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P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications
                        (IJERA) ISSN: 2248-9622 www.ijera.com
                      Vol. 2, Issue4, July-August 2012, pp.1756-1758
           Classification Of Medical Images Using Visual Words

             P.JATADHAR*                                            Mrs.K.F.BHARATI *
             M.Tech VIth SEM PTPG                                     Asst.Prof., Department of CSE
              JNTUACE Anantapur.                                         JNTUACE Anantapur.



Abstract
         Data mining techniques are having                  Processing techniques and the data mining techniques
applications in various fields. Medical field is one        may be applied in-order to retrieve the relevant and
among them. Our work involves processing of the             significant data from the existing million of tons of
medical images specially Chest X-Rays. The                  medical data[2].
process involves - classification of the images using
visual words. The images are segmented into                 2. RELATED WORK
patches of Textons, known as visual words.                  Image Digitization - images acquired as x-ray
Features are extracted from the patches to create           images need to be processed to remove the unwanted
a feature vector. The vectors thus formed are               data from the images. The medical images are usually
converted into visual words and the vector                  obtained in the form of X-rays using recording
collection is clustered into k-groups using K-means         techniques like electroencephalography (EEG),
clustering. After clustering, The images are                magnetoencephalography                        (MEG),
classified using Support Vector Machine                     electrocardiography (EKG), etc. These techniques
approach.                                                   produce the images; but with some added
                                                            disturbances like noise, air, etc. When these X-ray
1. INTRODUCTION                                             images are transformed into the digital format these
          With the increasing influence of computer         disturbances also get converted into digital format
techniques on the medical industry, the production of       and become a part of the image, which may adversely
digitized medical data is also increasing heavily.          affect the process of generating the accurate data
Though the size of the medical data repository is           required when the images are processed for medical
increasing heavily, it is not being utilized efficiently,   help [9]. Thus first and foremost these unwanted data
apart from just being used once for the specific            needs to be separated from the images. This is where
medical case diagnosis. In such cases, the time spent       the field of Image processing comes to the rescue [4].
on the process of analyzing the data is also utilized to    When dealing with the medical images, many
only for that one case. But if the time and data were       operations need to be performed on those images in-
to be utilized in solving multiple medical cases then       order to get more clarity in the image data. These
the medical industry can benefit intensively from the       operations are:
medical experts’ time in providing new and more
effective ways of handling and inventing medical                       -   Enhancement of brightness and
treatments for the future. This can be made possible                       contrast adjustments, color mapping,
by combining two most prominent fields in the field                        color balancing, quantization, or color
of computer science – data mining techniques and                           translation to a different color space
image processing techniques [5]&[6].                                   -   Image recognition, for example, may
          Medical imaging is the technique used to                         extract the text from the image using
create images of the human body for medical                                optical character recognition or
procedures (i.e., to reveal, diagnose or examine                           checkbox and bubble values using
disease) or for medical science. Medical imaging is                        optical mark recognition
often perceived to designate the set of techniques that                -   Image segmentation
noninvasively produce images of the internal aspect
of the body. Due to increase in efficient medical                   Medical Image Mining includes the
imaging techniques there is an incredible increase in       following phases: pre-processing phase, bag-of-
the number of medical images. These images if               visual-words phase, Clustering phase and Retrieval
archived and maintained would aid the medical               phase.
industry (doctors and radiologists) in ensuring
efficient diagnosis [1].
          The core of the medical data are the digital      Preprocessing phase – includes the process of
images, obtained after processing the x-ray medical         removing the unwanted data from the image and
images; these should be processed in-order to               improve the quality of the images [10]. This process
improve their texture and quality using image               of removing unwanted data (like stop-words in the


                                                                                                 1756 | P a g e
P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications
                        (IJERA) ISSN: 2248-9622 www.ijera.com
                      Vol. 2, Issue4, July-August 2012, pp.1756-1758
data mining process) can be achieved by the               (visual-words). For each patch the hue, saturation,
techniques - cropping, image enhancement and              and brightness is calculated. Since it is a grey-scale
histogram equalization [4].                               image the hue and saturation count remains zero.
