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Revista Mexicana de Ingeniería Química 
CONTENIDO 
Volumen 8, número 3, 2009 / Volume 8, number 3, 2009 
213 Derivation and application of the Stefan-Maxwell equations 
(Desarrollo y aplicación de las ecuaciones de Stefan-Maxwell) 
Stephen Whitaker 
Biotecnología / Biotechnology 
245 Modelado de la biodegradación en biorreactores de lodos de hidrocarburos totales del petróleo 
intemperizados en suelos y sedimentos 
(Biodegradation modeling of sludge bioreactors of total petroleum hydrocarbons weathering in soil 
and sediments) 
S.A. Medina-Moreno, S. Huerta-Ochoa, C.A. Lucho-Constantino, L. Aguilera-Vázquez, A. Jiménez- 
González y M. Gutiérrez-Rojas 
259 Crecimiento, sobrevivencia y adaptación de Bifidobacterium infantis a condiciones ácidas 
(Growth, survival and adaptation of Bifidobacterium infantis to acidic conditions) 
L. Mayorga-Reyes, P. Bustamante-Camilo, A. Gutiérrez-Nava, E. Barranco-Florido y A. Azaola- 
Espinosa 
265 Statistical approach to optimization of ethanol fermentation by Saccharomyces cerevisiae in the 
presence of Valfor® zeolite NaA 
(Optimización estadística de la fermentación etanólica de Saccharomyces cerevisiae en presencia de 
zeolita Valfor® zeolite NaA) 
G. Inei-Shizukawa, H. A. Velasco-Bedrán, G. F. Gutiérrez-López and H. Hernández-Sánchez 
Ingeniería de procesos / Process engineering 
271 Localización de una planta industrial: Revisión crítica y adecuación de los criterios empleados en 
esta decisión 
(Plant site selection: Critical review and adequation criteria used in this decision) 
J.R. Medina, R.L. Romero y G.A. Pérez 
Revista Mexicana 
de Ingenier´ıa Qu´ımica 
Academia Mexicana de Investigaci´on y Docencia en Ingenier´ıa Qu´ımica, A.C. 
1 
Volumen 13, N´umero 1, Abril 2013 
ISSN 1665-2738 
1 
Vol. 13, No. 1 (2014) 9-18 
NANOBIOTECHNOLOGY FOR MEDICAL DIAGNOSTICS 
NANOBIOTECNOLOGI´A PARA EL DIAGNO´ STICO ME´DICO 
K. Kourentzi1 and R. C. Willson1;2;3;4 
1Department of Chemical  Biomolecular Engineering, University of Houston, Houston, TX 77204, USA. 
2Department of Biology  Biochemistry, University of Houston, Houston, TX 77004, USA 
3Houston Methodist Research Institute, Houston, TX, 77030, USA 
4Centro de Biotecnolog´ıa FEMSA, Departamento de Biotecnolog´ıa e Ingenier´ıa de Alimentos, Tecnol´ogico de 
Monterrey, Monterrey, NL 64849, Mexico 
Received June 14, 2013; Accepted December 31, 2013 
Abstract 
Traditional core areas of chemical engineering education are being extended by new expertise in science and engineering at the 
molecular and nanometer scale. Chemical engineers have been pursuing a dynamic role in the design and development of new 
generations of diagnostic platforms exploiting dierent nanomaterials and “are the forefront of this rapidly developing field, with 
the potential to propel discoveries from the bench to bedside” (Ruan et al., 2012). 
Nanobiotechnology leverages existing expertise from engineering and biology, promotes interdisciplinary discoveries and 
addresses key elements of next-generation clinical applications. 
In the present review we attempt to give an overview of the latest technologies that in our opinion hold great promise as the 
basis of powerful biodiagnostic tools. 
Keywords: bioassays, ELISA, Immuno-PCR, phage, nanofabrication. 
Resumen 
La ´areas tradicionales de la educaci´on en ingenier´ıa qu´ımica est´an siendo extendidas por nuevas experiencias en ciencia e 
ingenier´ıa a escalas molecular y nanom´etrica. Los ingenieros qu´ımicos has estado persiguiendo jugar un rol din´amico en el 
dise˜no y desarrollo de nuevas generaciones de plataformas de diagn´ostico explotando diferentes nanomateriales y “son el frente 
de este campo que se encuentra r´apidamente en desarrollo, con el potencial de impulsar descubrimientos que vayan desde el 
laboratorio hasta el tratamiento de pacientes.” (Ruan et al., 2012). 
La nanobiotecnolog´ıa sirve como palanca en la experiencia que se tiene en ingenier´ıa y biolog´ıa, promueve descubrimientos 
interdisciplinarios y atiende elementos clave de la siguiente generaci´on de aplicaciones cl´ınicas. 
En la presente revisi´on tratamos de proporcionar un visi´on general de las ´ultimas tecnolog´ıas que en nuestra opini´on 
constituyen una gran promesa como base para herramientas poderosas de diagn´ostico. 
Palabras clave: bioensayos, ELISA, Inmuno-PCR, fago, nanofabricaci´on. 
1 The state of the art-ELISA and 
PCR 
We begin with a brief discussion of the two most 
widely-used technologies, which are being advanced 
by the integration of nanoscale elements and to which 
new approaches are inevitably compared. For 40 years, 
the gold standard for detecting protein molecules 
has been ELISA (enzyme -linked immunosorbent 
assay) in which a surface-captured analyte is detected 
by binding an antibody conjugated to a signal-generating 
enzyme reporter. Enzymes can generate 
absorbance, fluorescence, chemiluminescence or 
luminescence from appropriate substrates, and each of 
these is commonly used with proper instrumentation. 
Technical innovations such as miniaturization, 
integration with microfluidics (e.g. GyroLab) and au- 
Corresponding author. E-mail: willson@uh.edu 
+1-713-743-4308 
Publicado por la Academia Mexicana de Investigaci´on y Docencia en Ingenier´ıa Qu´ımica A.C. 9
Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 
Figure 1. 
Detection of protein biomolecules; adapted with permission (Giljohann {it et al}., 
Manuscrito sometido a la Revista Mexicana de Ingeniería Química 12 
2009). 
Fig. 1. Detection of protein biomolecules; adapted 
with permission (Giljohann et al., 2009). 
tomation, along with engineered reporters that carry 
multiple enzymes (e.g. 10 nm gold nanoparticles (Jia 
et al., 2009)) and development of sensitive substrates 
have taken the classic assay to a new level, but 
sensitivity (Figure 1) and narrow linear dynamic range 
remain still an issue. 
Using PCR, detection of nucleic acids achieves 
remarkable sensitivity, down to a few molecules, by 
exploiting the natural mechanisms of DNA replication 
during cell division. PCR, or “polymerase chain 
reaction”, the Nobel-recognized 1983 discovery of Dr. 
