this issue
Variational Approach
EnVarA
1
2- 0E 
 
 
6 7 8 6 7 8
r r
x u
Conservative Dissipative
60
Energetic Variational Approach
allows
accurate computation of
Flow and Interactions
in Complex Fluids like Liquid Crystals
Engineering needs Calibrated Theories and Simulations
Engineering Devices almost always use flow
Classical theories and Molecular Dynamics
have difficulties with flow, interactions,
and complex fluids
61
Energetic Variational Approach
EnVarA
Chun Liu, Rolf Ryham, and Yunkyong Hyon
Mathematicians and Modelers: two different ‘partial’ variations
written in one framework, using a ‘pullback’ of the action integral
} }
1
2 0
E 
 

 
'' Dissipative'Force'Conservative Force
r r
x u
Action Integral, after pullback Rayleigh Dissipation Function
Field Theory of Ionic Solutions: Liu, Ryham, Hyon, Eisenberg
Allows boundary conditions and flow
Deals Consistently with Interactions of Components
Composite
Variational Principle
Euler Lagrange Equations
Shorthand for Euler Lagrange process
with respect to
r
x
Shorthand for Euler Lagrange process
with respect to
r
u
2
,
= , = ,
i i i
B i i j j
B i
i n p j n p
D c c
k T z e c d y dx
k T c


    
 
   
 
 
  =
Dissipative
r r%
1 4 4 4 4 4 4 4 4 4 2 4 4 4 4 4 4 4 4 4 3
,
= = , ,
0
, , =
1
log
2 2
i
B i i i i i j j
i n p i n p i j n p
c
k T c c z ec c d y dx
d
dt
    
  
   
    

    
Conservative
r r%
6 4 4 4 4 4 4 4 4 4 4 44 7 4 4 4 4 4 4 4 4 4 4 4 48
Hard Sphere
Terms
Permanent Charge of proteintime
ci number density; thermal energy; Di diffusion coefficient; n negative; p positive; zi valence; ε dielectric constantBk T
Number Density
Thermal Energy
valence
proton charge
Dissipation Principle
Conservative Energy dissipates into Friction
= ,
0
2
1
22
i i
i n p
z ec 

 
 
  
 
 
Note that with suitable boundary conditions
62
63
} }
1
2 0
E 
 

 
'' Dissipative'Force'Conservative Force
r r
x u
is defined by the Euler Lagrange Process,
as I understand the pure math from Craig Evans
which gives
Equations like PNP
BUT
I leave it to you (all)
to argue/discuss with Craig
about the purity of the process
when two variations are involved
Energetic Variational Approach
EnVarA
64
PNP (Poisson Nernst Planck) for Spheres
Eisenberg, Hyon, and Liu
12
,
14
12
,
14
12 ( ) ( )
= ( )
| |
6 ( ) ( )
( ) ,
| |
n n n nn n
n n n n
B
n p n p
p
a a x yc c
D c z e c y dy
t k T x y
a a x y
c y dy
x y



 
     
 
 


  
 
  

 



r r
r r
r r
r r
r r
r r
Nernst Planck Diffusion Equation
for number density cn of negative n ions; positive ions are analogous
Non-equilibrium variational field theory EnVarA
Coupling Parameters
Ion Radii
=1
or( ) =
N
i i
i
z ec i n p      
 
 
 
 
0ρ
Poisson Equation
Permanent Charge of Protein
Number Densities
Diffusion Coefficient
Dielectric Coefficient
valence
proton charge
Thermal Energy
65
Semiconductor PNP Equations
For Point Charges
      i
i i i
d
J D x A x x
dx

 
Poisson’s Equation
Drift-diffusion & Continuity Equation
 
       0
i i
i
d d
x A x e x e z x
A x dx dx
 
      
  
0idJ
dx

Chemical Potential
   
 
 ex
*
x
x x ln xi
i i iz e kT

  

 
   
  1 2 3
Finite Size
Special ChemistryThermal Energy
Valence
Proton charge
Permanent Charge of Protein
Cross sectional Area
Flux Diffusion Coefficient
Number Densities
( )i x
Dielectric Coefficient
valence
proton charge
Not in Semiconductor
All we have to do is
Solve them!
with Boundary Conditionsdefining
Charge Carriers
ions, holes, quasi-electrons
Geometry
66
Page 67
Solution* of PNP Equation
 
