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www.egi.eu
@EGI_eInfra
The work of the EGI Foundation
is partly funded by the European Commission
under H2020 Framework Programme
The ascent of scientific computing:
the EGI role and contribution
towards EOSC
IBERGRID 2019
Tiziana Ferrari, EGI Foundation
@EGI_eInfrawww.egi.eu 24/09/2019 2
• 15 years of scientific computing in the EGI Federation – figures and trends
• EGI for open science
• EGI and the European Open Science Cloud
Outline
@EGI_eInfrawww.egi.eu 24/09/2019 3
EGI is a federation of > 250 computing and data centres spread
across Europe and the rest of the world.
47 Countries
12 Integrated
e-Infrastructures
> 71,500 users
31 large-scale
research
collaborations
3,000 Open Access
Publications in 2018
@EGI_eInfrawww.egi.eu 24/09/2019 4
2001: From Design to Implementation
In 2000 the next generation High Energy Physics experiments at CERN
established the design of the first large-scale scientific computing
infrastructure in the Europe.
The EC-funded “DataGrid” project proposal was launched.
@EGI_eInfrawww.egi.eu 24/09/2019 5
EGI User Statistics (Sep 2019)
 BBMRI, ELIXIR
 Bioinformatics
 Neuroimaging
 Structural Biology
 Hematology
 Physical Sciences
LHC, BELLE, ICECUBE,
LOFAR, VIRGO, CTA, XENON,
LSST, SKA, KM3NET, ..
 Biological Sciences
LifeWatch
 Earth Science
EISCAT, EMSO
 Chemical sciences
@EGI_eInfrawww.egi.eu 24/09/2019 6
Data-centric Scientific Computing
IaaS
providers
Federation Services
Orchestration
Platforms
Check-in : Common AuthN and AuthZ across all layers
Research Platforms
Operators
Research Communities
Research Communities
Federated Access
Federated Applications
Federated Data & Compute
@EGI_eInfrawww.egi.eu 24/09/2019 7
Installed Compute Capacity 2011-2019
@EGI_eInfrawww.egi.eu 24/09/2019 8
The EGI Federation (Sep 2019)
5.0 Billion
CPU core
wall time /
year
> 1 Million
computing
cores in
2019
> 740 PB
disk & tape
2,915
service end-
points
@EGI_eInfrawww.egi.eu 24/09/2019 9
EGI Participants (2019)
@EGI_eInfrawww.egi.eu 24/09/2019 10
International Partners
Africa and Arabia
Council for Scientific and
Industrial Research, South Africa
India Centre for
Development of
Advanced Comp.
China
Inst. Of HEP
Chinese Academy
of Sciences
Shanghai Science
and Technology
Innov. Resources
Center
Latin America
Universida de Federal do
Rio de Janeiro
USA
Canada
Asia Pacific Region
Academia Sinica
at Taiwan
> 20 SLAs, 240 Research projects
@EGI_eInfrawww.egi.eu 24/09/2019 11
Federated Operations
@EGI_eInfrawww.egi.eu 24/09/2019 12
EGI Federation Services
Making
services
discoverable
and
orderable
Making services
accessible
Making
services
robust
Making problems
resolvable
Check-in
Helpdesk
Marketplace
Accounting
Monitoring
Applications
DB
Configuration DB
Manage
federated
assets
Federated data
services &
solutions
@EGI_eInfrawww.egi.eu 24/09/2019 13
CPU wall time consumed 2009-2018
+20% annual increase (2018)
@EGI_eInfrawww.egi.eu 24/09/2019 14
• Multi-cloud IaaS with Single Sign-On
