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November4th
2016
Annarita Miccio, Ph.D.
Imagine Institute of genetic diseases, Paris, France
Gene therapy and genome editing technologies for the
treatment of b-hemoglobinopathies
• >350,000 children are born each year with a severe inherited Hb disorder
(WHO, June 2008 ; Weatherall DJ, Blood 2010)
Births with a
pathological Hb disorder
per 1,000 live births
Epidemiology of Hemoglobin disorders
b
αα
b
Hemoglobin
(Hb)
Red Blood Cells
(RBC)
β-hemoglobinopathies
b
αα
b
fetal genes adult genes
HbA
(adult)
β-thalassemia
reduction or absence of β-globin
>200 different mutations
HbA
b
αα
b
α
α
α
α
α
α
α
g g
αα
HbF
(fetal)
chr11
Hemoglobin
bg
Sickle-cell disease (SCD)
HbS
b
αα
b★★
production of a mutant β-globin
★ SCD Mutated residue
HbS
b
αα
b★★
HbS
b
αα
b★★
HbS
b
αα
b★
Reduced or absent synthesis of β-globin
chain (α-globin precipitates) Intramedullary death of red
blood cell (RBC) precursors Anemia
β-thalassemia
Erythroid development
Sickle cell disease
Sickle-shaped RBCsHbS polymerisation
Vaso-occlusive crises
Anemia
HbS
SCD mutation
(★)
b
αα
b★★
• Red blood cell transfusions: not definitive, side effects
• Pharmacological treatments (pain-killers, hydroxyurea): not definitive, not effective in
all the patients, side effects
• Allogeneic hematopoietic stem cell (HSC) transplantation: definitive but limited by the
donor availability
Therapeutic approaches for β-hemoglobinopathies
HSC (“long-lasting”)
RBC
(half-life:
120 days)
Gene therapy and genome editing for β-hemoglobinopathies
HSCβ-globin expressing
lentiviral vectors
Transplantation of autologous, genetically corrected hematopoietic stem cells is an
alternative therapy for patients lacking a compatible donor
(Miccio et al., PNAS 2008; Cavazzana et al., Nature, 2010)
Genome editing tools
βpr Mini-LCRb-globin gene
Endogenous β-globin locus
Lentiviral vectors for gene therapy of β-hemoglobinopathies
Lentiviral vector
Romero et al., JCI,2013
Miccio et al., PNAS, 2008
Roselliet al., EMBO Mol Med, 2010
Lentiviral vectors for gene therapy of β-hemoglobinopathies
(studies in human cells)
Thalassemic Thalassemic+LV SCD SCD+LV
Partial correction of RBC
RBC
Clinical gene therapy trials for β-hemoglobinopathies (LV)
Transfusion independence after gene therapy of b+thalassemia
Cavazzana et al., Nature, 2010
Transfusion
Conclusions
• Efficacy:
- Transfusion independence observed in b+-thalassemic patients.
- Higher levels of b globin production may be necessary to
correct the b0-thalassemic and SCD phenotype.
Modify the endogenous locus (genome editing)
• Safety:
- No adverse events have been reported so far.
- LV integrate into the genome and have the potential to
deregulate genes.