{
     k k
k k
k
D D
CR LJ R L RC L
 

  
   
  
Unidirectional Efflux Unidirectional I
ConditionalDiffusion ChannelSource
ProbabilityVelocity LengthConcentration
Rate Constant
6 4 4 44 7 4 4 4 48
1 4 2 4 31 2 3
1 4 4 2 4 4 3
Prob Prob
nfflux
6 4 4 44 7 4 4 4 48
*MATHEMATICS
This solution was actually DERIVED by computing many conditional probability
measures explicitly by repeated analytical integrations
Eisenberg, Klosek, & Schuss (1995) J. Chem. Phys. 102, 1767-1780
Eisenberg, B. (2000) in Biophysics Textbook On Line "Channels, Receptors, and Transporters"
Eisenberg, B. (2011). Chemical Physics Letters 511: 1-6
Page 68
Please do not be deceived
by the eventual simplicity of Results.
This took >2 years!
Solution
was actually
DERIVED
with explicit formulae
for probability measures
from a
Doubly Conditioned Stochastic Process
involving
Analytical Evaluation
of
Multidimensional Convolution Integrals
Eisenberg, Klosek, & Schuss (1995) J. Chem. Phys. 102, 1767-1780
Eisenberg, B. (2000) in Biophysics Textbook On Line "Channels, Receptors, Transporters"
Eisenberg, B. (2011). Chemical Physics Letters 511: 1-6
All we have to do is
Solve them!
Don’t Despair
Semiconductor
Technology has
Already Done That!
69
Semiconductor Devices
PNP equations describe many robust input output relations
Amplifier
Limiter
Switch
Multiplier
Logarithmic convertor
Exponential convertor
These are SOLUTIONS of PNP for different boundary conditions
with ONE SET of CONSTITUTIVE PARAMETERS
PNP of POINTS is
TRANSFERRABLE
Analytical should be attempted using
techniques of
Weishi Liu University of Kansas
Tai-Chia Lin National Taiwan University & Chun Liu PSU
71
The End
Any Questions?

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Electricity is different august 16 1 2016 with doi