• Federation features:
 Common VM image catalogue
 Discovery, accounting, SLO monitoring
 Unified GUI dashboard
May 21, 2014: EGI Federated Cloud is launched
Cloud Compute
Cloud Container
Compute BETA Training Infrastructure
Online Storage
Applications on
Demand BETA
Notebooks BETA
EGI Services powered by the Cloud Federation
@EGI_eInfrawww.egi.eu 24/09/2019 15
Scientific Disciplines/Cloud
Humanities: CLARIN (2018), DARIAH (+28%, 2017),
Life Sciences: ELIXIR (+104%, 2017)
Environment: EMSO (2018), LifeWatch (+45%, 2015)
BIOISI (+45%, 2016), BIOMED (+575%, 2016), CHIPSTER (+256%, 2016),
GEOHAZARDS (+19%, 2016), OpenCOAST (2018), EXTRAS (2018),
@EGI_eInfrawww.egi.eu 24/09/2019 16
Cloud Accounting Jan 2017 – June 2019
The IBERGRID Contribution
@EGI_eInfrawww.egi.eu 24/09/2019 17
Scientific Computing for Open Science
Open data, open software, open applications
@EGI_eInfrawww.egi.eu 24/09/2019 18
Sharing of data across research groups
LIGO-VIRGO CollaborationLHC Collaboration
3000 open access publications / year
@EGI_eInfrawww.egi.eu 24/09/2019 19
Open Data for the UN Sustainable
Development Goals
Innovative Pilots Business Pilots
@EGI_eInfrawww.egi.eu 24/09/2019 20
Open software and solutions
• ESRF (France)
• ILL (France)
• ESS (Sweden)
• ELI-DC (Belgium)
• XFEL (Germany)
• CERIC-ERIC (Italy)
• EGI Foundation (Netherlands)
Notebooks
Federated Cloud
@EGI_eInfrawww.egi.eu 24/09/2019 21
• Proteins and biomolecules interact in a
complex network
• Glitches in this network can cause diseases
like cancer
• Researchers use 3D models to study how
protein and biomolecules interact
• This structural information is key to
understand the origins of disease and to
develop new drugs
Sharing of scientific applications
Understanding the pathways to disease:
the WeNMR community of practice
@EGI_eInfrawww.egi.eu 24/09/2019 22
The WeNMR service portfolio
60
Million
CPU
Hours
+120%
Q1-Q2
2019
250 TB
storage
@EGI_eInfrawww.egi.eu 24/09/2019 23
Geo Distribution of the WeNMR Users
https://wenmr.science.uu.nl/user_map
@EGI_eInfrawww.egi.eu 24/09/2019 24
EGI and the European Open Science Cloud
Data, applications and computing infrastructure as integrated solution
@EGI_eInfrawww.egi.eu 24/09/2019 25
• Growing demand of Cloud access to HTC, GPU and HPC resources
 Machine learning adopted by many applications running in the EGI Federation
 Hybrid provisioning is key
• End-users engaged at the SaaS level
 Easy to use solutions bring together
o Federated AAI
o Federated data discovery and management
o Data analytics capabilities
• Data-centric approach to Cloud
 Zero download access to large research data holdings e.g Copernicus
Towards a data-centric compute
infrastructure
26
Climate (big) data challenges and scientific workflow
Big data from simulations
The volume of worldwide climate
data is expanding rapidly, creating
challenges for both physical
archiving and sharing, as well as for
ease of access and finding what’s
needed, particularly if you are not a
climate scientist.
