Marine Lifewatch meeting 3-5 June 2014
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Presentation on biodiversity.aq at the marine Lifewatch meeting 3-5 June 2014
![Antarctic Treaty
« In order to promote international cooperation in
scientific investigation in Antarctica, […],
Scientific observations and results from Antarctica
shall be exchanged and made freely available. »
Our vision:"
Antarctic biodiversity data are open, linked, useful,
interoperable and safe.](data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)
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Marine Lifewatch meeting 3-5 June 2014
- 1. The Antarctic Biodiversity Portal! contributions to a marine virtual lab Anton Van de Putte Biodiversity.aq RBINS HCMR, Crete
- 2. Antarctic Treaty « In order to promote international cooperation in scientific investigation in Antarctica, […], Scientific observations and results from Antarctica shall be exchanged and made freely available. » Our vision:" Antarctic biodiversity data are open, linked, useful, interoperable and safe.
- 3. Background • Born during the IPY as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data • SCAR-MarBIN and ANTABIF projects • Science, conservation and management • Networked community developments
- 4. Architectural design & developments! WWW DATA AFG mARS ATLAS IPT share
- 5. WWW.BIODIVERSITY.AQ • General website • latest news • contact • sponsors • governance • resources • projects
- 6. IPT.BIODIVERSITY.AQ IPT (meta)DATA DWC-‐A Data paper HIT
- 7. DATA HIT AADC DATA.BIODIVERSITY.AQ AMD IPT Taxonomy RAMS Environmental AADC OCCURRENCE (INTERNAL WEB SERVICE) TAXONOMY (INTERNAL WEB SERVICE)
- 8. DATA AFG.BIODIVERSITY.AQ AFG Expert Provided Content (text & images) Occurrence Taxonomy
- 10. ATLAS.BIODIVERSITY.AQ • Biogeographic Atlas of the Southern Ocean • Editors: De Broyer & Koubbi • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready
- 11. Environmental layers • Slope • Bathymetry • Chlorophyll • Distance to the continent • Distance to bird colonies • Distance to ice • Distance to shelf • Distance to canyon • Floor temperature • ... • + • ANTABIF Occurrence records
- 12. • R-functions GUI for BRT and GDM • https://github.com/jiho/atlasr
- 13. 45°S 55°S 65°S 75°S 0° 30°W 30°E 150°E150°W 180° 60°E60°W 90°E90°W 120°E120°W Legend Value High : 0.994270 Low : 0.001170 45°S 55°S 65°S 75°S 0° 30°W 30°E 150°E150°W 180° 60°E60°W 90°E90°W 120°E120°W Legend euphau_pres-abs Euphausia6 0 1
- 15. IPT MiMARKS mARS mARS.BIODIVERSITY.AQ Sequence set summary
- 16. mARS white paper . • Step 1: Data description and discovery • Step 2: Habitat and Microbial Sequence Metadata Entry – (MiMARKS Data Standard; Microbial_Sequence_Set_Template) • Step 3: Georeferenced-molecular sequence database integration • Step 4: Processing batch sequence data – Circum-Antarctic microbial diversity
- 17. Continued efforts • Application of informatics techniques to biodiversity information • Improved integration, presentation, discovery, exploration and analysis. • Yields new ways to view and analyse existing information, as well as predictive models for information that does not yet exist. • Allows data-intensive biodiversity research and applications (e.g. in conservation)
- 18. Privileged partners Partners Associate partners
Editor's Notes
- This is a slide I always start with, as it show the unique environment the Antarctic form and was already
- Identification aid High quality (useful) pictures Expert Descriptions Built on-the-fly from various sources Generates a pdf for taxa/area of interest
- The Microbial Antarctic Resources System (mARS) is envisioned as an information system dedicated to facilitate the discovery, access and analysis of geo-referenced, molecular microbial diversity (meta)data generated by Antarctic researchers, in an Open fashion. The scope of diversity will encompass all freel-living and host-associated virus, Bacteria, Archaea, and singled-celled Eukarya. mARS focuses on past, present and future works. It offers a community-driven platform for scientists to publish, document, analyse and share their (meta)data with the broad community for science, conservation and management purposes, in the spirit of the Antarctic Treaty.