  • 1. Bob Eisenberg Penn State August 2016 Electricity is Different ‘Charge’ is an Abstraction with VERY different Physics in different systems Available as DOI: 10.13140/RG.2.1.2584.8569 at implicit link and at explicit link https://www.researchgate.net/publication/306119626_Electricity_is_Different_August_2016_Penn_State_Mathematics
  • 2.
  • 3. For me (and maybe few others) Cezanne’s Mont Sainte-Victoire* vu des Lauves 3 *one of two at Philadelphia Museum of Art is a
  • 4.
  • 5. See the fraternal twins (i.e., not identical) in the Philadelphia Museum of Art it is worth a visit, and see the Barnes as well
  • 7. Continuity of Current is a Miracle because It is EXACT and UNIVERSAL even though Physics of Current Flow Varies Profoundly Electricity is Different
  • 8. One percent change in density does almost nothing 8 Electricity is Different Density and Concentration Fields are Weak The Electric Field is Strong One percent change in charge lifts the Earth,
  • 9. 9 slight paraphrase of third paragraph, p. 1-1 of Feynman, R. P., R. B. Leighton, and M. Sands. 1963. The Feynman: Lectures on Physics, Mainly Electromagnetism and Matter. New York: Addison-Wesley Publishing Co., also at http://www.feynmanlectures.caltech.edu/II_toc.html. If you were standing at arm’s length from someone and each of you had One percent more electrons than protons, the force would lift the Entire Earth! The Electric Field is Strong Electricity is Different
  • 10.   1 2 0 0 0 0 is electric field, is magnetic field is the current of particles with mass is charge density (of all types) is the permittivity of a vacuum is the permeability of a vacuum velocity o        E B J f light (!) is the operator is the operator     curl divergence 0    E 0 B t      B E { 0 0 0 t         E B J Maxwell Equations are Universal and Exact Displacement Current Everywhere! Inside atoms What is this? NOT exact NOT universal What is this? NOT exact NOT universal Electricity is Different As written by Heaviside, using Gibbs notation
  • 11. Generalized Current is Conserved 0 0 0 t         E B J Displacement Current Everywhere! Inside Atoms Maxwell Equation 0 0; so, 0 t           E B J 1 44 2 4 43 Vector Identity Conservation law Generalized Current EXACT & UNIVERSAL What is this? NOT exact NOT universal
  • 12. 0 0 0 t         E B JMaxwellEquation implies 0 t     E J is conserved EXACTLY and UNIVERSALLY
  • 13. 0 t     E J is conserved EXACTLY and UNIVERSALLY 0 t  E Technical Comment Description of charge  is problematic because it exists in so many forms with such complex properties. Universal representation of  does not exist! Conservation of current does NOT depend on the properties of charge. Conservation of current depends on the existence of J but not on its properties. J exists if magnetism B exists. Displacement Current occurs in vacuum. Atoms and matter are mostly vacuum. Only nuclei of atoms contain mass and they are tiny radius 10-15 m, atom is 10-10 m. Volume of nucleus/volume of atom is about 10-15.
  • 14. Continuity of Current is Exact and Universal no matter what carries the current even though Physics of Charge Flow Varies Profoundly even Creating Plasmas! Maxwell Equations are Special ‘Charge’ is an Abstraction with VERY different Physics in different systems
  • 15. * di E t  When we unplug a computer power supply, we often CREATE SPARKS, i.e., a PLASMA, a NEW KIND of current flow Mathematics of Continuity in Maxwell equations can Create New Kind of Physics, New Kind of Charge
  • 16. Physics of Charge Flow Varies Profoundly but Conservation of Current is EXACT and UNIVERSAL
  • 17. * i E t   ‘Charge’ is an Abstraction with different Physics in different systems but Conservation of Current is EXACT and UNIVERSAL No matter what ‘charge’ carries the current! Discussed in Detail in http://arxiv.org/abs/1502.07251   i D t D = permittivity  E Ag AgClAg AgCl
  • 18. ‘Charge’ is an Abstraction with different Physics in different systems but Conservation of Current is EXACT and UNIVERSAL No matter what ‘charge’ carries the current!
  • 19.
  • 20. Electrodynamics and Ions in Chemistry 20 Applied Electric Field ZERO Applied Electric Field NOT ZERO
  • 21. Law of Mass Action is how chemists have described chemicals, not flows Page 21 f b k k A Bˆ ˆ ˆ†‡ ˆ ˆˆ        ;f b d d A k A B k B dt dt     k is constant [ A] means the activity or approximately the concentration of species A, i.e., the number density of A
