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Industrial
Microbiology and
Biotechnology
Dr. K. Madhuri
Asst. Professor
Dept. of Biotechnology
Mahatma Gandhi University
 Define, describe and utilize microbial growth in
fermentation and biological process
 discuss the sources of microorganisms for use in
industrial microbiology and biotechnology
 discuss the genetic manipulation of microorganism to
construct strains that better meet the needs of an
industrial or biotechnological process
 discuss the preservation of microorganisms
 discuss the management of growth characteristics to
produce the desired product
 list the major products or uses of industrial
microbiology and biotechnology
Introduction
 Industrial microbiology and
biotechnology involve the use of
microorganisms to achieve specific
goals
 Biotechnology has developed rapidly
due to the genetic modification of
microorganisms, particularly by
recombinant DNA technology
Choosing
Microorganisms for
Industrial
Microbiology and
Biotechnology
 The characteristics of microbes that are
desirable to the industrial microbiologist
are:
 genetic stability,
 easy maintenance and growth, and
 amenability to procedures for extraction and
purification of desired product
 Finding microorganisms in nature
 major sources of microorganisms for use in
industrial processes are soil, water, and
spoiled bread and fruits
 only a minor portion of microbial species in
most environments have been identified
Genetic manipulation of
microorganisms
1) Mutation—once a promising culture is
found, it can be improved by mutagenesis
with chemical agents and UV light
Protoplast fusion
Protoplast fusion — a tool for genetic
manipulation and breeding in industrial
microorganisms
• Widely used with yeasts and molds, especially if the
microorganism is asexual or of a single mating type, involves
removal of cell walls, mixing two different solutions of
protoplasts, and growth in selective media
• Can be done using species that are not closely related
Insertion of short DNA sequences
• site-directed mutagenesis is used to insert
short lengths of DNA into specific sites in
genome of a microorganism
• leads to small changes in amino acid
sequence that can result in unexpected
changes in protein characteristics
• site-directed mutagenesis is important to the
field of protein engineering
https://www.youtube.com/watch?v=6UiKZKFHbMQ
Transfer of genetic information
between different organisms
• Combinatorial biology—transfer of genes
from one organism to another
• Can improve production efficiency and
minimize purification of the product
• Numerous vectors are available for transfer
of genes
Expressing a foreign protein in a
microbe
or cDNA
Bacterial Gene Promoter/Switch
B. Amyloliquefaciens
Modification of gene expression
• Can involve modifying gene regulation to
overproduce a product
• Pathway architecture and metabolic pathway
engineering—intentional alteration of pathways
by inactivating or deregulating specific genes
• Metabolic control engineering—intentional
alteration of controls for synthesis of a product
Natural genetic engineering
• employs forced evolution and adaptive
mutations;
• specific environmental stresses are used to
force microorganism to mutate and adapt,
this creates microorganism with new
biological capabilities
Preservation of
microorganisms
 strain stability is of concern;
 methods that provide this stability are
lyophilization (freeze-drying) and
 storage in liquid nitrogen
 Industrial microbiologists use the term
fermentation primarily to refer to the
mass culture of microorganisms; the
term has many other meanings to other
microbiologists
Conversion of sugar to alcohol using yeast.
Chemical conversion of carbohydrates into
alcohols or acids.
The process is often used to produce wine
and beer
Also employed in preservation to create
lactic acid in sour foods such as pickled
cucumber, kimchi and yogurt.
The science of fermentation is known as
zymology.
WHAT IS FERMENTATION
Microbial products are often
classified as primary or
secondary metabolites
 Primary metabolites are related to the
synthesis of microbial cells in the growth
phase; they include amino acids, nucleotides,
fermentation end products, and exoenzymes
 Secondary metabolites usually accumulate in
the period of nutrient limitation or waste
product accumulation that follows active
growth; they include antibiotics and mycotoxins
Medium development
 Low-cost crude materials are frequently used as
sources of carbon, nitrogen, and phosphorus;
these include crude plant hydrolysates, whey
from cheese processing, molasses, and by-
products of beer and whiskey processing
 The balance of minerals (especially iron) and
growth factors may be critical; it may be
desirable to supply some critical nutrient in
limiting amounts to cause a programmed shift
from growth to production of desired metabolites
Growth of microorganisms
in an industrial setting
 Physical environment must be defined (i.e.,
agitation, cooling, pH, oxygenation);
oxygenation can be a particular problem with
filamentous organisms as their growth
creates a non-Newtonian broth (viscous),
which is difficult to stir and aerate
 Attention must be focused on the above
physical factors to ensure that they are not
limiting when small-scale laboratory
operations are scaled up to industrial-sized
operations
Culture tubes, shake flasks, and
stirred fermenters of various sizes
are used to culture microorganisms
Major Products of
Industrial
Microbiology
Antibiotics
 Penicillin—careful adjustment of medium
composition is used to slow growth and to
stimulate penicillin production; side chain
precursors can be added to stimulate
production of particular penicillin derivatives;
harvested product can then be modified
chemically to produce a variety of
semisynthetic penicillins
 Streptomycin is a secondary metabolite that is
produced after microorganism growth has
slowed due to nitrogen limitation
Amino acids
 Amino acids such a lysine and glutamic
acid are used as nutritional
supplements and as flavor enhancers
 Amino acid production is usually
increased through the use of regulatory
mutants or through the use of mutants
that alter pathway architecture
Organic acids
 These include citric, acetic, lactic, fumaric, and
gluconic acids
 Citric acid, which is used in large quantities by the food
and beverage industry, is produced largely by
Aspergillus niger fermentation in which trace metals
are limited to regulate glycolysis and the TCA cycle,
thereby producing excess citric acid
 Gluconic acid is also produced in large quantities by A.