Genome editing-based approaches for β-
hemoglobinopathies
- Correct the b-globin gene mutations
★
★ SCD or b-thal mutation
Endogenous β-globin locus
fetal genes adult genes
Genome editing-based approaches for β-
hemoglobinopathies
- Increase fetal g-globin levels
★ SCD or b-thal mutation
Persistence of Fetal Hemoglobin benefit
thalassemic and SCD patients
★
Endogenous β-globin locus
fetal genes adult genes
g g
αα
Genome Editing tools
ZFN
CRISPR-Cas9
TALEN
DNA
cut site
gRNA
Editing via
non-homologous end-joining
(NHEJ ≈ error prone)
targeted
disruption
*
Genome editing mechanisms
Editing via
homologous recombination
(HR ≈ accurate)
targeted
correction
★
b-globin gene
SCD mutation★
Fetal g-globin repressors
KO mutation of Fetal g-globin repressors
Genome editing-based approaches for β-
hemoglobinopathies
- Correct the b-globin gene mutations (SCD)
SCD HSC
homologous recombination
b-globin
b-globin gene
b-globin
ZFN
CRISPR/Cas9
RBC
targeted
correction
★b-globin gene
SCD mutation★
Hoban, Blood & Mol. Therapy , 2015
DeWitt, Sci. Transl. Med., 2016
up to 3% of
corrected b-
globin genes
Genome editing-based approaches for β-
hemoglobinopathies
- Increase fetal g-globin levels
★ SCD or b-thal mutation
★
Endogenous β-globin locus
fetal genes adult genes
Genome editing-based approaches for β-
hemoglobinopathies
- Increase fetal g-globin levels
★ SCD or b-thal mutation
★
Endogenous β-globin locus
fetal genes adult genes
g-globin repressors
Genome editing-based approaches for β-
hemoglobinopathies
- Increase fetal g-globin gene expression
★ SCD or b-thal mutation
★
Endogenous β-globin locus
fetal genes adult genes
g-globin repressors
g g
αα
non-homologous end-joining
targeted
disruption
*
Genome editing-based approaches for β-
hemoglobinopathies
- Increase fetal g-globin gene expression
Canver, Nature 2016
SCD cells
ZFN
CRISPR/Cas9
RBC
g repressor
g-repressors= BCL11A, LRF
genes or genomic regions
bound by HbF repressors
Increased g-globin
production
KO mutation of Fetal g-globin repressors Traxler, Nature Medicine 2016
Conclusions
• Efficacy:
- Correct the b-globin gene mutations (SCD): ideal strategy, but
poorly efficient in hematopoietic stem cells (HSC).
- Increase fetal g-globin gene expression: high and curative levels
of endogenous g-globin, not tested HSC
Increase/test genome editing efficiency in HSC
• Safety:
- Theoretically “targeted” genome editing.
- Safety studies to evaluated the off-target activity are mandatory
Improve/test the specificity of the genome editing tools
Thanks!
annarita.miccio@institutimagine.org
Laboratory of Chromatin and Gene Regulation
24, Boulevard du MontParnasse,
Paris, France

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1.1 annaritamiccio

  • 1. November4th 2016 Annarita Miccio, Ph.D. Imagine Institute of genetic diseases, Paris, France Gene therapy and genome editing technologies for the treatment of b-hemoglobinopathies
  • 2. • >350,000 children are born each year with a severe inherited Hb disorder (WHO, June 2008 ; Weatherall DJ, Blood 2010) Births with a pathological Hb disorder per 1,000 live births Epidemiology of Hemoglobin disorders b αα b Hemoglobin (Hb) Red Blood Cells (RBC)
  • 3. β-hemoglobinopathies b αα b fetal genes adult genes HbA (adult) β-thalassemia reduction or absence of β-globin >200 different mutations HbA b αα b α α α α α α α g g αα HbF (fetal) chr11 Hemoglobin bg Sickle-cell disease (SCD) HbS b αα b★★ production of a mutant β-globin ★ SCD Mutated residue HbS b αα b★★ HbS b αα b★★ HbS b αα b★
  • 4. Reduced or absent synthesis of β-globin chain (α-globin precipitates) Intramedullary death of red blood cell (RBC) precursors Anemia β-thalassemia Erythroid development
  • 5. Sickle cell disease Sickle-shaped RBCsHbS polymerisation Vaso-occlusive crises Anemia HbS SCD mutation (★) b αα b★★
  • 6. • Red blood cell transfusions: not definitive, side effects • Pharmacological treatments (pain-killers, hydroxyurea): not definitive, not effective in all the patients, side effects • Allogeneic hematopoietic stem cell (HSC) transplantation: definitive but limited by the donor availability Therapeutic approaches for β-hemoglobinopathies HSC (“long-lasting”) RBC (half-life: 120 days)
  • 7. Gene therapy and genome editing for β-hemoglobinopathies HSCβ-globin expressing lentiviral vectors Transplantation of autologous, genetically corrected hematopoietic stem cells is an alternative therapy for patients lacking a compatible donor (Miccio et al., PNAS 2008; Cavazzana et al., Nature, 2010) Genome editing tools
  • 8. βpr Mini-LCRb-globin gene Endogenous β-globin locus Lentiviral vectors for gene therapy of β-hemoglobinopathies Lentiviral vector
  • 9. Romero et al., JCI,2013 Miccio et al., PNAS, 2008 Roselliet al., EMBO Mol Med, 2010 Lentiviral vectors for gene therapy of β-hemoglobinopathies (studies in human cells) Thalassemic Thalassemic+LV SCD SCD+LV Partial correction of RBC RBC
  • 10. Clinical gene therapy trials for β-hemoglobinopathies (LV)
  • 11. Transfusion independence after gene therapy of b+thalassemia Cavazzana et al., Nature, 2010 Transfusion
  • 12. Conclusions • Efficacy: - Transfusion independence observed in b+-thalassemic patients. - Higher levels of b globin production may be necessary to correct the b0-thalassemic and SCD phenotype. Modify the endogenous locus (genome editing) • Safety: - No adverse events have been reported so far. - LV integrate into the genome and have the potential to deregulate genes.