  • 22. “ … incomplete truths learned on the way may become ingrained and taken as the whole truth….… what is true and what is only sometimes true will become confused.” Richard Feynman from p.15-61 “The Feynman: Lectures on Physics, Mainly Electromagnetism and Matter. Vol. 2” 1963, New York: Addison- Wesley Publishing Co., also at available on line
  • 23. Page 23 [X] means the concentration, really activity of species Z, i.e., concentration is the number density xy yx zy kk yz k k X Y Z           net xy xy yx xy yx xy x xy y yx J J J k X k Y I z Fk X z Fk Y       Law of Mass Action is about Conservation of Mass and Matter It is not about conservation of charge
  • 24. Page 24 [X] means the concentration, really activity of species Z, i.e., concentration is the number density xy yx zy kk yz k k X Y Z       0xy x xy y yx I z Fk X z Fk Y   0xy I 
  • 25. 25 17 10 under all conditions AB DEI I    Kirchoff Current Law requires ALWAYS , or so Kirchoff Current Law and Maxwell Equations are nearly the same thing Bhat & Osting (2011). IEEE Trans Antennas and Propagation 59: 3772-3778 Heras (2007) American Journal of Physics 75: 652-657 Heras (2011) American Journal of Physics 79: 409 Itzykson & Zuber Quantum Field Theory (1990) p. 10
  • 26. 26 ‘Current-in’ does not automatically equal ‘Current-out’ in Rate Models if rate constants are independent and Currents are Uncorrelated AB DE AB BC CD DE I I k k k k A B C D E but Kirchoff Current Law ˆ ˆ ˆ† ˆ ˆ ˆ† ˆ ˆ ˆ† ˆ ˆ ˆ †‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ ‡ ˆ ˆ ˆ requires DEABI = I AB DEI I
  • 27. Page 27 Correlation between currents is in fact ALWAYS 0.999 999 999 999 999 999 because Continuity of Current is Exact Kirchoff Continuity of Current Law including displacement current is another form of Maxwell’s Equations Heras, J.A.: Am J Phys 75: 652 (2007); Eur J Phys 30: 845 (2009); Am J Ph79: 409 (2011) Electricity is Different
  • 29. Page 29 Chemistry is about Chemicals not signals How can this be?
  • 30. Page 30 Maxwell’s Equations Kirchoff’s Current Law compute Signals from Conservation of Charge and Continuity of Current, including displacement current
  • 31. 31 Parameterization is not Possible under more than one condition Rate constants chosen at one boundary charge or one potential cannot work for different charges or potentials Currents in Rate Models are Independent of Charge and Potential but in the real world Currents depend on Charge and Potential
  • 32. Cause of Frustration Biochemical Models are Rarely TRANSFERRABLE Do Not Fit Data even approximately in more than one solution* Editors: Charlie Brenner, Angela Hopp American Society for Biochemistry and Molecular Biology *i.e., in more than one concentration or type of salt, like Na+Cl− or K+Cl − Note: Biology occurs in different solutions from those used in most measurements Title chosen by Editor Charlie Brenner 32 ASBMB Today (2014) 13:36-38 extended in http://arxiv.org/abs/1409.0243
  • 33.
  • 34. Physical Chemists are Frustrated by Real Solutions
  • 35. 35 All of Biology occurs in Salt Solutions of definite composition and concentration and that matters! Salt Water is the Liquid of Life Pure H2O is toxic to cells and molecules! Salt Water is a Complex Fluid Main Ions are Hard Spheres, close enough Sodium Na+ Potassium K+ Calcium Ca2+ Chloride Cl - 3 Å K+Na+ Ca++ Cl -
  • 36. “Sometimes it is necessary to put a veil on the past, For the Sake of the Future” Henry Clay, the Essential American p. 375 D.S. & J.T. Heidler History of Derivations of Law of Mass Action
  • 37. 37 Learned from Doug Henderson, J.-P. Hansen, Stuart Rice, among others…Thanks! Ions in a solution are a Highly Compressible Plasma Central Result of Physical Chemistry although the Solution is Incompressible Free energy of an ionic solution is mostly determined by the Number density of the ions. Density varies from 10-11 to 101M in typical biological system of proteins, nucleic acids, and channels.
  • 38. Electrolytes are Complex Fluids 38 Treating a Complex Fluid as if it were a Simple Fluid will produce Elusive Results
  • 39. 39 It is not surprising that Inconsistent Treatments of ionic solutions have been so Unsuccessful despite more than a century of work by fine scientists and mathematicians “It is still a fact that over the last decades, it was easier to fly to the moon than to describe the free energy of even the simplest salt solutions beyond a concentration of 0.1M or so.” Kunz, W. "Specific Ion Effects" World Scientific Singapore, 2009; p 11. Werner Kunz:
  • 40. “It is still a fact that over the last decades, it was easier to fly to the moon than to describe the free energy of even the simplest salt solutions beyond a concentration of 0.1M or so.” Kunz, W. "Specific Ion Effects" World Scientific Singapore, 2009; p 11. Werner Kunz