niger, but only under conditions of nitrogen limitation;
gluconic acid is used in detergents
 Specialty compounds for use in
medicine and health—include
hormones, ionophores, and
compounds that influence bacteria,
fungi, amoebae, insects, and plants
Biosurfactants
 Biosurfactants are biodegradable
agents used for emulsification,
increasing detergency, wetting and
phase dispersion, as well as for
solubilization
 The most widely used biosurfactants
are glycolipids, which are excellent
dispersing agents
Applications of
Microbial
Biotechnologyy
Making Vaccines
Microbial Cell-Surface
Display
Cytosol
Bioadsorbent
Oral vaccines
Screening peptide
libraries
Mutation detection
Biosensors
Bioconversions
Antibody
production
Passenger protein (red)
Carrier protein (black)
Impacts of Microbial
Biotechnology
 Ethical and ecological considerations are
important in the use of biotechnology
 Industrial ecology—discipline concerned
with tracking the flow of elements and
compounds through biosphere and
anthrosphere
https://www.youtube.com/watch?v=6UiKZKFHbMQ
Now, let’s watch this
amazing video
presentation ! 
Algae Bioremediation for Waste
Treatment
http://www.youtube.com/watch?v=O-
5mEoHzSKc
Cleaning out the Past, Packing up the
Present and Preparing for a much
better Future!!!
Louise L. Hay
DEPARTMENT OF
BIOTECHNOLOGYTHANK YOU

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Industrial microbiology and biotechnology

  • 1. Industrial Microbiology and Biotechnology Dr. K. Madhuri Asst. Professor Dept. of Biotechnology Mahatma Gandhi University
  • 2.
  • 3.  Define, describe and utilize microbial growth in fermentation and biological process  discuss the sources of microorganisms for use in industrial microbiology and biotechnology  discuss the genetic manipulation of microorganism to construct strains that better meet the needs of an industrial or biotechnological process  discuss the preservation of microorganisms
  • 4.  discuss the management of growth characteristics to produce the desired product  list the major products or uses of industrial microbiology and biotechnology
  • 5. Introduction  Industrial microbiology and biotechnology involve the use of microorganisms to achieve specific goals  Biotechnology has developed rapidly due to the genetic modification of microorganisms, particularly by recombinant DNA technology
  • 7.  The characteristics of microbes that are desirable to the industrial microbiologist are:  genetic stability,  easy maintenance and growth, and  amenability to procedures for extraction and purification of desired product
  • 8.
  • 9.  Finding microorganisms in nature  major sources of microorganisms for use in industrial processes are soil, water, and spoiled bread and fruits  only a minor portion of microbial species in most environments have been identified
  • 10.
  • 11. Genetic manipulation of microorganisms 1) Mutation—once a promising culture is found, it can be improved by mutagenesis with chemical agents and UV light
  • 12. Protoplast fusion Protoplast fusion — a tool for genetic manipulation and breeding in industrial microorganisms
  • 13. • Widely used with yeasts and molds, especially if the microorganism is asexual or of a single mating type, involves removal of cell walls, mixing two different solutions of protoplasts, and growth in selective media • Can be done using species that are not closely related
  • 14. Insertion of short DNA sequences • site-directed mutagenesis is used to insert short lengths of DNA into specific sites in genome of a microorganism • leads to small changes in amino acid sequence that can result in unexpected changes in protein characteristics • site-directed mutagenesis is important to the field of protein engineering
  • 16. Transfer of genetic information between different organisms • Combinatorial biology—transfer of genes from one organism to another • Can improve production efficiency and minimize purification of the product • Numerous vectors are available for transfer of genes
  • 17.