  • 13. Genome editing-based approaches for β- hemoglobinopathies - Correct the b-globin gene mutations ★ ★ SCD or b-thal mutation Endogenous β-globin locus fetal genes adult genes
  • 14. Genome editing-based approaches for β- hemoglobinopathies - Increase fetal g-globin levels ★ SCD or b-thal mutation Persistence of Fetal Hemoglobin benefit thalassemic and SCD patients ★ Endogenous β-globin locus fetal genes adult genes g g αα
  • 16. Editing via non-homologous end-joining (NHEJ ≈ error prone) targeted disruption * Genome editing mechanisms Editing via homologous recombination (HR ≈ accurate) targeted correction ★ b-globin gene SCD mutation★ Fetal g-globin repressors KO mutation of Fetal g-globin repressors
  • 17. Genome editing-based approaches for β- hemoglobinopathies - Correct the b-globin gene mutations (SCD) SCD HSC homologous recombination b-globin b-globin gene b-globin ZFN CRISPR/Cas9 RBC targeted correction ★b-globin gene SCD mutation★ Hoban, Blood & Mol. Therapy , 2015 DeWitt, Sci. Transl. Med., 2016 up to 3% of corrected b- globin genes
  • 18. Genome editing-based approaches for β- hemoglobinopathies - Increase fetal g-globin levels ★ SCD or b-thal mutation ★ Endogenous β-globin locus fetal genes adult genes
  • 19. Genome editing-based approaches for β- hemoglobinopathies - Increase fetal g-globin levels ★ SCD or b-thal mutation ★ Endogenous β-globin locus fetal genes adult genes g-globin repressors
  • 20. Genome editing-based approaches for β- hemoglobinopathies - Increase fetal g-globin gene expression ★ SCD or b-thal mutation ★ Endogenous β-globin locus fetal genes adult genes g-globin repressors g g αα
  • 21. non-homologous end-joining targeted disruption * Genome editing-based approaches for β- hemoglobinopathies - Increase fetal g-globin gene expression Canver, Nature 2016 SCD cells ZFN CRISPR/Cas9 RBC g repressor g-repressors= BCL11A, LRF genes or genomic regions bound by HbF repressors Increased g-globin production KO mutation of Fetal g-globin repressors Traxler, Nature Medicine 2016
  • 22. Conclusions • Efficacy: - Correct the b-globin gene mutations (SCD): ideal strategy, but poorly efficient in hematopoietic stem cells (HSC). - Increase fetal g-globin gene expression: high and curative levels of endogenous g-globin, not tested HSC Increase/test genome editing efficiency in HSC • Safety: - Theoretically “targeted” genome editing. - Safety studies to evaluated the off-target activity are mandatory Improve/test the specificity of the genome editing tools
  • 23. Thanks! annarita.miccio@institutimagine.org Laboratory of Chromatin and Gene Regulation 24, Boulevard du MontParnasse, Paris, France