Scientific workflow
• Still mostly based on the workflow:
search, locate, download, analyze,
visualize
• client-side and sequential nature
of the current approach
• Strong need for server-side
appoaches with advanced parallel
capabilities and no more data
download
Credits: Hannes Thiemann/DKRZ
@EGI_eInfrawww.egi.eu 24/09/2019 27
Federating data in a multi-cloud with
the EGI DataHub
JOHN’S SPACES
SENTINEL 2
DEEP LEARNING
PUBLICATIONSSARA’S SPACES
SENTINEL 2
SKY MAPS
MY DATA
A cloud provider:
Physical storage for
files
A space: Organisation of
files exposed to the user
(Directory structure)
@EGI_eInfrawww.egi.eu 24/09/2019 28
Example: EGI Notebooks
EGI notebooks
server
Federated files
appear as a
directory structure
for the user
@EGI_eInfrawww.egi.eu 24/09/2019 29
@EGI_eInfrawww.egi.eu 24/09/2019 30
@EGI_eInfrawww.egi.eu 24/09/2019 31
8
Key Exploitable Results and Innovation Roles
Services in the
EOSC service
portfolio
EOSC Portal and
Marketplace
Training Courses
and Materials
Interoperability &
Integration
Guidelines
Digital Innovation
Hub
Rules of
Participation
Service
Management
System
Internal Services in
the Hub Portfolio
Business and
Sustainability
Models
Service
Providers
EOSC Hub
Operators
Researche
rs and
Research
Communit
ies
Enterprise
Education
Training &
Support
EOSC Portal/Marketplace
development and operations
Compute and
Data analytics
HTC & Cloud
IaaS/PaaS/SaaS
Coordination &
Infrastructure
Security policy
coordination
Coordination
Helpdesk/
Accounting/
Monitoring/
AAI
Coordination
Compute and Data Analytics
@EGI_eInfrawww.egi.eu 24/09/2019 32
EGI project proposal for INFRAEOSC-07 A1
@EGI_eInfrawww.egi.eu 24/09/2019 33
EGI tiered architecture
@EGI_eInfrawww.egi.eu 24/09/2019 34
• Scientific computing infrastructures are a necessary instrument of
scientific excellence and open science in Europe
• EGI: from HTC infrastructure, to hybrid HTC & HPC infrastructure
supporting cloud IaaS, PaaS, SaaS access
 Federated identity provisioning and access
 Federated data management towards exabyte scale data processing
• European Open Science Cloud
 Supporting the entire research data lifecycle from production to zero
download data exploitation
Conclusions
This work by the EGI Foundation
is licensed under a Creative Commons
Attribution 4.0 International License.
Questions?
Thank you
for your attention.
www.egi.eu
@EGI_eInfra
EGI: Advanced Computing for Research
The work of the EGI Foundation
is partly funded by the European Commission
under H2020 Framework Programme

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The ascent of scientific computing: the EGI role and contribution towards the European Open Science Cloud

  • 1. www.egi.eu @EGI_eInfra The work of the EGI Foundation is partly funded by the European Commission under H2020 Framework Programme The ascent of scientific computing: the EGI role and contribution towards EOSC IBERGRID 2019 Tiziana Ferrari, EGI Foundation
  • 2. @EGI_eInfrawww.egi.eu 24/09/2019 2 • 15 years of scientific computing in the EGI Federation – figures and trends • EGI for open science • EGI and the European Open Science Cloud Outline
  • 3. @EGI_eInfrawww.egi.eu 24/09/2019 3 EGI is a federation of > 250 computing and data centres spread across Europe and the rest of the world. 47 Countries 12 Integrated e-Infrastructures > 71,500 users 31 large-scale research collaborations 3,000 Open Access Publications in 2018
  • 4. @EGI_eInfrawww.egi.eu 24/09/2019 4 2001: From Design to Implementation In 2000 the next generation High Energy Physics experiments at CERN established the design of the first large-scale scientific computing infrastructure in the Europe. The EC-funded “DataGrid” project proposal was launched.