Kary Mullis, is used to amplify a specific region of a 
given DNA molecule bounded by two complementary 
DNA primers using a heat-stable DNA-copying 
polymerase. Heating denatures the double-stranded 
target into two single strands, each of which is 
made double-stranded by polymerase extension of the 
complementary primer, so that the target sequence 
is doubled in concentration. The reaction is repeated 
multiple times and leads to exponential amplification 
of the DNA fragment. After tens of cycles, million-fold 
amplification of the DNA target region makes 
detection relatively easy, but at the cost of time and 
complex temperature-cycling PCR apparatus. 
Note that most of the emerging nano-bio- 
diagnostic methods depend upon molecular 
recognition, in which a molecule such as an antibody 
or DNA probe, binds or hybridizes to its target. 
Biochemistry and physiology depend on molecular 
recognition in every aspect of their functioning, and 
the “nano” side of a bio-nano collaboration often is 
most impressed by the ability of the “bio” side to 
obtain specific, high-anity recognition tools, which 
bind the analyte of interest. The essential following 
element of a complete diagnostic is the transduction 
of this recognition and binding into a human-readable 
output signal, and it is in this transduction step 
that nanostructured elements usually make their 
contribution. This review is organized according to 
signal transduction methods used for detection. 
2 Optical readout 
Metal nanoparticles (typically gold and silver particles 
with diameters ranging from 10-150 nm) support 
surface plasmons (oscillations of the electrons at 
the nanoparticle surface) that result in extraordinary 
optical properties that are not exhibited by any other 
class of material (Saha et al., 2012; Weintraub, 2013). 
By changing their size, shape, and surface coating, 
the colors of nanoparticles can be tuned across the 
visible and near-infrared region of the electromagnetic 
spectrum. Solutions of spherical gold nanoparticles 
are ruby red in color due to the strong scattering 
and absorption in the green region of the spectrum. 
Solutions of silver nanoparticles are yellow due to the 
plasmon resonance in the blue region of the spectrum 
(red and green light are unaected). 
Sensors utilizing plasmonic nanoparticles allow 
for a rather simple detection, even by optical means. 
Mirkin and co-workers were the first to utilize metal 
nanoparticles for the plasmonic-based detection of 
nucleic acids (Mirkin et al., 1996; Elghanian et 
al., 1997). The analyte molecules cause the bridging 
of DNA-functionalized metal nanoparticles (gold or 
silver) generating aggregates with a concomitant 
change of solution color from red to blue as a 
consequence of interacting particle surface plasmons 
and aggregate scattering properties. More recently, de 
Rica and Stevens reported a plasmonic ELISA (de 
la Rica et al., 2012) for the ultrasensitive detection 
of proteins with the naked eye. Their significant 
observation was that nanoparticles can be generated by 
the reduction of gold ions in the presence of hydrogen 
peroxide. However, the concentration of hydrogen 
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Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 
peroxide directly aects the reaction and in the 
presence of high concentration of hydrogen peroxide, 
a red colored solution of non-aggregated, spherical 
gold particles is formed. Then they adapted this 
process as a signal generation mechanism for ELISA 
by utilizing the very-active catalase enzyme that when 
bound by the analyte decreases the concentration 
of hydrogen peroxide and favors the generation of 
blue-colored aggregates of nanoparticles. The authors 
demonstrated the detection of HIV-1 capsid antigen 
p24 at ag/ml level in serum by visual scoring and 
thus they opened the road for the adoption of classical 
ELISA in settings, e.g., in developing countries, that 
lack sophisticated laboratory instrumentation. 
Another approach pioneered by Halas, West, 
and co-workers is based on the rational design of 
nanoshells (core-shell spherical particles consisting 
of a dielectric core with a thin, metallic shell) 
that attenuate light strongly in the near-infrared 
region where blood does not. Using nanoshells, 
they were able to demonstrate an immunoassay 
performed in whole blood without the need for 
purification/separation steps (Hirsch et al., 2005). 
Ultimate sensitivity is at the level of single 
molecules. Counting single molecules comes with 
practical challenges but oers distinct advantages over 
ensemble measurements (Walt 2013). Building on 
their fiber optic microarray technology, Walt group at 
Tufts have developed a single-molecule digital ELISA 
(Rissin et al., 2010) where single immunocomplexes 
captured on beads are detected in arrays of femtoliter 
size wells using fluorescence imaging. They reported 
the detection of PSA in serum in femtomolar level 
using the same reagents as in a classic ELISA. The 
technology (Single Molecule Array, SiMoA) has been 
commercialized and a pilot study to quantitatively 
measure biomarkers of inflammation from patients 
with Crohn’s disease has been reported (Song et al., 
2011). 
Quantum dots (Q dots), semiconductor 
nanocrystals (2-8 nm), exhibit size-dependent optical 
and electrical properties (Alivisatos 1996) and show 
great promise as multiplexable fluorescent reporters in 
diagnostic assays (reviewed in (Samir et al., 2012)). 
3 Immuno-PCR 
The combination of antibody-like protein molecular 
recognition with PCR’s enormous DNA amplification 
sensitivity is an intuitively attractive concept which 
has been visited repeatedly since Sano et al. 
(1992) coined the term Immuno-PCR in 1992. 
In Immuno-PCR, a chimeric molecule is used 
consisting of an antibody (which recognizes the 
target) linked to a sensitively-detectable amplifiable 
DNA. Immuno-PCR generally achieves a 100-10,000- 
fold improvement in the detection limit compared to 
standard ELISAs, but has still failed ubiquitously to 
establish itself in the analytical laboratory, mainly 
due to the complicated preparation of immuno- 
PCR reagents, non-specific binding, and lack of 
reproducibility (Burbulis et al., 2007: Adler et 
al., 2008; Malou et al., 2011). The pioneering 
work of Mirkin et al. pushed the limits of protein 
detection to low femtomolar levels. Ultrasensitive 
detection is achieved by the introduction of 15 nm 
gold nanoparticles co-loaded with analyte-specific 
antibodies and many copies of DNA reporters 
(extensively reviewed previously (Rosi et al., 2005; 
Giljohann et al., 2009)). The DNA reporters are finally 
detected by hybridization onto a microarray by a 
conventional flatbed scanner. After significant fine-tuning 
of the assay format (Bao et al., 2006) this 
technology showed improved dose response and has 
even become an analytically useful assay (Verigene 
system; Nanosphere). 
