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![parseArgs <- function() {
argv <- commandArgs(trailingOnly = TRUE)
argv <- strsplit(argv, "=")
argv <- sapply(argv, function(arg) {
ret <- ifelse(is.na(arg[2]), 1, arg[2])
names(ret) <- arg[1]
return(ret)
})
# show usage
# Not use 'existsFunction' because loading 'methods' package
takes about 60% of the startup time
if ("help" %in% names(argv)) {
tryCatch(usage(), error = function(e) cat("No usage for
this scriptn"))
quit()
}
# check arguments
# Not use 'existsFunction' because loading 'methods' package
takes about 60% of the startup time
try(checkArgs(argv), silent = TRUE)
return(argv)
}](https://image.slidesharecdn.com/getoptlong-111112012854-phpapp01/75/R-Getopt-Long-14-2048.jpg)
![getopt_long_sample.R
source("GetoptLong.R")
GetOptions('save.path=s' = save.path)
print(save.path)
$ RScript getopt_long_sample.R --save.path=hoge
[1] "hoge"](https://image.slidesharecdn.com/getoptlong-111112012854-phpapp01/75/R-Getopt-Long-32-2048.jpg)
![R
getopt_long_sample.R
source("GetoptLong.R")
GetOptions('save.path=s' = save.path)
print(save.path) save.path
# parent.frame
var.names <- as.character(match.call()[-1])
assign(var, ret[[var]], envir = parent.frame())](https://image.slidesharecdn.com/getoptlong-111112012854-phpapp01/75/R-Getopt-Long-38-2048.jpg)
![R
getopt_long_sample.R
source("GetoptLong.R")
GetOptions('save.path=s' = save.path)
print(save.path) save.path
# parent.frame
var.names <- as.character(match.call()[-1])
assign(var, ret[[var]], envir = parent.frame())
http://user.ecc.u-tokyo.ac.jp/~s105503/p02.html](https://image.slidesharecdn.com/getoptlong-111112012854-phpapp01/75/R-Getopt-Long-39-2048.jpg)
Uploaded byTakeshi Arabiki
R版Getopt::Longを作ってみた
The document discusses the Getopt::Long module for parsing command line arguments in R. It provides an example of using Getopt::Long to parse arguments in an R script called getopt_long_sample.R, where the --save.path argument is parsed and assigned to the save.path variable. Getopt::Long allows defining argument types like strings, integers, and flags to parse command line options consistently in both Perl and R scripts.
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R版Getopt::Longを作ってみた
- 1. R Getopt::Long Tsukuba.R #9 (2011/11/12) @a_bicky
- 14. parseArgs <- function(){ argv <- commandArgs(trailingOnly = TRUE) argv <- strsplit(argv, "=") argv <- sapply(argv, function(arg) { ret <- ifelse(is.na(arg[2]), 1, arg[2]) names(ret) <- arg[1] return(ret) }) # show usage # Not use 'existsFunction' because loading 'methods' package takes about 60% of the startup time if ("help" %in% names(argv)) { tryCatch(usage(), error = function(e) cat("No usage for this scriptn")) quit() } # check arguments # Not use 'existsFunction' because loading 'methods' package takes about 60% of the startup time try(checkArgs(argv), silent = TRUE) return(argv) }
- 15.
- 18.
- 19. Perl parser use Getopt::Long; my $data = "file.dat"; my $length = 24; my $verbose; $result = GetOptions ("length=i" => $length, # numeric "file=s" => $data, # string "verbose" => $verbose); # flag http://search.cpan.org/~jv/Getopt-Long-2.38/lib/Getopt/Long.pm getopt_long_sample.pl use Getopt::Long; GetOptions('save_path=s' => $save_path); print "$save_pathn"; $ perl getopt_long_sample.pl --save_path=hoge hoge
- 21.
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- 28. getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) GetOptions('var1=s' = var1, # 'var2=i' = var2, # 'var3=f' = var3, # 'var4' = var4, # 'var5=s@' = var5, # 'var6=i%' = var6 # )
- 29. getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) useGetopt::Long; GetOptions('save_path=s' => $save_path); print "$save_pathn";
- 30. getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) useGetopt::Long; GetOptions('save_path=s' => $save_path); print "$save_pathn";
- 32. getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) $RScript getopt_long_sample.R --save.path=hoge [1] "hoge"
- 35.
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- 38. R getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) save.path # parent.frame var.names <- as.character(match.call()[-1]) assign(var, ret[[var]], envir = parent.frame())
- 39. R getopt_long_sample.R source("GetoptLong.R") GetOptions('save.path=s' = save.path) print(save.path) save.path # parent.frame var.names <- as.character(match.call()[-1]) assign(var, ret[[var]], envir = parent.frame()) http://user.ecc.u-tokyo.ac.jp/~s105503/p02.html