  • 5. @EGI_eInfrawww.egi.eu 24/09/2019 5 EGI User Statistics (Sep 2019)  BBMRI, ELIXIR  Bioinformatics  Neuroimaging  Structural Biology  Hematology  Physical Sciences LHC, BELLE, ICECUBE, LOFAR, VIRGO, CTA, XENON, LSST, SKA, KM3NET, ..  Biological Sciences LifeWatch  Earth Science EISCAT, EMSO  Chemical sciences
  • 6. @EGI_eInfrawww.egi.eu 24/09/2019 6 Data-centric Scientific Computing IaaS providers Federation Services Orchestration Platforms Check-in : Common AuthN and AuthZ across all layers Research Platforms Operators Research Communities Research Communities Federated Access Federated Applications Federated Data & Compute
  • 7. @EGI_eInfrawww.egi.eu 24/09/2019 7 Installed Compute Capacity 2011-2019
  • 8. @EGI_eInfrawww.egi.eu 24/09/2019 8 The EGI Federation (Sep 2019) 5.0 Billion CPU core wall time / year > 1 Million computing cores in 2019 > 740 PB disk & tape 2,915 service end- points
  • 10. @EGI_eInfrawww.egi.eu 24/09/2019 10 International Partners Africa and Arabia Council for Scientific and Industrial Research, South Africa India Centre for Development of Advanced Comp. China Inst. Of HEP Chinese Academy of Sciences Shanghai Science and Technology Innov. Resources Center Latin America Universida de Federal do Rio de Janeiro USA Canada Asia Pacific Region Academia Sinica at Taiwan > 20 SLAs, 240 Research projects
  • 12. @EGI_eInfrawww.egi.eu 24/09/2019 12 EGI Federation Services Making services discoverable and orderable Making services accessible Making services robust Making problems resolvable Check-in Helpdesk Marketplace Accounting Monitoring Applications DB Configuration DB Manage federated assets Federated data services & solutions
  • 13. @EGI_eInfrawww.egi.eu 24/09/2019 13 CPU wall time consumed 2009-2018 +20% annual increase (2018)
  • 14. @EGI_eInfrawww.egi.eu 24/09/2019 14 • Multi-cloud IaaS with Single Sign-On • Federation features:  Common VM image catalogue  Discovery, accounting, SLO monitoring  Unified GUI dashboard May 21, 2014: EGI Federated Cloud is launched Cloud Compute Cloud Container Compute BETA Training Infrastructure Online Storage Applications on Demand BETA Notebooks BETA EGI Services powered by the Cloud Federation
  • 15. @EGI_eInfrawww.egi.eu 24/09/2019 15 Scientific Disciplines/Cloud Humanities: CLARIN (2018), DARIAH (+28%, 2017), Life Sciences: ELIXIR (+104%, 2017) Environment: EMSO (2018), LifeWatch (+45%, 2015) BIOISI (+45%, 2016), BIOMED (+575%, 2016), CHIPSTER (+256%, 2016), GEOHAZARDS (+19%, 2016), OpenCOAST (2018), EXTRAS (2018),
  • 16. @EGI_eInfrawww.egi.eu 24/09/2019 16 Cloud Accounting Jan 2017 – June 2019 The IBERGRID Contribution
  • 17. @EGI_eInfrawww.egi.eu 24/09/2019 17 Scientific Computing for Open Science Open data, open software, open applications
  • 18. @EGI_eInfrawww.egi.eu 24/09/2019 18 Sharing of data across research groups LIGO-VIRGO CollaborationLHC Collaboration 3000 open access publications / year
  • 19. @EGI_eInfrawww.egi.eu 24/09/2019 19 Open Data for the UN Sustainable Development Goals Innovative Pilots Business Pilots
  • 20. @EGI_eInfrawww.egi.eu 24/09/2019 20 Open software and solutions • ESRF (France) • ILL (France) • ESS (Sweden) • ELI-DC (Belgium) • XFEL (Germany) • CERIC-ERIC (Italy) • EGI Foundation (Netherlands) Notebooks Federated Cloud
  • 21. @EGI_eInfrawww.egi.eu 24/09/2019 21 • Proteins and biomolecules interact in a complex network • Glitches in this network can cause diseases like cancer • Researchers use 3D models to study how protein and biomolecules interact • This structural information is key to understand the origins of disease and to develop new drugs Sharing of scientific applications Understanding the pathways to disease: the WeNMR community of practice
  • 22. @EGI_eInfrawww.egi.eu 24/09/2019 22 The WeNMR service portfolio 60 Million CPU Hours +120% Q1-Q2 2019 250 TB storage
  • 23. @EGI_eInfrawww.egi.eu 24/09/2019 23 Geo Distribution of the WeNMR Users https://wenmr.science.uu.nl/user_map
  • 24. @EGI_eInfrawww.egi.eu 24/09/2019 24 EGI and the European Open Science Cloud Data, applications and computing infrastructure as integrated solution