Alternative immuno-PCR formats based on 
nanostructures have been reported. For example, 
Mason et al. (2006) developed a liposome-based 
PCR detection construct where the DNA reporters 
were encapsulated inside the lipid bilayer of a 
115 nm liposome into which ganglioside receptors 
(known to bind biological toxins, including cholera 
toxin) were incorporated and reported sub-attomolar 
detection sensitivities for cholera toxin in human 
urine (Mason et al., 2006). More recently, “generic” 
immuno-liposome constructs were reported that can 
accommodate any biotinylated recognition molecule 
(e.g. antibodies (He et al., 2012)). 
4 Phage as reporters 
Going beyond traditional phage display library 
screening, viruses have taken up new roles as 
building blocks for generation of highly sophisticated 
structures useful in diverse applications such as 
drug delivery and diagnostics (Douglas et al., 
2006). Phage nanoparticles present monodisperse 
but versatile scaolds that can accommodate a 
large number of recognition (antibodies, aptamers, 
lectins, etc) and reporter (enzymes) elements leading 
to ultrasensitive, modular, bio-detection reporters 
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510 
511 
512 Figure 2. 
513 Viruses used in bionanotechnology. (a) Tobacco mosaic virus, TMV 
514 (b) Bacteriophage M13. (c) Cowpea chlorotic mottle virus (d) Cowpea mosaic virus 
515 (CPMV); adapted with permission (Soto {it et al}., 2010). 
516 
517 
518 
519 
520 
521 
522 
523 
524 
525 
Fig. 2. Viruses used in bionanotechnology. (a) Tobacco mosaic virus, TMV (b) Bacteriophage M13. (c) Cowpea 
chlorotic mottle virus (d) Cowpea mosaic virus (CPMV); adapted with permission (Soto et al., 2010). 
(Soto et al., 2010) (Figure 2). For example, 
M13 bacteriophage displaying short peptides that 
recognize small molecular weight compounds (e.g. 
3-phenoxybenzoic acid or brominated diphenyl ether 
47) was used as the anity element in an ELISA 
and detected by an anti-phage antibody conjugated 
to horseradish peroxidase enzyme (HRP) (Kim et 
al., 2009, Kim et al., 2010). Cowpea mosaic 
virus (CPMV) decorated with Cy5 fluorescent 
dye significantly increased assay sensitivity in a 
microarray-based genotyping of Vibrio cholera O139 
(Soto et al., 2006). A highly sensitive and selective 
diagnostic assay for troponin I has been reported 
that utilizes HBV virus nanoparticles. The virus 
particles display antibody-binding protein A that is 
used for the oriented immobilization of the anti-analyte 
antibody as well as a hexahistidine sequence 
so that the chimeric nanoparticles would have a 
strong anity for nickel (Park et al., 2009). The 
analyte-chimeric virus complex is captured on three-dimensional 
nickel nanostructures, sandwiched by an 
anti-analyte monoclonal antibody and finally detected 
by a secondary antibody labeled with quantum 
dots. The sensitivity was surprisingly boosted to 
attomolar level which represents six to seven orders 
of magnitude greater sensitivity than current ELISA 
assays. 
Utilizing PCR-based detection of the phage DNA 
as the signal generating mechanism also promises 
ultrasensitive detection of small molecules (Kim et al., 
2011) and proteins. For example T7 phage modified 
with antibodies was used for the detection of human 
HbsAg using real-time PCR as the output (Zhang et 
al., 2013). 
5 Mass/size detection 
Translating biomolecular recognition into 
nanomechanical signals oers a label-free approach 
of detecting the presence of an analyte (Fritz et 
al., 2000, Majumdar 2002). Specific biomolecular 
reactions confined to one surface of a microfabricated 
diving-board shaped microcantilever beam induce 
surface stress and cause the mechanical bending of the 
cantilever. However, until recently micromechanical 
cantilevers have been limited to detection of purified 
targets in high concentrations. The Manalis group at 
MIT has been developing vacuum-enclosed silicon 
microcantilivers with embedded microchannels of 
picoliter volume (suspended microchannel resonators, 
SMR) whose resonance frequency quantifies the 
mass of the cantilever (Burg et al., 2007, Churana 
et al., 2007). These cantilivers when protected with 
nonfouling surface coatings enable the sensitive 
detection of protein molecules in undiluted serum (von 
Muhlen et al., 2010). A commercial instrument that 
encompasses the suspended microchannel resonators 
(Archimedes; Anity Systems) is now available. 
Particles can also be detected on smaller size 
scales by their reduction of the electrical conductance 
of small orifices. When particles suspended in an 
electrolyte traverse an aperture they cause a change 
in resistance or a blockade of the ionic current 
that is proportional to the particle volume. The 
idea of resistive pulse sensing has been successfully 
commercialized as the Coulter counter in the 1950’s 
for characterization of larger colloidal and cellular 
suspensions, especially blood. Driven by the advances 
in nanofabrication techniques, making 
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Manuscrito sometido a la Revista Mexicana de Ingeniería Química 13
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526 
527 Figure 3. 
528 Nanopore set-up in the IZON qNano instrument, (B) transient current drops created by 
529 particles passing through the nanopore, with a scheme indicating calculations for baseline 
530 duration, blockade full width at half maximum (FWHM) and magnitude (dI) and (C) 
531 DNA hybridization on DNA-functionalized dextran particles; adapted with permission 
532 (Booth {it et al}., 2013). 
533 
534 
Fig. 3. Nanopore set-up in the IZON qNano instrument, (B) transient current drops created by particles passing 
through the nanopore, with a scheme indicating calculations for baseline duration, blockade full width at half 
maximum (FWHM) and magnitude (dI) and (C) DNA hybridization on DNA-functionalized dextran particles; 
adapted with permission (Booth et al., 2013). 
artificial nanoscale pores has been an interesting 
analyte-induced particle aggregation is detected by the 
goal (reviewed in (Kozak et al., 2011)). However, 
increased magnitude of the blockade events (Platt et 
only recently have dynamically-adjustable (tunable) 
al., 2012). 
elastomeric nanopores become available (Garza- 
Licudine et al., 2010, Roberts et al., 2010) as part 
of the qNano particle analyzer (IZON Science Ltd) 
6 Paramagnetic microparticles as 
that allows the characterization of nanoparticles by 
monitoring the magnitude, duration and frequency 
labels 
of the blockade events as the particles traverse the 
nanopore (Drescher et al., 2012). The magnitude 
of the generated blockade depends on the particle-to- 
pore volume ratio and thus for a given aperture 
the measured change in resistance is proportional 
to the particle volume; blockade duration correlates 
with electrophoretic mobility and surface charge. In 
the qNano, the elastomeric membrane allows for 
real-time tuning of the pore size by applying a 
macroscopic stretch to the membrane and enables the 
real-time tuning of the sensitivity of the measurement. 