                                                          Thus ultimately the feature of brightness is
Bag-of-visual words phase – consists of the               considered for the future processing of the image.
complete process of obtaining the bag-of-visual           The patches are grouped into a group and the average
words (patches) formation and feature extraction.         feature is calculated for the group [4]. The group of
                                                          the patches is formed by considering the adjacent
                                                          patches obtained along the horizontal and vertical
Bag-of-Visual words (patches) formation - When
dealing with images it is always good to deal with the    lines. Finally there would be certain number of
image segment-wise. Each segment will have more           groups of feature description of each image. These
                                                          feature description groups along with the images are
clarity when compared to the complete image. Each
segment of the image is referred to as a patch (visual    maintained in a database for the clustering process.
word). Each patch is a collection of the pixels in an     The images are compared against each other using
image, Textons. Textons refer to fundamental micro-       the feature description groups and the Euclidean
structures in generic natural images and the basic        distance is calculated. The similar images are
elements in early (pre-attentive) visual perception.      grouped together into a cluster. Initially a certain
                                                          number of clusters are chosen, and then some
The further operations are performed on these
                                                          randomly picked images are set as the centroids for
patches. Each patch can be treated to be an image
                                                          each cluster. During the classification phase, the
[1].
                                                          input image is initially compared to the centroids of
          Feature Extraction - Post image                 each cluster, and based on the closeness to the
                                                          centroid, a class label is attached to the image [3].
enhancement and cropping, the images are obtained
                                                          Based on the class Image is Retrieval [2].
in a high-quality. The features pertaining to the
classification can be efficiently extracted from such
clean and high quality images. The features, such as      3. IMPLEMENTATION
hue, saturation and brightness, are extracted for each             The work is implemented in the Java
patch and the value of these features is stored along     language using JDBC for the database connectivity
with the respective patch. This stored data will be       and other features of Java pertaining the images, and
useful in image classification and retrieval process      core Java.
[3].
                                                                    Pre-processing Phase: The first phase of
         Clustering Phase - The images obtained           the work includes, the pre-processing phase. The
from the previous phases are segregated into groups       images which are to be preprocessed are collected in
based on the similarity of the features extracted. Each   a directory as Buffered Images, and one by one those
segment thus formed is referred to a cluster. The         images are processed [1]. Here for processing the
patches which are similar will be grouped into one        histogram equalization technique is applied. The
cluster and the patches which dissimilar features are     height and the width of the image is calculated and
placed in separate clusters. An index to each cluster     from this, the pixels are collected as ints (data type –
may be maintained, which will be used in further          integer) of the form 0xRRGGBB. Then from each
image retrieval operations, reducing the number of        pixel, the red, green, and blue components are
image comparisons [4].                                    extracted. From the data obtained the histogram is
                                                          created. From the histogram equalization [7], we
          Classification phase- The medical images        obtain much clear images.
can be classified based on the feature comparison of                Bag-of-Visual-words Phase: In this phase,
the images stored in the clusters. Also image             the visual words (patches) are extracted from the
classification can be done for a specific region of       equalized images, obtained from the previous phase
interest (ROI) using CAD (Computer-Aided                  [1]. Initially, we obtain the width and height of the
Diagnosis) algorithms. The medical image classifiers      image, and then divide the image into patches based
can be based on the type and nature of the features       upon the Textons. Thus the required bag of visual
being considered [8].                                     words is formed.
                                                          Textons
PROPOSED METHOD
         The proposed work includes all the phases
mentioned above. In the preprocessing phase, an X-
ray image is obtained in the gray-scale [1]. This gray-
scale image is pre-processed using the histogram
equalization inorder to improve its visual quality [7].
The thus obtained image is segmented into patches

                                                                                                 1757 | P a g e
P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications
                        (IJERA) ISSN: 2248-9622 www.ijera.com
                      Vol. 2, Issue4, July-August 2012, pp.1756-1758
                                                           requirement is very high, as the images require more
                                                           memory storage space than compared to the text data.