  • 25. @EGI_eInfrawww.egi.eu 24/09/2019 25 • Growing demand of Cloud access to HTC, GPU and HPC resources  Machine learning adopted by many applications running in the EGI Federation  Hybrid provisioning is key • End-users engaged at the SaaS level  Easy to use solutions bring together o Federated AAI o Federated data discovery and management o Data analytics capabilities • Data-centric approach to Cloud  Zero download access to large research data holdings e.g Copernicus Towards a data-centric compute infrastructure
  • 26. 26 Climate (big) data challenges and scientific workflow Big data from simulations The volume of worldwide climate data is expanding rapidly, creating challenges for both physical archiving and sharing, as well as for ease of access and finding what’s needed, particularly if you are not a climate scientist. Scientific workflow • Still mostly based on the workflow: search, locate, download, analyze, visualize • client-side and sequential nature of the current approach • Strong need for server-side appoaches with advanced parallel capabilities and no more data download Credits: Hannes Thiemann/DKRZ
  • 27. @EGI_eInfrawww.egi.eu 24/09/2019 27 Federating data in a multi-cloud with the EGI DataHub JOHN’S SPACES SENTINEL 2 DEEP LEARNING PUBLICATIONSSARA’S SPACES SENTINEL 2 SKY MAPS MY DATA A cloud provider: Physical storage for files A space: Organisation of files exposed to the user (Directory structure)
  • 28. @EGI_eInfrawww.egi.eu 24/09/2019 28 Example: EGI Notebooks EGI notebooks server Federated files appear as a directory structure for the user
  • 31. @EGI_eInfrawww.egi.eu 24/09/2019 31 8 Key Exploitable Results and Innovation Roles Services in the EOSC service portfolio EOSC Portal and Marketplace Training Courses and Materials Interoperability & Integration Guidelines Digital Innovation Hub Rules of Participation Service Management System Internal Services in the Hub Portfolio Business and Sustainability Models Service Providers EOSC Hub Operators Researche rs and Research Communit ies Enterprise Education Training & Support EOSC Portal/Marketplace development and operations Compute and Data analytics HTC & Cloud IaaS/PaaS/SaaS Coordination & Infrastructure Security policy coordination Coordination Helpdesk/ Accounting/ Monitoring/ AAI Coordination Compute and Data Analytics
  • 32. @EGI_eInfrawww.egi.eu 24/09/2019 32 EGI project proposal for INFRAEOSC-07 A1
  • 34. @EGI_eInfrawww.egi.eu 24/09/2019 34 • Scientific computing infrastructures are a necessary instrument of scientific excellence and open science in Europe • EGI: from HTC infrastructure, to hybrid HTC & HPC infrastructure supporting cloud IaaS, PaaS, SaaS access  Federated identity provisioning and access  Federated data management towards exabyte scale data processing • European Open Science Cloud  Supporting the entire research data lifecycle from production to zero download data exploitation Conclusions
  • 35. This work by the EGI Foundation is licensed under a Creative Commons Attribution 4.0 International License. Questions? Thank you for your attention. www.egi.eu @EGI_eInfra EGI: Advanced Computing for Research The work of the EGI Foundation is partly funded by the European Commission under H2020 Framework Programme

Editor's Notes

  1. Shanghai Science and Technology Innovation Resources Center
  2. Marketplace: Expose your services to a broader audience Applications DB: Validated software and repository for the EGI infrastructure DataHub: Access, analyse and publish distributed data in the cloud. Check-in: Login with your own credentials Helpdesk: Your point of contact to ask for support at EGI Configuration DB: Manage the configuration information of federated e-infrastructure assets and their functional relations Accounting: Track and report the usage of your services Monitoring: Monitor the performance of IT services
  3. List of services of EGI powered by the EGI Cloud Federation
  4. The figure shows the projected increase in global climate data holdings for climate models, remotely sensed data, and in situ instrumental/proxy data. Traditional approach to data analysis relies on data downloads and use of client-side analysis tools Data are too huge to download; Data sharing and re-use poorly addressed.