Beyond particle characterization the device appears 
to be an attractive platform to develop point-of-care 
diagnostics. Recently detection of DNA hybridization 
in the qNano has been reported; upon hybridization 
to complementary DNA, the surface charge of DNA 
functionalized particles changed (Booth et al., 2013) 
(Figure 3). Platt and coworkers have demonstrated 
a proof of concept protein detection assay in which 
We and others have been integrating paramagnetic 
microparticles, traditionally used in o-line sample 
capture, cleanup and concentration (van Reenen et al., 
2013) with optical biosensors for the ultrasensitive 
detection of proteins and pathogens (Mani et al., 
2011). We have been developing microfabricated 
retroreflectors as bio-sensing surfaces. Retroreflectors 
return light directly to its source and are readily 
detectable with inexpensive optics. Suspended corner 
cube retroreflectors (Figure 4), 5 m in size, consisting 
of a transparent epoxy core and three surfaces 
coated with gold are promising ultra-bright labels 
for use in a rapid, low-labor diagnostic platform 
(Sherlock et al., 2011). On the other hand linear 
arrays of retroreflectors combined with micron-sized 
magnetic particles acting as light-blocking labels 
provide a low-cost platform for multiplex detection of 
Manuscrito sometido a la Revista Mexicana de Ingeniería Química 14 
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535 
536 
537 Figure 4. 
538 (Left) Scanning electron micrographs of corner cube retroreflectors. (Right) 
539 Schematic of the fabrication sequence for corner cube retroreflectors; pending 
540 permission (Sherlock {it et al}., 2011). 
541 
542 
Fig. 4. (Left) Scanning electron micrographs of corner cube retroreflectors. (Right) Schematic of the fabrication 
sequence for corner cube retroreflectors; pending permission (Sherlock et al., 2011) 
pathogens (Les reviewed 2013). We have been 
also investigating the use of an implantable 
micron-sized retroreflector-based platform and 
Optical Coherence Tomography (OCT) as a non-invasive 
and depth-resolved imaging technique for 
reflectance measurements of micro-retroreflectors in 
the subcutaneous tissue (Ivers et al., 2010). 
Diraction-based biosensors rely on optical 
scattering and have been explored as sensitive protein 
detection platforms. Signal enhancement techniques 
include micro fabricating solid diraction gratings 
or by inducing, in the presence of analyte, the 
assembly of microbeads into diraction patterns. 
Lee and co-workers have demonstrated an aptamer-based 
assay to detect platelet-derived growth actor B 
on a microprinted gold-coated glass slide where the 
assembled bead patterns allow visual analysis using a 
bright-field microscope (Lee et al., 2010). 
Recently, a microfluidic chip-based magnetic bead 
surface coverage assay has been reported in which 
large magnetic beads that have captured analytes 
from a serum sample ‘roll’ over a pattern of small 
beads functionalized with anti-analyte antibodies, to 
which they can bind selectively, achieving attomolar 
detection sensitivity using optical microscopy (Tekin 
et al., 2013). 
Leveraging existing technology utilized in 
magnetic data storage hard drives has enabled 
dramatic progress to be achieved in the magnetic 
biosensors arena in recent years. Micrometer-sized 
magnetic particles are promising reporters since even 
the most complex biological samples lack detectable 
magnetic background and thus do not interfere with 
the detection mechanism of the magnetic labels. 
In 1998, Baselt and co-workers were the first 
to demonstrate a prototype GMR-based biosensor 
(Baselt et al., 1998). Giant magnetoresistive (GMR) 
spin-valve sensors detect the presence of magnetic 
particles by measuring the change of resistance of 
the conductive layer due to the presence of the 
magnetic particles. Most recently two research groups 
have been developing GMR biosensing devices. The 
Wang group at Stanford has demonstrated multiplex 
protein detection using 50 nm magnetic nanotags 
at subpicomolar levels with a dynamic range of 
more than four orders of magnitude in clinically-relevant 
serum samples without the need for any 
washing protocol (Osterfeld et al., 2008; Gaster et 
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Manuscrito sometido a la Revista Mexicana de Ingeniería Química 15
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al., 2009). The J.-P. Wang group at University of 
Minnesota demonstrated the applicability of sub 13 
nm high-moment magnetic nanoparticles in a novel 
GMR biosensor that achieved detection of as few 
as 600 molecules ( one zeptomole) of streptavidin 
(Srinivasan et al., 2009) and the possibility to rapidly 
quantify femtomolar concentrations of a biomarker in 
human serum in 5 min (Li et al., 2010). 
7 Conductivity 
Inorganic nanostructures exhibit unique tunable 
electrical properties and are exploited as signal 
transduction elements for ultrasensitive, rapid, real-time 
sensing (Rosi et al., 2005; Kierny et al., 2012). 
The tunable conducting properties of 
semiconductor nanowires allow for label-free 
electrical detection of analytes through changes in 
conductance induced by binding events occurring on 
the nanowire surface and thus provide an attractive 
diagnostics platform. Since the first report of electrical 
detection of picomolar concentrations of streptavidin 
in solution in 2001 (Cui et al., 2001) the Lieber 
group has pioneered bottom-up strategies to fabricate 
silicon nanowires and they have demonstrated the 
ultrasensitive detection of various targets including 
proteins, nucleic acids, and viruses (Patolsky et 
al., 2006). Developments in nanowire sensors for 
multiplexed detection of biomolecules have been 
recently reviewed (He et al., 2008). The Lieber group 
has also demonstrated a multiplex assay for three 
cancer markers with a detection of 0.9 pg/mL in 
desalted but undiluted serum samples (Zheng et al., 
2005). 
Carbon has been showing great potential in its 
newly-popular forms, carbon nanotubes (CNTs) and 
graphene. Nonspecific binding is always an issue 
with these materials, however. Graphene, a two-dimensional 
hexagonal network of carbon atoms only 
one atom thick, has been extensively investigated for 
various applications due to its prominent structural 
and electrical properties, and can be used as the 
basis of extremely powerful biosensor systems and 
integrated assays with high sensitivity. A number of 
studies reported the use of graphene in biosensors, 
and the electrical detection of biomolecules using 
ultrathin 2D graphene sheets can potentially achieve 
high sensitivity. 
Carbon nanotubes (CNTs) are hollow cylindrical 
nanostructures composed of single or multiple sheets 
of graphene containing carbon atoms in a honeycomb 
arrangement. Single-wall CNTs (SWNT) arrayed 
vertically are electrically conductive and allow for 
the construction of high-density sensors with high 
sensitivity. SWNT arrays combined with multiwall 
carbon nanotubes decorated with multiple copies of 
antibodies and enzyme reporters have achieved highly 
sensitive detection of a cancer biomarker in serum and 
in tissue lysates (Yu et al., 2006). More recently, Cai 
et al. (2010), fabricated arrays of carbon nanotube 
tips with molecular-imprinted polymer coating for 
ultrasensive sensing of proteins. 
