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Classifying Vegetation in
Nebraska using Landsat
data
Mentor: Maggie Johnson
Group member: Samuel Hood, Riya Prabbhudesai, Thomas Rechtman,
Zhihan Lu, Meghana Tatineni, Ganlin Ye
Introduction
Land cover: the surface of the ground (i.e, types of vegetation and water)
Knowledge of Land cover is important because:
● Vegetation affects climate and climate affects vegetation
● Landcover can be an important input into various models (ex.climate change,
air pollution)
● Being able to identify changes in land cover helps us understand changes in
agriculture practices and implications of deforestation and how bodies of
water change over time.
Data Available
Enhanced Vegetation Index: A measurement of how much chlorophyll is present
*Formula of EVI* -> Uses Reflectance Values
Other Data available:
● Dates Corresponding to when the EVI value was calculated
● Land cover type of each location
● Temperature over the region for each day
● X,Y coordinates of each location
● Longitude, Latitude coordinates of each location
Goal
To determine whether remote sensing data can be used to classify the land cover of a region in Nebraska
at high spatial resolution
We’ll accomplish this goal by training our models using the USDA NASS 2008 cropland data layer
From time series to features
Feature Selection Plots
Feature Selection Plots
Location (Longitude*Latitude)
Feature Selection Plots
Minimum EVI
Introduction to Features
Feature Ideas
Latitude Blue average reflectance Red average reflectance
Longitude Green average reflectance Temperature at max EVI
Duration of the season Nir Average reflectance Temperature at min EVI
Maximum EVI Max-Min blue reflectance Rate of spring green-up
Time of maximum EVI Max-Min green reflectance Starting date of the season
Max-Min EVI Max-Min NIR reflectance Starting EVI of the season
Logistic Regression
Background
- Generalized linear model with bernoulli random component and logit link function
- Binary outcome
- Formula
- Advantages: Simple
- Disadvantages: Binary Outcome
Model Outcome
- Two outcomes: open water and vegetation
- One covariate used: Average Green Reflectance values
- Error rate of .82%
Multinomial Regression
- Extension of logistic regression
- Outcomes can be more than two categories
- Forward and backward selection used to select features.
- Advantages: Simple
- Disadvantages: Linear Prediction, Overfitting
- 13 out of the 19 features are used in the model
Random Forest (will need more slides)
Machine Learning Algorithm that uses decision trees
Since one decision tree would over fit our data, an average of many random trees
is taken
The processes to random forest is similar to tree bagging (insert equation)
Random Forest differs in the fact that it choses a new random subtree at every
vertex
In our models we looked at classifying through a random forest as well as
concatenating random forest through in steps by grouping our different
classifications.
Cross Validation
- Separate the data into n
non-overlapping sets of
equal size.
- Train on n-1 of these sets
and test on the other 1
set.
- Average all the accuracy
values for final
assessment of the model
- Benefit:
Reduce bias in training
and testing
Method
Error Rates on
randomized test data
Mean error rate in 10-fold
cross validation
Multinomial Logistic
Regression
32.48% 33.38%
Random Forests 16.94% 15.62%
Multi-Layer Random
Forest
16.71% 15.81%
Model Comparison
Confusion Matrices
Multi-Layer Random
Forest
Traditional Random
Forest
Conclusions
Random forest is the best model for classifying landcover.
Future Work
There is missing data in the landsat data and it is collected every 16 days.
Missing data can be filled in with motis data but the motis data has low spatial
resolution.
Possible abrupt changes in EVI and temperature are not recorded in landsat data.
Undergraduate Modeling Workshop -  Vegetation Working Group Final Presentation, May 25, 2018

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Undergraduate Modeling Workshop - Vegetation Working Group Final Presentation, May 25, 2018

  • 1. Classifying Vegetation in Nebraska using Landsat data Mentor: Maggie Johnson Group member: Samuel Hood, Riya Prabbhudesai, Thomas Rechtman, Zhihan Lu, Meghana Tatineni, Ganlin Ye
  • 2. Introduction Land cover: the surface of the ground (i.e, types of vegetation and water) Knowledge of Land cover is important because: ● Vegetation affects climate and climate affects vegetation ● Landcover can be an important input into various models (ex.climate change, air pollution) ● Being able to identify changes in land cover helps us understand changes in agriculture practices and implications of deforestation and how bodies of water change over time.
  • 3. Data Available Enhanced Vegetation Index: A measurement of how much chlorophyll is present *Formula of EVI* -> Uses Reflectance Values Other Data available: ● Dates Corresponding to when the EVI value was calculated ● Land cover type of each location ● Temperature over the region for each day ● X,Y coordinates of each location ● Longitude, Latitude coordinates of each location
  • 4. Goal To determine whether remote sensing data can be used to classify the land cover of a region in Nebraska at high spatial resolution We’ll accomplish this goal by training our models using the USDA NASS 2008 cropland data layer
  • 5.
  • 6. From time series to features
  • 8. Feature Selection Plots Location (Longitude*Latitude)
  • 10. Introduction to Features Feature Ideas Latitude Blue average reflectance Red average reflectance Longitude Green average reflectance Temperature at max EVI Duration of the season Nir Average reflectance Temperature at min EVI Maximum EVI Max-Min blue reflectance Rate of spring green-up Time of maximum EVI Max-Min green reflectance Starting date of the season Max-Min EVI Max-Min NIR reflectance Starting EVI of the season
  • 11. Logistic Regression Background - Generalized linear model with bernoulli random component and logit link function - Binary outcome - Formula - Advantages: Simple - Disadvantages: Binary Outcome Model Outcome - Two outcomes: open water and vegetation - One covariate used: Average Green Reflectance values - Error rate of .82%
  • 12.
  • 13. Multinomial Regression - Extension of logistic regression - Outcomes can be more than two categories - Forward and backward selection used to select features. - Advantages: Simple - Disadvantages: Linear Prediction, Overfitting - 13 out of the 19 features are used in the model
  • 14. Random Forest (will need more slides) Machine Learning Algorithm that uses decision trees Since one decision tree would over fit our data, an average of many random trees is taken The processes to random forest is similar to tree bagging (insert equation) Random Forest differs in the fact that it choses a new random subtree at every vertex In our models we looked at classifying through a random forest as well as concatenating random forest through in steps by grouping our different classifications.
  • 15. Cross Validation - Separate the data into n non-overlapping sets of equal size. - Train on n-1 of these sets and test on the other 1 set. - Average all the accuracy values for final assessment of the model - Benefit: Reduce bias in training and testing
  • 16. Method Error Rates on randomized test data Mean error rate in 10-fold cross validation Multinomial Logistic Regression 32.48% 33.38% Random Forests 16.94% 15.62% Multi-Layer Random Forest 16.71% 15.81% Model Comparison
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  • 19.
  • 20. Conclusions Random forest is the best model for classifying landcover.
  • 21. Future Work There is missing data in the landsat data and it is collected every 16 days. Missing data can be filled in with motis data but the motis data has low spatial resolution. Possible abrupt changes in EVI and temperature are not recorded in landsat data.

Editor's Notes

  1. Ultimately have a global landcover so categrfdd this by using remote sensing data Landsat and time series example corn and something else How remote sensing works
  2. 1 km of data- google map image of region Add landsat data
  3. qplot(ylim=c(0,1))
  4. Building the model
  5. (the percentage of each model, to conclude xxxx might be the best.) We did 99% in Binomial logistic regression on water aspect.