                                                           The work can be expanded in the future by taking
                                                           into account various other features of the images like
                                                           texture, shape etc.

                                                           5. REFERENCES
                                                             1.    Uri Avni, Hayit Greenspan*, Eli Konen,
                                                                   Michal Sharon, and Jacob Goldberger
                                                                   (March 2011) X-ray Categorization and
Feature description - For each patch in the image,                 Retrieval on the Organ and Pathology Level,
the HSB (hue, saturation and brightness) are                       Using Patch-Based Visual Words. IEEE
calculated. Since the hue and saturation count for the             Transactions on Medical Imaging, Vol 30,
gray-scale images is zero, we take into account the                N0.3.
brightness feature. The neighboring (along the               2.    Sonali Bhadoria, Dr C G Dethe (2010)
vertical and horizontal line) patches are grouped into             Study of Medical Image Retrieval System.
a vector of patches. For each patch vector we obtain               International Conference on Data Storage
the average brightness feature. This information                   and Data Engineering, IEEE Computer
obtained is stored into the database for the future                Society.
calculations [7].                                            3.    Fu Li-dong, Zhang Yi-fei (2010) Medical
                                                                   Image Retrieval and Classification Based on
          Cluster Phase: Based on the varied                       Morphological Shape Feature. Third
medical cases, we decide upon the number of clusters               International Conference on Intelligent
[6]. Then randomly few images are picked up which                  Networks and Intelligent Systems.
are considered to be the centroid of each cluster.           4.    Maria-Luiza Antonie, Osmar R. Za¨ıane,
Then the similarity between the images is found out                Alexandru        Coman,(      August    2001)
by calculating the Euclidean distance between the                  Application of Data Mining Techniques for
vectors of the images being considered. The images                 Medical Image Classification. Proceedings
are said to be similar if their Euclidean distance is              of the Second International Workshop on
equal to the threshold value (assumed). Thus the                   Multimedia               Data          Mining
similar images are collected into a cluster (here, the             (MDM/KDD'2001), in conjunction with
cluster is a directory). Having placed all the images              ACM SIGKDD conference, SanFrancisco,
into their respective clusters, for each cluster based             USA.
upon the containing images, new centroid image is            5.    Pang-Ning Tan, Vipin Kumar and Micheal
found [5]&[6].                                                     Steinbach, “Introduction to Data Mining”,
                                                                   Pearson education, 2006.
Classification Phase – during this phase the clusters        6.    Jiawei Han and Kamber, “Data mining
boundary conditions are identified. The boundary                   concepts and techniques”, 3e, Elsevier,
conditions are defined based on the values of the                  2011.
feature vectors of the images available in the cluster.      7.    A. Barla, F. Odone, and A. Verri,
Non linear separable support vector machine                        “Histogram intersection kernel for image
technique is applied to find the correct class label for           classification,” in Proc. ICIP, 2003, vol. 3
the new or query image [2]&[8].                              8.    Khanh Vu, Hua K.A and Tavanapong W.,
                                                                   “Image Retrieval Based on Regions of
                                                                   Interest”, Knowledge and Data Engineering,
4. CONCLUSIONS
                                                                   IEEE Transactions on, vol. 15, pp.1045-
         The process of diagnosis is a time taking
                                                                   1049, April 2003.
process; and only in the case where the patient is
                                                             9.    W. Khaliq, C. J. Blakeley, S. Maheshwaran,
found to be affected, she/he is referred to treatment.