  • 41. The classical text of Robinson and Stokes (not otherwise noted for its emotional content) gives a glimpse of these feelings when it says “In regard to concentrated solutions, many workers adopt a counsel of despair, confining their interest to concentrations below about 0.02 M, ... ” p. 302 Electrolyte Solutions (1959) Butterworths , also Dover (2002)
  • 43. 43 It is difficult to even define in a unique way Properties of One Ion when Tremendous Opportunity for Applied Mathematics Everything Interacts with Everything
  • 44. Electrolytes are Complex Fluids 44 After 690 pages and 2604 references, properties of SINGLE Ions are Elusive* because Every Ion Interacts with Everything *’elusive’ is in the authors’ choice in the title but emphasis is added Hünenberger & Reif (2011) “Single-Ion Solvation … Approaches to Elusive* Thermodynamic Quantities”
  • 45. 45 Everything Interacts with Everything Ions in Water are the Liquid of Life They are not ideal solutions For Modelers and Mathematicians Tremendous Opportunity for Applied Mathematics because ‘law’ of mass action assumes nothing interacts Chun Liu’s Energetic Variational Principle EnVarA
  • 46. 1. >139,175 Data Points [Sept 2011] on-line IVC-SEP Tech Univ of Denmark http://www.cere.dtu.dk/Expertise/Data_Bank.aspx 2. Kontogeorgis, G. and G. Folas, 2009: Models for Electrolyte Systems. Thermodynamic John Wiley & Sons, Ltd. 461-523. 3. Zemaitis, J.F., Jr., D.M. Clark, M. Rafal, and N.C. Scrivner, 1986, Handbook of Aqueous Electrolyte Thermodynamics. American Institute of Chemical Engineers 4. Pytkowicz, R.M., 1979, Activity Coefficients in Electrolyte Solutions. Vol. 1. Boca Raton FL USA: CRC. 288. Good Data Compilations of Specific Ion Effect
  • 47. 47 Mathematics of Chemistry must deal Naturally with Interactions Everything Interacts ‘Law of Mass Action’ assumes nothing interacts So this is a great opportunity for new mathematics and applications!
  • 48. Page 48 ‘Law’ of Mass Action including Interactions From Bob Eisenberg p. 1-6, in this issue Variational Approach EnVarA 1 2- 0E      6 7 8 6 7 8r r r x u Conservative Dissipative Mathematics of Interactions in Complex Fluids
  • 49. 49 Shielding is a defining property of Complex Fluids It is VERY hard to Simulate at Equilibrium and (in my opinion) IMPOSSIBLE to Simulate in nonequilibrium Like Batteries or Nerve Fibers because flows involve Far Field (macroscopic) boundaries
  • 50. 50 Shielding Dominates Electric Properties of Channels, Proteins, as it does Ionic Solutions Shielding is ignored in traditional treatments of Ion Channels and of Active Sites of proteins Rate Constants Depend on Shielding and so Rate Constants Depend on Concentration and Charge Main Qualitative Result
  • 51. 51 Main Qualitative Result Shielding in Gramicidin Hollerbach & Eisenberg
  • 53. “ … incomplete truths learned on the way may become ingrained and taken as the whole truth….… what is true and what is only sometimes true will become confused.” Richard Feynman from p.15-61 “The Feynman: Lectures on Physics, Mainly Electromagnetism and Matter. Vol. 2” 1963, New York: Addison- Wesley Publishing Co., also at available on line
  • 54. “Sometimes it is necessary to put a veil on the past, For the Sake of the Future” Henry Clay, the Essential American p. 375 D.S. & J.T. Heidler History of Derivations of Law of Mass Action
  • 55. “Journey of a thousand miles starts with a single step” in the right direction, I beg to add to this Chinese saying
  • 56. As a Chicago Surgeon put it You better head in the right direction, if you want to get anywhere
  • 57. That direction needs to include the Electric Field calculated and calibrated, global and local, if the journey is ever to end, in my view.
  • 58. 58 Replacement of “Law of Mass Action” is Feasible for Ionic Solutions using the All Spheres (primitive = implicit solvent model of ionic solutions) and Theory of Complex Fluids
  • 59. ‘Law’ of Mass Action including Interactions From Bob Eisenberg p. 1-6, in this issue Variational Approach EnVarA 1 2- 0E      6 7 8 6 7 8 r r x u Conservative Dissipative
  • 60. 60 Energetic Variational Approach allows accurate computation of Flow and Interactions in Complex Fluids like Liquid Crystals Engineering needs Calibrated Theories and Simulations Engineering Devices almost always use flow Classical theories and Molecular Dynamics have difficulties with flow, interactions, and complex fluids