Concluding remarks 
Nanoscience, nanotechnology, and advanced 
fabrication methods have made access to previously-impossible 
structures almost routine. Chemical 
engineers are taking advantage of these new tools, 
integrating them into a wide range of promising new 
technologies. The future of this synergy looks very 
promising. 
Acknowledgments 
RCW acknowledges the Robert A. Welch Foundation 
for support under grant E-1264, and the Hungton- 
Woestemeyer Professorship. 
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Nanobiotechnology in medical diagnostics

  • 1. Revista Mexicana de Ingeniería Química CONTENIDO Volumen 8, número 3, 2009 / Volume 8, number 3, 2009 213 Derivation and application of the Stefan-Maxwell equations (Desarrollo y aplicación de las ecuaciones de Stefan-Maxwell) Stephen Whitaker Biotecnología / Biotechnology 245 Modelado de la biodegradación en biorreactores de lodos de hidrocarburos totales del petróleo intemperizados en suelos y sedimentos (Biodegradation modeling of sludge bioreactors of total petroleum hydrocarbons weathering in soil and sediments) S.A. Medina-Moreno, S. Huerta-Ochoa, C.A. Lucho-Constantino, L. Aguilera-Vázquez, A. Jiménez- González y M. Gutiérrez-Rojas 259 Crecimiento, sobrevivencia y adaptación de Bifidobacterium infantis a condiciones ácidas (Growth, survival and adaptation of Bifidobacterium infantis to acidic conditions) L. Mayorga-Reyes, P. Bustamante-Camilo, A. Gutiérrez-Nava, E. Barranco-Florido y A. Azaola- Espinosa 265 Statistical approach to optimization of ethanol fermentation by Saccharomyces cerevisiae in the presence of Valfor® zeolite NaA (Optimización estadística de la fermentación etanólica de Saccharomyces cerevisiae en presencia de zeolita Valfor® zeolite NaA) G. Inei-Shizukawa, H. A. Velasco-Bedrán, G. F. Gutiérrez-López and H. Hernández-Sánchez Ingeniería de procesos / Process engineering 271 Localización de una planta industrial: Revisión crítica y adecuación de los criterios empleados en esta decisión (Plant site selection: Critical review and adequation criteria used in this decision) J.R. Medina, R.L. Romero y G.A. Pérez Revista Mexicana de Ingenier´ıa Qu´ımica Academia Mexicana de Investigaci´on y Docencia en Ingenier´ıa Qu´ımica, A.C. 1 Volumen 13, N´umero 1, Abril 2013 ISSN 1665-2738 1 Vol. 13, No. 1 (2014) 9-18 NANOBIOTECHNOLOGY FOR MEDICAL DIAGNOSTICS NANOBIOTECNOLOGI´A PARA EL DIAGNO´ STICO ME´DICO K. Kourentzi1 and R. C. Willson1;2;3;4 1Department of Chemical Biomolecular Engineering, University of Houston, Houston, TX 77204, USA. 2Department of Biology Biochemistry, University of Houston, Houston, TX 77004, USA 3Houston Methodist Research Institute, Houston, TX, 77030, USA 4Centro de Biotecnolog´ıa FEMSA, Departamento de Biotecnolog´ıa e Ingenier´ıa de Alimentos, Tecnol´ogico de Monterrey, Monterrey, NL 64849, Mexico Received June 14, 2013; Accepted December 31, 2013 Abstract Traditional core areas of chemical engineering education are being extended by new expertise in science and engineering at the molecular and nanometer scale. Chemical engineers have been pursuing a dynamic role in the design and development of new generations of diagnostic platforms exploiting dierent nanomaterials and “are the forefront of this rapidly developing field, with the potential to propel discoveries from the bench to bedside” (Ruan et al., 2012). Nanobiotechnology leverages existing expertise from engineering and biology, promotes interdisciplinary discoveries and addresses key elements of next-generation clinical applications. In the present review we attempt to give an overview of the latest technologies that in our opinion hold great promise as the basis of powerful biodiagnostic tools. Keywords: bioassays, ELISA, Immuno-PCR, phage, nanofabrication. Resumen La ´areas tradicionales de la educaci´on en ingenier´ıa qu´ımica est´an siendo extendidas por nuevas experiencias en ciencia e ingenier´ıa a escalas molecular y nanom´etrica. Los ingenieros qu´ımicos has estado persiguiendo jugar un rol din´amico en el dise˜no y desarrollo de nuevas generaciones de plataformas de diagn´ostico explotando diferentes nanomateriales y “son el frente de este campo que se encuentra r´apidamente en desarrollo, con el potencial de impulsar descubrimientos que vayan desde el laboratorio hasta el tratamiento de pacientes.” (Ruan et al., 2012). La nanobiotecnolog´ıa sirve como palanca en la experiencia que se tiene en ingenier´ıa y biolog´ıa, promueve descubrimientos interdisciplinarios y atiende elementos clave de la siguiente generaci´on de aplicaciones cl´ınicas. En la presente revisi´on tratamos de proporcionar un visi´on general de las ´ultimas tecnolog´ıas que en nuestra opini´on constituyen una gran promesa como base para herramientas poderosas de diagn´ostico. Palabras clave: bioensayos, ELISA, Inmuno-PCR, fago, nanofabricaci´on. 1 The state of the art-ELISA and PCR We begin with a brief discussion of the two most widely-used technologies, which are being advanced by the integration of nanoscale elements and to which new approaches are inevitably compared. For 40 years, the gold standard for detecting protein molecules has been ELISA (enzyme -linked immunosorbent assay) in which a surface-captured analyte is detected by binding an antibody conjugated to a signal-generating enzyme reporter. Enzymes can generate absorbance, fluorescence, chemiluminescence or luminescence from appropriate substrates, and each of these is commonly used with proper instrumentation. Technical innovations such as miniaturization, integration with microfluidics (e.g. GyroLab) and au- Corresponding author. E-mail: willson@uh.edu +1-713-743-4308 Publicado por la Academia Mexicana de Investigaci´on y Docencia en Ingenier´ıa Qu´ımica A.C. 9
  • 2. Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 Figure 1. Detection of protein biomolecules; adapted with permission (Giljohann {it et al}., Manuscrito sometido a la Revista Mexicana de Ingeniería Química 12 2009). Fig. 1. Detection of protein biomolecules; adapted with permission (Giljohann et al., 2009). tomation, along with engineered reporters that carry multiple enzymes (e.g. 10 nm gold nanoparticles (Jia et al., 2009)) and development of sensitive substrates have taken the classic assay to a new level, but sensitivity (Figure 1) and narrow linear dynamic range remain still an issue. Using PCR, detection of nucleic acids achieves remarkable sensitivity, down to a few molecules, by exploiting the natural mechanisms of DNA replication during cell division. PCR, or “polymerase chain reaction”, the Nobel-recognized 1983 discovery of Dr. Kary Mullis, is used to amplify a specific region of a given DNA molecule bounded by two complementary DNA primers using a heat-stable DNA-copying polymerase. Heating denatures the double-stranded target into two single strands, each of which is made double-stranded by polymerase extension of the complementary primer, so that the target sequence is doubled in concentration. The reaction is repeated multiple times and leads to exponential amplification of the DNA fragment. After tens of cycles, million-fold amplification of the DNA target region makes detection relatively easy, but at the cost of time and complex temperature-cycling PCR apparatus. Note that most of the emerging nano-bio- diagnostic methods depend upon molecular recognition, in which a molecule such as an antibody or DNA probe, binds or hybridizes to its target. Biochemistry and physiology depend on molecular recognition in every aspect of their functioning, and the “nano” side of a bio-nano collaboration often is most impressed by the ability of the “bio” side to obtain specific, high-anity recognition tools, which bind the analyte of interest. The essential following element of a complete diagnostic is the transduction of this recognition and binding into a human-readable output signal, and it is in this transduction step that nanostructured elements usually make their contribution. This review is organized according to signal transduction methods used for detection. 