  • 18. Expressing a foreign protein in a microbe or cDNA Bacterial Gene Promoter/Switch B. Amyloliquefaciens
  • 19. Modification of gene expression • Can involve modifying gene regulation to overproduce a product • Pathway architecture and metabolic pathway engineering—intentional alteration of pathways by inactivating or deregulating specific genes • Metabolic control engineering—intentional alteration of controls for synthesis of a product
  • 20. Natural genetic engineering • employs forced evolution and adaptive mutations; • specific environmental stresses are used to force microorganism to mutate and adapt, this creates microorganism with new biological capabilities
  • 21.
  • 22. Preservation of microorganisms  strain stability is of concern;  methods that provide this stability are lyophilization (freeze-drying) and  storage in liquid nitrogen
  • 23.
  • 24.  Industrial microbiologists use the term fermentation primarily to refer to the mass culture of microorganisms; the term has many other meanings to other microbiologists
  • 25. Conversion of sugar to alcohol using yeast. Chemical conversion of carbohydrates into alcohols or acids. The process is often used to produce wine and beer Also employed in preservation to create lactic acid in sour foods such as pickled cucumber, kimchi and yogurt. The science of fermentation is known as zymology. WHAT IS FERMENTATION
  • 26. Microbial products are often classified as primary or secondary metabolites  Primary metabolites are related to the synthesis of microbial cells in the growth phase; they include amino acids, nucleotides, fermentation end products, and exoenzymes  Secondary metabolites usually accumulate in the period of nutrient limitation or waste product accumulation that follows active growth; they include antibiotics and mycotoxins
  • 27. Medium development  Low-cost crude materials are frequently used as sources of carbon, nitrogen, and phosphorus; these include crude plant hydrolysates, whey from cheese processing, molasses, and by- products of beer and whiskey processing  The balance of minerals (especially iron) and growth factors may be critical; it may be desirable to supply some critical nutrient in limiting amounts to cause a programmed shift from growth to production of desired metabolites
  • 28. Growth of microorganisms in an industrial setting  Physical environment must be defined (i.e., agitation, cooling, pH, oxygenation); oxygenation can be a particular problem with filamentous organisms as their growth creates a non-Newtonian broth (viscous), which is difficult to stir and aerate  Attention must be focused on the above physical factors to ensure that they are not limiting when small-scale laboratory operations are scaled up to industrial-sized operations
  • 29. Culture tubes, shake flasks, and stirred fermenters of various sizes are used to culture microorganisms
  • 31. Antibiotics  Penicillin—careful adjustment of medium composition is used to slow growth and to stimulate penicillin production; side chain precursors can be added to stimulate production of particular penicillin derivatives; harvested product can then be modified chemically to produce a variety of semisynthetic penicillins  Streptomycin is a secondary metabolite that is produced after microorganism growth has slowed due to nitrogen limitation
  • 32. Amino acids  Amino acids such a lysine and glutamic acid are used as nutritional supplements and as flavor enhancers  Amino acid production is usually increased through the use of regulatory mutants or through the use of mutants that alter pathway architecture
  • 33. Organic acids  These include citric, acetic, lactic, fumaric, and gluconic acids  Citric acid, which is used in large quantities by the food and beverage industry, is produced largely by Aspergillus niger fermentation in which trace metals are limited to regulate glycolysis and the TCA cycle, thereby producing excess citric acid  Gluconic acid is also produced in large quantities by A. niger, but only under conditions of nitrogen limitation; gluconic acid is used in detergents
  • 34.  Specialty compounds for use in medicine and health—include hormones, ionophores, and compounds that influence bacteria, fungi, amoebae, insects, and plants
  • 35. Biosurfactants  Biosurfactants are biodegradable agents used for emulsification, increasing detergency, wetting and phase dispersion, as well as for solubilization  The most widely used biosurfactants are glycolipids, which are excellent dispersing agents
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  • 53. Microbial Cell-Surface Display Cytosol Bioadsorbent Oral vaccines Screening peptide libraries Mutation detection Biosensors Bioconversions Antibody production Passenger protein (red) Carrier protein (black)
  • 54. Impacts of Microbial Biotechnology  Ethical and ecological considerations are important in the use of biotechnology  Industrial ecology—discipline concerned with tracking the flow of elements and compounds through biosphere and anthrosphere
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  • 57. https://www.youtube.com/watch?v=6UiKZKFHbMQ Now, let’s watch this amazing video presentation ! 
  • 58. Algae Bioremediation for Waste Treatment http://www.youtube.com/watch?v=O- 5mEoHzSKc
  • 59. Cleaning out the Past, Packing up the Present and Preparing for a much better Future!!! Louise L. Hay