                                                                   K. Hashemi1, and P.Redman, “Comparison
So, in most of the healthy cases, the time spent by the
                                                                   of a pacs workstation with laser hard copies
human expert in the diagnosis process is being
                                                                   for detecting scaphoid fractures in the
wasted; instead if the diagnosis report generation
                                                                   emergency department,” J. Digital Image.,
process is automated, then the human expert time and
                                                                   vol. 23, no. 1, pp. 100–103, 2008.
experience may be utilized in a better way for the
                                                             10.   W. W. Chu, A. F. Cárdenas, and R. K. Taira,
improvement of the medical field by inventing new
                                                                   “Kmed: A knowledgebased multimedia
effective ways of dealing with the diseases. In this
                                                                   medical distributed database system,” Inf.
process, there are certain challenges to be handled as
                                                                   Syst., vol. 20, no. 2, pp. 75–96, 1995
well. The challenges arise from the fact that dealing
with the images and processing the images is a very
time consuming process; as well the storage

                                                                                                1758 | P a g e

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Medical Image Fusion Using Discrete Wavelet Transform
Medical Image Fusion Using Discrete Wavelet TransformMedical Image Fusion Using Discrete Wavelet Transform
Medical Image Fusion Using Discrete Wavelet Transform
 

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  • 1. P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications (IJERA) ISSN: 2248-9622 www.ijera.com Vol. 2, Issue4, July-August 2012, pp.1756-1758 Classification Of Medical Images Using Visual Words P.JATADHAR* Mrs.K.F.BHARATI * M.Tech VIth SEM PTPG Asst.Prof., Department of CSE JNTUACE Anantapur. JNTUACE Anantapur. Abstract Data mining techniques are having Processing techniques and the data mining techniques applications in various fields. Medical field is one may be applied in-order to retrieve the relevant and among them. Our work involves processing of the significant data from the existing million of tons of medical images specially Chest X-Rays. The medical data[2]. process involves - classification of the images using visual words. The images are segmented into 2. RELATED WORK patches of Textons, known as visual words. Image Digitization - images acquired as x-ray Features are extracted from the patches to create images need to be processed to remove the unwanted a feature vector. The vectors thus formed are data from the images. The medical images are usually converted into visual words and the vector obtained in the form of X-rays using recording collection is clustered into k-groups using K-means techniques like electroencephalography (EEG), clustering. After clustering, The images are magnetoencephalography (MEG), classified using Support Vector Machine electrocardiography (EKG), etc. These techniques approach. produce the images; but with some added disturbances like noise, air, etc. When these X-ray 1. INTRODUCTION images are transformed into the digital format these With the increasing influence of computer disturbances also get converted into digital format techniques on the medical industry, the production of and become a part of the image, which may adversely digitized medical data is also increasing heavily. affect the process of generating the accurate data Though the size of the medical data repository is required when the images are processed for medical increasing heavily, it is not being utilized efficiently, help [9]. Thus first and foremost these unwanted data apart from just being used once for the specific needs to be separated from the images. This is where medical case diagnosis. In such cases, the time spent the field of Image processing comes to the rescue [4]. on the process of analyzing the data is also utilized to When dealing with the medical images, many only for that one case. But if the time and data were operations need to be performed on those images in- to be utilized in solving multiple medical cases then order to get more clarity in the image data. These the medical industry can benefit intensively from the operations are: medical experts’ time in providing new and more effective ways of handling and inventing medical - Enhancement of brightness and treatments for the future. This can be made possible contrast adjustments, color mapping, by combining two most prominent fields in the field color balancing, quantization, or color of computer science – data mining techniques and translation to a different color space image processing techniques [5]&[6]. - Image recognition, for example, may Medical imaging is the technique used to extract the text from the image using create images of the human body