2 Optical readout Metal nanoparticles (typically gold and silver particles with diameters ranging from 10-150 nm) support surface plasmons (oscillations of the electrons at the nanoparticle surface) that result in extraordinary optical properties that are not exhibited by any other class of material (Saha et al., 2012; Weintraub, 2013). By changing their size, shape, and surface coating, the colors of nanoparticles can be tuned across the visible and near-infrared region of the electromagnetic spectrum. Solutions of spherical gold nanoparticles are ruby red in color due to the strong scattering and absorption in the green region of the spectrum. Solutions of silver nanoparticles are yellow due to the plasmon resonance in the blue region of the spectrum (red and green light are unaected). Sensors utilizing plasmonic nanoparticles allow for a rather simple detection, even by optical means. Mirkin and co-workers were the first to utilize metal nanoparticles for the plasmonic-based detection of nucleic acids (Mirkin et al., 1996; Elghanian et al., 1997). The analyte molecules cause the bridging of DNA-functionalized metal nanoparticles (gold or silver) generating aggregates with a concomitant change of solution color from red to blue as a consequence of interacting particle surface plasmons and aggregate scattering properties. More recently, de Rica and Stevens reported a plasmonic ELISA (de la Rica et al., 2012) for the ultrasensitive detection of proteins with the naked eye. Their significant observation was that nanoparticles can be generated by the reduction of gold ions in the presence of hydrogen peroxide. However, the concentration of hydrogen 10 www.rmiq.org
  • 3. Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 peroxide directly aects the reaction and in the presence of high concentration of hydrogen peroxide, a red colored solution of non-aggregated, spherical gold particles is formed. Then they adapted this process as a signal generation mechanism for ELISA by utilizing the very-active catalase enzyme that when bound by the analyte decreases the concentration of hydrogen peroxide and favors the generation of blue-colored aggregates of nanoparticles. The authors demonstrated the detection of HIV-1 capsid antigen p24 at ag/ml level in serum by visual scoring and thus they opened the road for the adoption of classical ELISA in settings, e.g., in developing countries, that lack sophisticated laboratory instrumentation. Another approach pioneered by Halas, West, and co-workers is based on the rational design of nanoshells (core-shell spherical particles consisting of a dielectric core with a thin, metallic shell) that attenuate light strongly in the near-infrared region where blood does not. Using nanoshells, they were able to demonstrate an immunoassay performed in whole blood without the need for purification/separation steps (Hirsch et al., 2005). Ultimate sensitivity is at the level of single molecules. Counting single molecules comes with practical challenges but oers distinct advantages over ensemble measurements (Walt 2013). Building on their fiber optic microarray technology, Walt group at Tufts have developed a single-molecule digital ELISA (Rissin et al., 2010) where single immunocomplexes captured on beads are detected in arrays of femtoliter size wells using fluorescence imaging. They reported the detection of PSA in serum in femtomolar level using the same reagents as in a classic ELISA. The technology (Single Molecule Array, SiMoA) has been commercialized and a pilot study to quantitatively measure biomarkers of inflammation from patients with Crohn’s disease has been reported (Song et al., 2011). Quantum dots (Q dots), semiconductor nanocrystals (2-8 nm), exhibit size-dependent optical and electrical properties (Alivisatos 1996) and show great promise as multiplexable fluorescent reporters in diagnostic assays (reviewed in (Samir et al., 2012)). 3 Immuno-PCR The combination of antibody-like protein molecular recognition with PCR’s enormous DNA amplification sensitivity is an intuitively attractive concept which has been visited repeatedly since Sano et al. (1992) coined the term Immuno-PCR in 1992. In Immuno-PCR, a chimeric molecule is used consisting of an antibody (which recognizes the target) linked to a sensitively-detectable amplifiable DNA. Immuno-PCR generally achieves a 100-10,000- fold improvement in the detection limit compared to standard ELISAs, but has still failed ubiquitously to establish itself in the analytical laboratory, mainly due to the complicated preparation of immuno- PCR reagents, non-specific binding, and lack of reproducibility (Burbulis et al., 2007: Adler et al., 2008; Malou et al., 2011). The pioneering work of Mirkin et al. pushed the limits of protein detection to low femtomolar levels. Ultrasensitive detection is achieved by the introduction of 15 nm gold nanoparticles co-loaded with analyte-specific antibodies and many copies of DNA reporters (extensively reviewed previously (Rosi et al., 2005; Giljohann et al., 2009)). The DNA reporters are finally detected by hybridization onto a microarray by a conventional flatbed scanner. After significant fine-tuning of the assay format (Bao et al., 2006) this technology showed improved dose response and has even become an analytically useful assay (Verigene system; Nanosphere). Alternative immuno-PCR formats based on nanostructures have been reported. For example, Mason et al. (2006) developed a liposome-based PCR detection construct where the DNA reporters were encapsulated inside the lipid bilayer of a 115 nm liposome into which ganglioside receptors (known to bind biological toxins, including cholera toxin) were incorporated and reported sub-attomolar detection sensitivities for cholera toxin in human urine (Mason et al., 2006). More recently, “generic” immuno-liposome constructs were reported that can accommodate any biotinylated recognition molecule (e.g. antibodies (He et al., 2012)). 4 Phage as reporters Going beyond traditional phage display library screening, viruses have taken up new roles as building blocks for generation of highly sophisticated structures useful in diverse applications such as drug delivery and diagnostics (Douglas et al., 2006). Phage nanoparticles present monodisperse but versatile scaolds that can accommodate a large number of recognition (antibodies, aptamers, lectins, etc) and reporter (enzymes) elements leading to ultrasensitive, modular, bio-detection reporters www.rmiq.org 11