  • 61. 61 Energetic Variational Approach EnVarA Chun Liu, Rolf Ryham, and Yunkyong Hyon Mathematicians and Modelers: two different ‘partial’ variations written in one framework, using a ‘pullback’ of the action integral } } 1 2 0 E       '' Dissipative'Force'Conservative Force r r x u Action Integral, after pullback Rayleigh Dissipation Function Field Theory of Ionic Solutions: Liu, Ryham, Hyon, Eisenberg Allows boundary conditions and flow Deals Consistently with Interactions of Components Composite Variational Principle Euler Lagrange Equations Shorthand for Euler Lagrange process with respect to r x Shorthand for Euler Lagrange process with respect to r u
  • 62. 2 , = , = , i i i B i i j j B i i n p j n p D c c k T z e c d y dx k T c                    = Dissipative r r% 1 4 4 4 4 4 4 4 4 4 2 4 4 4 4 4 4 4 4 4 3 , = = , , 0 , , = 1 log 2 2 i B i i i i i j j i n p i n p i j n p c k T c c z ec c d y dx d dt                        Conservative r r% 6 4 4 4 4 4 4 4 4 4 4 44 7 4 4 4 4 4 4 4 4 4 4 4 48 Hard Sphere Terms Permanent Charge of proteintime ci number density; thermal energy; Di diffusion coefficient; n negative; p positive; zi valence; ε dielectric constantBk T Number Density Thermal Energy valence proton charge Dissipation Principle Conservative Energy dissipates into Friction = , 0 2 1 22 i i i n p z ec              Note that with suitable boundary conditions 62
  • 63. 63 } } 1 2 0 E       '' Dissipative'Force'Conservative Force r r x u is defined by the Euler Lagrange Process, as I understand the pure math from Craig Evans which gives Equations like PNP BUT I leave it to you (all) to argue/discuss with Craig about the purity of the process when two variations are involved Energetic Variational Approach EnVarA
  • 64. 64 PNP (Poisson Nernst Planck) for Spheres Eisenberg, Hyon, and Liu 12 , 14 12 , 14 12 ( ) ( ) = ( ) | | 6 ( ) ( ) ( ) , | | n n n nn n n n n n B n p n p p a a x yc c D c z e c y dy t k T x y a a x y c y dy x y                                r r r r r r r r r r r r Nernst Planck Diffusion Equation for number density cn of negative n ions; positive ions are analogous Non-equilibrium variational field theory EnVarA Coupling Parameters Ion Radii =1 or( ) = N i i i z ec i n p               0ρ Poisson Equation Permanent Charge of Protein Number Densities Diffusion Coefficient Dielectric Coefficient valence proton charge Thermal Energy
  • 65. 65 Semiconductor PNP Equations For Point Charges       i i i i d J D x A x x dx    Poisson’s Equation Drift-diffusion & Continuity Equation          0 i i i d d x A x e x e z x A x dx dx             0idJ dx  Chemical Potential        ex * x x x ln xi i i iz e kT              1 2 3 Finite Size Special ChemistryThermal Energy Valence Proton charge Permanent Charge of Protein Cross sectional Area Flux Diffusion Coefficient Number Densities ( )i x Dielectric Coefficient valence proton charge Not in Semiconductor
  • 66. All we have to do is Solve them! with Boundary Conditionsdefining Charge Carriers ions, holes, quasi-electrons Geometry 66
  • 67. Page 67 Solution* of PNP Equation   {      k k k k k D D CR LJ R L RC L              Unidirectional Efflux Unidirectional I ConditionalDiffusion ChannelSource ProbabilityVelocity LengthConcentration Rate Constant 6 4 4 44 7 4 4 4 48 1 4 2 4 31 2 3 1 4 4 2 4 4 3 Prob Prob nfflux 6 4 4 44 7 4 4 4 48 *MATHEMATICS This solution was actually DERIVED by computing many conditional probability measures explicitly by repeated analytical integrations Eisenberg, Klosek, & Schuss (1995) J. Chem. Phys. 102, 1767-1780 Eisenberg, B. (2000) in Biophysics Textbook On Line "Channels, Receptors, and Transporters" Eisenberg, B. (2011). Chemical Physics Letters 511: 1-6
  • 68. Page 68 Please do not be deceived by the eventual simplicity of Results. This took >2 years! Solution was actually DERIVED with explicit formulae for probability measures from a Doubly Conditioned Stochastic Process involving Analytical Evaluation of Multidimensional Convolution Integrals Eisenberg, Klosek, & Schuss (1995) J. Chem. Phys. 102, 1767-1780 Eisenberg, B. (2000) in Biophysics Textbook On Line "Channels, Receptors, Transporters" Eisenberg, B. (2011). Chemical Physics Letters 511: 1-6
  • 69. All we have to do is Solve them! Don’t Despair Semiconductor Technology has Already Done That! 69
  • 70. Semiconductor Devices PNP equations describe many robust input output relations Amplifier Limiter Switch Multiplier Logarithmic convertor Exponential convertor These are SOLUTIONS of PNP for different boundary conditions with ONE SET of CONSTITUTIVE PARAMETERS PNP of POINTS is TRANSFERRABLE Analytical should be attempted using techniques of Weishi Liu University of Kansas Tai-Chia Lin National Taiwan University & Chun Liu PSU