for medical optical character recognition or procedures (i.e., to reveal, diagnose or examine checkbox and bubble values using disease) or for medical science. Medical imaging is optical mark recognition often perceived to designate the set of techniques that - Image segmentation noninvasively produce images of the internal aspect of the body. Due to increase in efficient medical Medical Image Mining includes the imaging techniques there is an incredible increase in following phases: pre-processing phase, bag-of- the number of medical images. These images if visual-words phase, Clustering phase and Retrieval archived and maintained would aid the medical phase. industry (doctors and radiologists) in ensuring efficient diagnosis [1]. The core of the medical data are the digital Preprocessing phase – includes the process of images, obtained after processing the x-ray medical removing the unwanted data from the image and images; these should be processed in-order to improve the quality of the images [10]. This process improve their texture and quality using image of removing unwanted data (like stop-words in the 1756 | P a g e
  • 2. P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications (IJERA) ISSN: 2248-9622 www.ijera.com Vol. 2, Issue4, July-August 2012, pp.1756-1758 data mining process) can be achieved by the (visual-words). For each patch the hue, saturation, techniques - cropping, image enhancement and and brightness is calculated. Since it is a grey-scale histogram equalization [4]. image the hue and saturation count remains zero. Thus ultimately the feature of brightness is Bag-of-visual words phase – consists of the considered for the future processing of the image. complete process of obtaining the bag-of-visual The patches are grouped into a group and the average words (patches) formation and feature extraction. feature is calculated for the group [4]. The group of the patches is formed by considering the adjacent patches obtained along the horizontal and vertical Bag-of-Visual words (patches) formation - When dealing with images it is always good to deal with the lines. Finally there would be certain number of image segment-wise. Each segment will have more groups of feature description of each image. These feature description groups along with the images are clarity when compared to the complete image. Each segment of the image is referred to as a patch (visual maintained in a database for the clustering process. word). Each patch is a collection of the pixels in an The images are compared against each other using image, Textons. Textons refer to fundamental micro- the feature description groups and the Euclidean structures in generic natural images and the basic distance is calculated. The similar images are elements in early (pre-attentive) visual perception. grouped together into a cluster. Initially a certain number of clusters are chosen, and then some The further operations are performed on these randomly picked images are set as the centroids for patches. Each patch can be treated to be an image each cluster. During the classification phase, the [1]. input image is initially compared to the centroids of Feature Extraction - Post image each cluster, and based on the closeness to the centroid, a class label is attached to the image [3]. enhancement and cropping, the images are obtained Based on the class Image is Retrieval [2]. in a high-quality. The features pertaining to the classification can be efficiently extracted from such clean and high quality images. The features, such as 3. IMPLEMENTATION hue, saturation and brightness, are extracted for each The work is implemented in the Java patch and the value of these features is stored along language using JDBC for the database connectivity with the respective patch. This stored data will be and other features of Java pertaining the images, and useful in image classification and retrieval process core Java. [3]. Pre-processing Phase: The first phase of Clustering Phase - The images obtained the work includes, the pre-processing phase. The from the previous phases are segregated into groups images which are to be preprocessed are collected in based on the similarity of the features extracted. Each a directory as Buffered Images, and one by one those segment thus formed is referred to a cluster. The images are processed [1]. Here for processing the patches which are similar will be grouped into one histogram equalization technique is applied. The cluster and the patches which dissimilar features are height and the width of the image is calculated and placed in separate clusters. An index to each cluster from this, the pixels are collected as ints (data type – may be maintained, which will be used in further integer) of the form 0xRRGGBB. Then from each image retrieval operations, reducing the number of pixel, the red, green, and blue components are image comparisons [4]. extracted. From the data obtained the histogram is created. From the histogram equalization [7], we Classification phase- The medical images obtain much clear images. can be classified based on the feature comparison of Bag-of-Visual-words Phase: In this phase, the images stored in the clusters. Also image the visual words (patches) are extracted