  • 4. Kourentzi and Willson/ Revista Mexicana de In genier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 510 511 512 Figure 2. 513 Viruses used in bionanotechnology. (a) Tobacco mosaic virus, TMV 514 (b) Bacteriophage M13. (c) Cowpea chlorotic mottle virus (d) Cowpea mosaic virus 515 (CPMV); adapted with permission (Soto {it et al}., 2010). 516 517 518 519 520 521 522 523 524 525 Fig. 2. Viruses used in bionanotechnology. (a) Tobacco mosaic virus, TMV (b) Bacteriophage M13. (c) Cowpea chlorotic mottle virus (d) Cowpea mosaic virus (CPMV); adapted with permission (Soto et al., 2010). (Soto et al., 2010) (Figure 2). For example, M13 bacteriophage displaying short peptides that recognize small molecular weight compounds (e.g. 3-phenoxybenzoic acid or brominated diphenyl ether 47) was used as the anity element in an ELISA and detected by an anti-phage antibody conjugated to horseradish peroxidase enzyme (HRP) (Kim et al., 2009, Kim et al., 2010). Cowpea mosaic virus (CPMV) decorated with Cy5 fluorescent dye significantly increased assay sensitivity in a microarray-based genotyping of Vibrio cholera O139 (Soto et al., 2006). A highly sensitive and selective diagnostic assay for troponin I has been reported that utilizes HBV virus nanoparticles. The virus particles display antibody-binding protein A that is used for the oriented immobilization of the anti-analyte antibody as well as a hexahistidine sequence so that the chimeric nanoparticles would have a strong anity for nickel (Park et al., 2009). The analyte-chimeric virus complex is captured on three-dimensional nickel nanostructures, sandwiched by an anti-analyte monoclonal antibody and finally detected by a secondary antibody labeled with quantum dots. The sensitivity was surprisingly boosted to attomolar level which represents six to seven orders of magnitude greater sensitivity than current ELISA assays. Utilizing PCR-based detection of the phage DNA as the signal generating mechanism also promises ultrasensitive detection of small molecules (Kim et al., 2011) and proteins. For example T7 phage modified with antibodies was used for the detection of human HbsAg using real-time PCR as the output (Zhang et al., 2013). 5 Mass/size detection Translating biomolecular recognition into nanomechanical signals oers a label-free approach of detecting the presence of an analyte (Fritz et al., 2000, Majumdar 2002). Specific biomolecular reactions confined to one surface of a microfabricated diving-board shaped microcantilever beam induce surface stress and cause the mechanical bending of the cantilever. However, until recently micromechanical cantilevers have been limited to detection of purified targets in high concentrations. The Manalis group at MIT has been developing vacuum-enclosed silicon microcantilivers with embedded microchannels of picoliter volume (suspended microchannel resonators, SMR) whose resonance frequency quantifies the mass of the cantilever (Burg et al., 2007, Churana et al., 2007). These cantilivers when protected with nonfouling surface coatings enable the sensitive detection of protein molecules in undiluted serum (von Muhlen et al., 2010). A commercial instrument that encompasses the suspended microchannel resonators (Archimedes; Anity Systems) is now available. Particles can also be detected on smaller size scales by their reduction of the electrical conductance of small orifices. When particles suspended in an electrolyte traverse an aperture they cause a change in resistance or a blockade of the ionic current that is proportional to the particle volume. The idea of resistive pulse sensing has been successfully commercialized as the Coulter counter in the 1950’s for characterization of larger colloidal and cellular suspensions, especially blood. Driven by the advances in nanofabrication techniques, making 12 www.rmiq.org Manuscrito sometido a la Revista Mexicana de Ingeniería Química 13
  • 5. Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 526 527 Figure 3. 528 Nanopore set-up in the IZON qNano instrument, (B) transient current drops created by 529 particles passing through the nanopore, with a scheme indicating calculations for baseline 530 duration, blockade full width at half maximum (FWHM) and magnitude (dI) and (C) 531 DNA hybridization on DNA-functionalized dextran particles; adapted with permission 532 (Booth {it et al}., 2013). 533 534 Fig. 3. Nanopore set-up in the IZON qNano instrument, (B) transient current drops created by particles passing through the nanopore, with a scheme indicating calculations for baseline duration, blockade full width at half maximum (FWHM) and magnitude (dI) and (C) DNA hybridization on DNA-functionalized dextran particles; adapted with permission (Booth et al., 2013). artificial nanoscale pores has been an interesting analyte-induced particle aggregation is detected by the goal (reviewed in (Kozak et al., 2011)). However, increased magnitude of the blockade events (Platt et only recently have dynamically-adjustable (tunable) al., 2012). elastomeric nanopores become available (Garza- Licudine et al., 2010, Roberts et al., 2010) as part of the qNano particle analyzer (IZON Science Ltd) 6 Paramagnetic microparticles as that allows the characterization of nanoparticles by monitoring the magnitude, duration and frequency labels of the blockade events as the particles traverse the nanopore (Drescher et al., 2012). The magnitude of the generated blockade depends on the particle-to- pore volume ratio and thus for a given aperture the measured change in resistance is proportional to the particle volume; blockade duration correlates with electrophoretic mobility and surface charge. In the qNano, the elastomeric membrane allows for real-time tuning of the pore size by applying a macroscopic stretch to the membrane and enables the real-time tuning of the sensitivity of the measurement. Beyond particle characterization the device appears to be an attractive platform to develop point-of-care diagnostics. Recently detection of DNA hybridization in the qNano has been reported; upon hybridization to complementary DNA, the surface charge of DNA functionalized particles changed (Booth et al., 2013) (Figure 3). Platt and coworkers have demonstrated a proof of concept protein detection assay in which We and others have been integrating paramagnetic microparticles, traditionally used in o-line sample capture, cleanup and concentration (van Reenen et al., 2013) with optical biosensors for the ultrasensitive detection of proteins and pathogens (Mani et al., 2011). We have been developing microfabricated retroreflectors as bio-sensing surfaces. Retroreflectors return light directly to its source and are readily detectable with inexpensive optics. Suspended corner cube retroreflectors (Figure 4), 5 m in size, consisting of a transparent epoxy core and three surfaces coated with gold are promising ultra-bright labels for use in a rapid, low-labor diagnostic platform (Sherlock et al., 2011). On the other hand linear arrays of retroreflectors combined with micron-sized magnetic particles acting as light-blocking labels provide a low-cost platform for multiplex detection of Manuscrito sometido a la Revista Mexicana de Ingeniería Química 14 www.rmiq.org 13