from the classification can be done for a specific region of equalized images, obtained from the previous phase interest (ROI) using CAD (Computer-Aided [1]. Initially, we obtain the width and height of the Diagnosis) algorithms. The medical image classifiers image, and then divide the image into patches based can be based on the type and nature of the features upon the Textons. Thus the required bag of visual being considered [8]. words is formed. Textons PROPOSED METHOD The proposed work includes all the phases mentioned above. In the preprocessing phase, an X- ray image is obtained in the gray-scale [1]. This gray- scale image is pre-processed using the histogram equalization inorder to improve its visual quality [7]. The thus obtained image is segmented into patches 1757 | P a g e
  • 3. P.Jatadhar, Mrs.K.F.Bharati / International Journal of Engineering Research and Applications (IJERA) ISSN: 2248-9622 www.ijera.com Vol. 2, Issue4, July-August 2012, pp.1756-1758 requirement is very high, as the images require more memory storage space than compared to the text data. The work can be expanded in the future by taking into account various other features of the images like texture, shape etc. 5. REFERENCES 1. Uri Avni, Hayit Greenspan*, Eli Konen, Michal Sharon, and Jacob Goldberger (March 2011) X-ray Categorization and Feature description - For each patch in the image, Retrieval on the Organ and Pathology Level, the HSB (hue, saturation and brightness) are Using Patch-Based Visual Words. IEEE calculated. Since the hue and saturation count for the Transactions on Medical Imaging, Vol 30, gray-scale images is zero, we take into account the N0.3. brightness feature. The neighboring (along the 2. Sonali Bhadoria, Dr C G Dethe (2010) vertical and horizontal line) patches are grouped into Study of Medical Image Retrieval System. a vector of patches. For each patch vector we obtain International Conference on Data Storage the average brightness feature. This information and Data Engineering, IEEE Computer obtained is stored into the database for the future Society. calculations [7]. 3. Fu Li-dong, Zhang Yi-fei (2010) Medical Image Retrieval and Classification Based on Cluster Phase: Based on the varied Morphological Shape Feature. Third medical cases, we decide upon the number of clusters International Conference on Intelligent [6]. Then randomly few images are picked up which Networks and Intelligent Systems. are considered to be the centroid of each cluster. 4. Maria-Luiza Antonie, Osmar R. Za¨ıane, Then the similarity between the images is found out Alexandru Coman,( August 2001) by calculating the Euclidean distance between the Application of Data Mining Techniques for vectors of the images being considered. The images Medical Image Classification. Proceedings are said to be similar if their Euclidean distance is of the Second International Workshop on equal to the threshold value (assumed). Thus the Multimedia Data Mining similar images are collected into a cluster (here, the (MDM/KDD'2001), in conjunction with cluster is a directory). Having placed all the images ACM SIGKDD conference, SanFrancisco, into their respective clusters, for each cluster based USA. upon the containing images, new centroid image is 5. Pang-Ning Tan, Vipin Kumar and Micheal found [5]&[6]. Steinbach, “Introduction to Data Mining”, Pearson education, 2006. Classification Phase – during this phase the clusters 6. Jiawei Han and Kamber, “Data mining boundary conditions are identified. The boundary concepts and techniques”, 3e, Elsevier, conditions are defined based on the values of the 2011. feature vectors of the images available in the cluster. 7. A. Barla, F. Odone, and A. Verri, Non linear separable support vector machine “Histogram intersection kernel for image technique is applied to find the correct class label for classification,” in Proc. ICIP, 2003, vol. 3 the new or query image [2]&[8]. 8. Khanh Vu, Hua K.A and Tavanapong W., “Image Retrieval Based on Regions of Interest”, Knowledge and Data Engineering, 4. CONCLUSIONS IEEE Transactions on, vol. 15, pp.1045- The process of diagnosis is a time taking 1049, April 2003. process; and only in the case where the patient is 9. W. Khaliq, C. J. Blakeley, S. Maheshwaran, found to be affected, she/he is referred to treatment. K. Hashemi1, and P.Redman, “Comparison So, in most of the healthy cases, the time spent by the of a pacs workstation with laser hard copies human expert in the diagnosis process is being for detecting scaphoid fractures in the wasted; instead if the diagnosis report generation emergency department,” J. Digital Image., process is automated, then the human expert time and vol. 23, no. 1, pp. 100–103, 2008. experience may be utilized in a better way for the 10. W. W. Chu, A. F. Cárdenas, and R. K. Taira, improvement of the medical field by inventing new “Kmed: A knowledgebased multimedia effective ways of dealing with the diseases. In this medical distributed database system,” Inf. process, there are certain challenges to be handled as Syst., vol. 20, no. 2, pp. 75–96, 1995 well. The challenges arise from the fact that dealing with the images and processing the images is a very time consuming process; as well the storage 1758 | P a g e