  • 6. Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 535 536 537 Figure 4. 538 (Left) Scanning electron micrographs of corner cube retroreflectors. (Right) 539 Schematic of the fabrication sequence for corner cube retroreflectors; pending 540 permission (Sherlock {it et al}., 2011). 541 542 Fig. 4. (Left) Scanning electron micrographs of corner cube retroreflectors. (Right) Schematic of the fabrication sequence for corner cube retroreflectors; pending permission (Sherlock et al., 2011) pathogens (Les reviewed 2013). We have been also investigating the use of an implantable micron-sized retroreflector-based platform and Optical Coherence Tomography (OCT) as a non-invasive and depth-resolved imaging technique for reflectance measurements of micro-retroreflectors in the subcutaneous tissue (Ivers et al., 2010). Diraction-based biosensors rely on optical scattering and have been explored as sensitive protein detection platforms. Signal enhancement techniques include micro fabricating solid diraction gratings or by inducing, in the presence of analyte, the assembly of microbeads into diraction patterns. Lee and co-workers have demonstrated an aptamer-based assay to detect platelet-derived growth actor B on a microprinted gold-coated glass slide where the assembled bead patterns allow visual analysis using a bright-field microscope (Lee et al., 2010). Recently, a microfluidic chip-based magnetic bead surface coverage assay has been reported in which large magnetic beads that have captured analytes from a serum sample ‘roll’ over a pattern of small beads functionalized with anti-analyte antibodies, to which they can bind selectively, achieving attomolar detection sensitivity using optical microscopy (Tekin et al., 2013). Leveraging existing technology utilized in magnetic data storage hard drives has enabled dramatic progress to be achieved in the magnetic biosensors arena in recent years. Micrometer-sized magnetic particles are promising reporters since even the most complex biological samples lack detectable magnetic background and thus do not interfere with the detection mechanism of the magnetic labels. In 1998, Baselt and co-workers were the first to demonstrate a prototype GMR-based biosensor (Baselt et al., 1998). Giant magnetoresistive (GMR) spin-valve sensors detect the presence of magnetic particles by measuring the change of resistance of the conductive layer due to the presence of the magnetic particles. Most recently two research groups have been developing GMR biosensing devices. The Wang group at Stanford has demonstrated multiplex protein detection using 50 nm magnetic nanotags at subpicomolar levels with a dynamic range of more than four orders of magnitude in clinically-relevant serum samples without the need for any washing protocol (Osterfeld et al., 2008; Gaster et 14 www.rmiq.org Manuscrito sometido a la Revista Mexicana de Ingeniería Química 15
  • 7. Kourentzi and Willson/ Revista Mexicana de Ingenier´ıa Qu´ımica Vol. 13, No. 1 (2014) 9-18 al., 2009). The J.-P. Wang group at University of Minnesota demonstrated the applicability of sub 13 nm high-moment magnetic nanoparticles in a novel GMR biosensor that achieved detection of as few as 600 molecules ( one zeptomole) of streptavidin (Srinivasan et al., 2009) and the possibility to rapidly quantify femtomolar concentrations of a biomarker in human serum in 5 min (Li et al., 2010). 7 Conductivity Inorganic nanostructures exhibit unique tunable electrical properties and are exploited as signal transduction elements for ultrasensitive, rapid, real-time sensing (Rosi et al., 2005; Kierny et al., 2012). The tunable conducting properties of semiconductor nanowires allow for label-free electrical detection of analytes through changes in conductance induced by binding events occurring on the nanowire surface and thus provide an attractive diagnostics platform. Since the first report of electrical detection of picomolar concentrations of streptavidin in solution in 2001 (Cui et al., 2001) the Lieber group has pioneered bottom-up strategies to fabricate silicon nanowires and they have demonstrated the ultrasensitive detection of various targets including proteins, nucleic acids, and viruses (Patolsky et al., 2006). Developments in nanowire sensors for multiplexed detection of biomolecules have been recently reviewed (He et al., 2008). The Lieber group has also demonstrated a multiplex assay for three cancer markers with a detection of 0.9 pg/mL in desalted but undiluted serum samples (Zheng et al., 2005). Carbon has been showing great potential in its newly-popular forms, carbon nanotubes (CNTs) and graphene. Nonspecific binding is always an issue with these materials, however. Graphene, a two-dimensional hexagonal network of carbon atoms only one atom thick, has been extensively investigated for various applications due to its prominent structural and electrical properties, and can be used as the basis of extremely powerful biosensor systems and integrated assays with high sensitivity. A number of studies reported the use of graphene in biosensors, and the electrical detection of biomolecules using ultrathin 2D graphene sheets can potentially achieve high sensitivity. Carbon nanotubes (CNTs) are hollow cylindrical nanostructures composed of single or multiple sheets of graphene containing carbon atoms in a honeycomb arrangement. Single-wall CNTs (SWNT) arrayed vertically are electrically conductive and allow for the construction of high-density sensors with high sensitivity. SWNT arrays combined with multiwall carbon nanotubes decorated with multiple copies of antibodies and enzyme reporters have achieved highly sensitive detection of a cancer biomarker in serum and in tissue lysates (Yu et al., 2006). More recently, Cai et al. (2010), fabricated arrays of carbon nanotube tips with molecular-imprinted polymer coating for ultrasensive sensing of proteins. Concluding remarks Nanoscience, nanotechnology, and advanced fabrication methods have made access to previously-impossible structures almost routine. Chemical engineers are taking advantage of these new tools, integrating them into a wide range of promising new technologies. The future of this synergy looks very promising. Acknowledgments RCW acknowledges the Robert A. Welch Foundation for support under grant E-1264, and the Hungton- Woestemeyer Professorship. References Adler, M., Wacker, R. and Niemeyer, C. M. (2008). Sensitivity by combination: immuno-PCR and related technologies. Analyst 133, 702-718. Alivisatos, A. P. (1996). Semiconductor clusters, nanocrystals, and quantum dots. Science 271, 933-937. Bao, Y. P., Wei, T. F., Lefebvre, P. A., An, H., He, L., Kunkel, G. T. and Muller, U. R. (2006). Detection of protein analytes via nanoparticle-based bio bar code technology. Analytical Chemistry 78, 2055-2059. Baselt, D. R., Lee, G. U., Natesan, M., Metzger, S. W., Sheehan, P. E. and Colton, R. J. (1998). A biosensor based on magnetoresistance technology. Biosensors and Bioelectronics 13, 731-739. Booth, M. A., Vogel, R., Curran, J. M., Harbison, S. and Travas-Sejdic, J. (2013). Detection www.rmiq.org 15
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